Vietnam Shigella (ID 203936) - BioProject

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Accession: PRJEB2128 ID: 203936

Vietnam Shigella

For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/shigella-sonnei. More...

Accession	PRJEB2128
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Publications	Holt KE et al., "Tracking the establishment of local endemic populations of an emergent enteric pathogen.", Proc Natl Acad Sci U S A, 2013 Oct 22;110(43):17522-7
Submission	Registration date: 21-May-2013 Wellcome Sanger Institute

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	55640
WGS master	135
Genomic DNA	2
SRA Experiments	354
Protein Sequences	589560
Publications
PubMed	1
PMC	1
Other datasets
BioSample	297
Assembly	135

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Total

135
135

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001251395.1	CXAT00000000	SAMEA954740	Sh62542_401057	Shigella sonnei
GCA_001251255.1	CXCN00000000	SAMEA954708	Sh54228_440888	Shigella sonnei
GCA_001251235.1	CXBN00000000	SAMEA954790	ShIB2013_440764	Shigella sonnei
GCA_001250495.1	CXDI00000000	SAMEA954679	Sh373_441041	Shigella sonnei
GCA_001250375.1	CXEG00000000	SAMEA954599	20021122_1361394	Shigella sonnei
GCA_001250655.1	CXBG00000000	SAMEA954738	ShIB683_401084	Shigella sonnei
GCA_001250735.1	CXEL00000000	SAMEA954629	20081885_1361371	Shigella sonnei
GCA_001250715.1	CXBL00000000	SAMEA954574	ShIB1970_440736	Shigella sonnei
GCA_001250835.1	CXBQ00000000	SAMEA954573	ShIB748_440735	Shigella sonnei
GCA_001252295.1	CXDN00000000	SAMEA954745	Sh36224_441098	Shigella sonnei
GCA_001252355.1	CXCV00000000	SAMEA954703	Sh1265_440935	Shigella sonnei
GCA_001252835.1	CXFD00000000	SAMEA954727	SS132330_2496119	Shigella sonnei
GCA_001252535.1	CXEO00000000	SAMEA954581	19984123_1361396	Shigella sonnei
GCA_001252575.1	CXDQ00000000	SAMEA954678	Sh1274_441042	Shigella sonnei
GCA_001252595.1	CXFF00000000	SAMEA954646	SS136782_2496123	Shigella sonnei
GCA_001252655.1	CXEI00000000	SAMEA954540	CS14_1361403	Shigella sonnei
GCA_001251955.1	CXAZ00000000	SAMEA954636	ShIB691_401087	Shigella sonnei
GCA_001252135.1	CXDG00000000	SAMEA954673	Sh1167_440937	Shigella sonnei
GCA_001252035.1	CXEC00000000	SAMEA954596	20003593_1361393	Shigella sonnei
GCA_001252175.1	CXDK00000000	SAMEA954797	Sh4474_441045	Shigella sonnei
GCA_001251775.1	CXCF00000000	SAMEA954851	ShIB2015_440825	Shigella sonnei
GCA_001251855.1	CXEA00000000	SAMEA954620	20061309_1361392	Shigella sonnei
GCA_001251675.1	CXBO00000000	SAMEA954578	ShIB1993_440756	Shigella sonnei
GCA_001252795.1	CXGJ00000000	SAMEA1013658	SS128716_2798531	Shigella sonnei
GCA_001252915.1	CXGC00000000	SAMEA1013835	SS85261_2712855	Shigella sonnei
