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Links from Nucleotide

Accession: PRJNA280380 ID: 280380

Oryza sativa Japonica Group (Japanese rice)

Host transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola

See Genome Information for Oryza sativa
We performed RNA-Seq of leaves of Oryza sativa L. ssp. japonica cv. Nipponbare 48 hours after inoculation with 10 geographically diverse strains of Xanthomonas oryzae pv. More...
AccessionPRJNA280380; GEO: GSE67588
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismOryza sativa Japonica Group[Taxonomy ID: 39947]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa Japonica Group
PublicationsWilkins KE et al., "TAL effectors and activation of predicted host targets distinguish Asian from African strains of the rice pathogen Xanthomonas oryzae pv. oryzicola while strict conservation suggests universal importance of five TAL effectors.", Front Plant Sci, 2015;6:536
SubmissionRegistration date: 30-Jun-2015
Bogdanove Lab, Plant Pathology and Plant-Microbe Biology, Cornell University
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Genomic DNA)9
SRA Experiments33
Protein Sequences30383
Publications
PubMed1
PMC1
Other datasets
BioSample41
GEO DataSets1
Assembly8
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes7
SRA Data Details
ParameterValue
Data volume, Gbases88
Data volume, Mbytes58892

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