GCA_001252995.1	CXCO00000000	SAMEA954632	ShIB48279_440830	Shigella sonnei
GCA_001253095.1	CXDF00000000	SAMEA954711	Sh1263_440934	Shigella sonnei
GCA_001253115.1	CXDL00000000	SAMEA954671	Sh2574_441043	Shigella sonnei
GCA_001253215.1	CXDD00000000	SAMEA954597	Sh54185_440883	Shigella sonnei
GCA_001253355.1	CXFC00000000	SAMEA954644	SS133628_2496121	Shigella sonnei
GCA_001253675.1	CXEU00000000	SAMEA954542	20062087_1361418	Shigella sonnei
GCA_001253635.1	CXAR00000000	SAMEA954742	Sh55623_401055	Shigella sonnei
GCA_001253935.1	CXCI00000000	SAMEA954550	ShIB2026_440828	Shigella sonnei
GCA_001253915.1	CXBH00000000	SAMEA954863	ShIB696_440728	Shigella sonnei
GCA_001253895.1	CXDM00000000	SAMEA954799	Sh476_441046	Shigella sonnei
GCA_001253975.1	CXBI00000000	SAMEA954572	ShIB1980_440738	Shigella sonnei
GCA_001254615.1	CXAS00000000	SAMEA954741	Sh60108_401056	Shigella sonnei
GCA_001254975.1	CXDY00000000	SAMEA954657	20060018_1361370	Shigella sonnei
GCA_001255135.1	CXCU00000000	SAMEA954583	Sh54210_440885	Shigella sonnei
GCA_001255175.1	CXAU00000000	SAMEA954739	Sh65179_401058	Shigella sonnei
GCA_001254495.1	CXAV00000000	SAMEA954634	Sh65387_401059	Shigella sonnei
GCA_001254295.1	CXBB00000000	SAMEA954635	ShIB694_401088	Shigella sonnei
GCA_001254195.1	CXGK00000000	SAMEA1013673	SS128220_2798530	Shigella sonnei
GCA_001254115.1	CXBW00000000	SAMEA954628	ShIB3488_440834	Shigella sonnei
GCA_001254155.1	CXAW00000000	SAMEA954639	Sh65623_401060	Shigella sonnei
GCA_001246385.1	CXEV00000000	SAMEA954541	20040924_1361417	Shigella sonnei
GCA_001246015.1	CXED00000000	SAMEA954625	20051272_1361367	Shigella sonnei
GCA_001246675.1	CXGB00000000	SAMEA1013822	SS129764_2798532	Shigella sonnei
GCA_001246585.1	CXDE00000000	SAMEA954801	Sh8883_441047	Shigella sonnei
GCA_001247735.1	CXDP00000000	SAMEA954805	Sh988743_441089	Shigella sonnei
GCA_001250155.1	CXBR00000000	SAMEA954570	ShIB1987_440754	Shigella sonnei
GCA_001249875.1	CXCQ00000000	SAMEA954605	PWR105_440878	Shigella sonnei
GCA_001249975.1	CXBY00000000	SAMEA954859	ShIB2000_440759	Shigella sonnei
GCA_001249915.1	CXCZ00000000	SAMEA954704	Sh1166_440936	Shigella sonnei
GCA_001249635.1	CXBV00000000	SAMEA954853	ShIB2008_440761	Shigella sonnei
GCA_001249475.1	CXFE00000000	SAMEA954580	SS134791_2496122	Shigella sonnei
GCA_001254035.1	CXBX00000000	SAMEA954658	ShIB2012_440763	Shigella sonnei
GCA_001249235.1	CXET00000000	SAMEA954548	20071599_1361419	Shigella sonnei
GCA_001249065.1	CXDT00000000	SAMEA954746	Sh32222_441097	Shigella sonnei
GCA_001249175.1	CXCE00000000	SAMEA954603	ShIB3277_440831	Shigella sonnei
GCA_001248315.1	CXBT00000000	SAMEA954623	ShIB3507_440835	Shigella sonnei
GCA_001248405.1	CXFZ00000000	SAMEA1013779	SS106312_2712860	Shigella sonnei
GCA_001248385.1	CXGF00000000	SAMEA1013751	SS117886_2798525	Shigella sonnei
GCA_001248625.1	CXDX00000000	SAMEA954747	Sh31382_441096	Shigella sonnei
GCA_001248255.1	CXDO00000000	SAMEA954807	Sh989560_441090	Shigella sonnei
GCA_001248175.1	CXEK00000000	SAMEA954621	CS2_1361373	Shigella sonnei
GCA_001248485.1	CXEF00000000	SAMEA954630	20040880_1361372	Shigella sonnei
GCA_001248565.1	CXFB00000000	SAMEA954659	SS132068_2496118	Shigella sonnei
GCA_001248545.1	CXGE00000000	SAMEA1013692	SS131636_2798534	Shigella sonnei
GCA_001248805.1	CXAX00000000	SAMEA954691	ShIB1_401077	Shigella sonnei
GCA_001248785.1	CXEZ00000000	SAMEA954819	CS8_1361424	Shigella sonnei
GCA_001248925.1	CXBZ00000000	SAMEA954624	ShIB3580_440836	Shigella sonnei
GCA_001248965.1	CXDU00000000	SAMEA954595	19911483_1361377	Shigella sonnei
GCA_001249045.1	CXCT00000000	SAMEA954690	Sh54190_440884	Shigella sonnei
GCA_001258415.1	CXEN00000000	SAMEA954622	20051541_1361374	Shigella sonnei
GCA_001258435.1	CXCX00000000	SAMEA954705	Sh658_440929	Shigella sonnei
GCA_001258775.1	CXCJ00000000	SAMEA954817	ShIB1995_440757	Shigella sonnei
GCA_001258815.1	CXEQ00000000	SAMEA954543	20052631_1361398	Shigella sonnei
GCA_001258795.1	CXCY00000000	SAMEA954706	Sh259_440930	Shigella sonnei
GCA_001258855.1	CXCW00000000	SAMEA954617	Sh54184_440882	Shigella sonnei
GCA_001258035.1	CXDC00000000	SAMEA954674	Sh1173_441038	Shigella sonnei
GCA_001258175.1	CXDZ00000000	SAMEA954600	20061758_1361376	Shigella sonnei
GCA_001257935.1	CXBJ00000000	SAMEA954862	ShIB695_440727	Shigella sonnei
GCA_001257875.1	CXBU00000000	SAMEA954692	ShIB2018_440826	Shigella sonnei
GCA_001257815.1	CXEM00000000	SAMEA954598	20031275_1361395	Shigella sonnei
GCA_001257695.1	CXFA00000000	SAMEA954829	CS1_1361425	Shigella sonnei
GCA_001258955.1	CXDA00000000	SAMEA954672	Sh1267_440938	Shigella sonnei
GCA_001258915.1	CXEY00000000	SAMEA954821	CS7_1361423	Shigella sonnei
GCA_001259015.1	CXGD00000000	SAMEA1013679	SS130327_2798533	Shigella sonnei
GCA_001259175.1	CXBF00000000	SAMEA954638	ShIB687_401085	Shigella sonnei
GCA_001259155.1	CXDH00000000	SAMEA954677	Sh2073_441039	Shigella sonnei
GCA_001259435.1	CXBA00000000	SAMEA954834	ShIB3_401079	Shigella sonnei
GCA_001259335.1	CXAY00000000	SAMEA954637	ShIB690_401086	Shigella sonnei
GCA_001259195.1	CXCL00000000	SAMEA954770	ShIB3300_440832	Shigella sonnei
GCA_001259615.1	CXDS00000000	SAMEA954815	Sh5827_441094	Shigella sonnei
GCA_001259655.1	CXEJ00000000	SAMEA954539	CS6_1361402	Shigella sonnei
GCA_001259515.1	CXEH00000000	SAMEA954579	20040489_1361397	Shigella sonnei
GCA_001259815.1	CXCR00000000	SAMEA954725	Sh54178_440879	Shigella sonnei
GCA_001256535.1	CXEP00000000	SAMEA954811	Sh998911_441092	Shigella sonnei
GCA_001256515.1	CXNR00000000	SAMEA954676	Sh273_441040	Shigella sonnei
GCA_001256555.1	CXCM00000000	SAMEA954855	ShIB716_440732	Shigella sonnei
GCA_001256715.1	CXDB00000000	SAMEA954713	sh1460	Shigella sonnei
GCA_001256755.1	CXGG00000000	SAMEA1013731	SS117077_2798526	Shigella sonnei
GCA_001257435.1	CXBK00000000	SAMEA954576	ShIB739_440734	Shigella sonnei
GCA_001257415.1	CXCP00000000	SAMEA954606	ShIB3599_440877	Shigella sonnei
GCA_001257235.1	CXGI00000000	SAMEA1013601	SS127858_2798529	Shigella sonnei
GCA_001256175.1	CXGA00000000	SAMEA1013801	SS105559_2712861	Shigella sonnei
GCA_001256375.1	CXCG00000000	SAMEA954569	ShIB1985_440753	Shigella sonnei
GCA_001255955.1	CXER00000000	SAMEA954545	20011685_1361400	Shigella sonnei
GCA_001255875.1	CXBP00000000	SAMEA954860	ShIB697_440729	Shigella sonnei
GCA_001255615.1	CXBD00000000	SAMEA954643	ShIB10_401080	Shigella sonnei
GCA_001255535.1	CXES00000000	SAMEA954544	19904011_1361399	Shigella sonnei
GCA_001255715.1	CXCH00000000	SAMEA954769	ShIB3374_440833	Shigella sonnei
GCA_001255655.1	CXCA00000000	SAMEA954547	ShIB2024_440827	Shigella sonnei
GCA_001255275.1	CXEB00000000	SAMEA954626	19910761_1361368	Shigella sonnei
GCA_001255195.1	CXBS00000000	SAMEA954856	ShIB1997_440758	Shigella sonnei
GCA_001255415.1	CXCB00000000	SAMEA954854	ShIB713_440731	Shigella sonnei
GCA_001255435.1	CXBE00000000	SAMEA954640	ShIB681_401083	Shigella sonnei
GCA_001261655.1	CXEX00000000	SAMEA954825	20010007_1361421	Shigella sonnei
GCA_001261375.1	CXAM00000000	SAMEA954743	Sh41191_401054	Shigella sonnei
GCA_001261215.1	CXAQ00000000	SAMEA954728	Sh74369_401064	Shigella sonnei
GCA_001260755.1	CXEW00000000	SAMEA954823	20062313_1361422	Shigella sonnei
GCA_001260795.1	CXAP00000000	SAMEA954619	Sh66470_401063	Shigella sonnei
GCA_001260775.1	CXDW00000000	SAMEA954631	20041367_1361369	Shigella sonnei
GCA_001261015.1	CXCC00000000	SAMEA954568	ShIB2493_440829	Shigella sonnei
GCA_001260415.1	CXDJ00000000	SAMEA954670	Sh4374_441044	Shigella sonnei
GCA_001260475.1	CXCD00000000	SAMEA954858	ShIB2004_440760	Shigella sonnei
GCA_001260535.1	CXDV00000000	SAMEA954594	19920319_1361378	Shigella sonnei
GCA_001260675.1	CXCS00000000	SAMEA954850	Sh54179_440880	Shigella sonnei
GCA_001260575.1	CXCK00000000	SAMEA954577	ShIB1990_440755	Shigella sonnei
GCA_001260455.1	CXEE00000000	SAMEA954546	CS20_1361401	Shigella sonnei
GCA_001260315.1	CXBC00000000	SAMEA954836	ShIB2_401078	Shigella sonnei
GCA_001260235.1	CXBM00000000	SAMEA954575	ShIB717_440733	Shigella sonnei
GCA_001260135.1	CXDR00000000	SAMEA954809	Sh9810267_441091	Shigella sonnei
GCA_001260195.1	CXGH00000000	SAMEA1013718	SS127358_2798527	Shigella sonnei

SRA Data Details

Parameter	Value
Data volume, Gbases	145
Data volume, Mbytes	87514

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