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Accession: PRJEB2274 ID: 203845

Bordetella diversity project

http://www.sanger.ac.uk/resources/downloads/bacteria/bordetella.html This data is part of a pre-publication release. More...
AccessionPRJEB2274
Data TypeGenome sequencing and assembly
ScopeMonoisolate
Publications
  • Sealey KL et al., "Genomic analysis of isolates from the United Kingdom 2012 pertussis outbreak reveals that vaccine antigen genes are unusually fast evolving.", J Infect Dis, 2015 Jul 15;212(2):294-301
  • Bart MJ et al., "Global population structure and evolution of Bordetella pertussis and their relationship with vaccination.", mBio, 2014 Apr 22;5(2):e01074
SubmissionRegistration date: 21-May-2013
Wellcome Sanger Institute
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)228642
WGS master278
SRA Experiments332
Protein Sequences979575
Publications
PubMed2
PMC1
Other datasets
BioSample319
Assembly278
Assembly details:
Assembly levelNumber of Assemblies
278
278
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001333095.1ScaffoldCFZR00000000SAMEA751450
B112
GCA_001333075.1ScaffoldCFWM00000000SAMEA751449
B122
GCA_001333055.1ScaffoldCFWR00000000SAMEA751447
B127
GCA_001333035.1ScaffoldCIBK00000000SAMEA751446
B266
GCA_001333015.1ScaffoldCIGT00000000SAMEA751442
B276
GCA_001332995.1ScaffoldCFYQ00000000SAMEA751441
B271
GCA_001332975.1ScaffoldCHKU00000000SAMEA751440
B270
GCA_001332955.1ScaffoldCIGY00000000SAMEA751439
B273
GCA_001332935.1ScaffoldCHKZ00000000SAMEA751438
B272
GCA_001332915.1ScaffoldCFXE00000000SAMEA751434
B314
GCA_001333935.1ScaffoldCGHJ00000000SAMEA751521
B025
GCA_001333915.1ScaffoldCFZG00000000SAMEA751520
B023
GCA_001333895.1ScaffoldCGFV00000000SAMEA751518
B010
GCA_001333875.1ScaffoldCGFH00000000SAMEA751517
B008
GCA_001333855.1ScaffoldCFXQ00000000SAMEA751516
B007
GCA_001333835.1ScaffoldCGHF00000000SAMEA751515
B030
GCA_001333815.1ScaffoldCIKA00000000SAMEA751513
B016
GCA_001333795.1ScaffoldCHFQ00000000SAMEA751512
B017
GCA_001333775.1ScaffoldCFZP00000000SAMEA751510
B032
GCA_001333755.1ScaffoldCGFQ00000000SAMEA751505
B164
GCA_001333735.1ScaffoldCFZH00000000SAMEA751504
B275
GCA_001333715.1ScaffoldCFYT00000000SAMEA751501
B021
GCA_001333695.1ScaffoldCGHR00000000SAMEA751500
B029
GCA_001333675.1ScaffoldCFYN00000000SAMEA751499
B020
GCA_001333655.1ScaffoldCGHS00000000SAMEA751498
B119
GCA_001333635.1ScaffoldCGFI00000000SAMEA751496
B118
GCA_001333615.1ScaffoldCFYD00000000SAMEA751493
B130
GCA_001333595.1ScaffoldCIKU00000000SAMEA751492
B134
GCA_001333575.1ScaffoldCFYG00000000SAMEA751490
B136
GCA_001333555.1ScaffoldCHFH00000000SAMEA751488
B138
GCA_001333535.1ScaffoldCFXT00000000SAMEA751486
B140
GCA_001333515.1ScaffoldCHLA00000000SAMEA751484
B167
GCA_001333495.1ScaffoldCFWW00000000SAMEA751482
B001
GCA_001333475.1ScaffoldCVJM00000000SAMEA751481
B296
GCA_001333455.1ScaffoldCFXJ00000000SAMEA751480
B050
GCA_001333435.1ScaffoldCGHO00000000SAMEA751479
B022
GCA_001333415.1ScaffoldCVJH00000000SAMEA751478
B295
GCA_001333395.1ScaffoldCFXV00000000SAMEA751474
B042
GCA_001333375.1ScaffoldCGAE00000000SAMEA751473
B027
GCA_001333355.1ScaffoldCGFS00000000SAMEA751471
B048
GCA_001333335.1ScaffoldCVIX00000000SAMEA751469
B298
GCA_001333315.1ScaffoldCVJC00000000SAMEA751468
B297
GCA_001333295.1ScaffoldCVJE00000000SAMEA751465
B302
GCA_001333275.1ScaffoldCVJA00000000SAMEA751464
B301
GCA_001333255.1ScaffoldCVIZ00000000SAMEA751463
B300
GCA_001333235.1ScaffoldCVJB00000000SAMEA751462
B299
GCA_001333215.1ScaffoldCIKQ00000000SAMEA751461
B058
GCA_001333195.1ScaffoldCFWI00000000SAMEA751460
B278
GCA_001333175.1ScaffoldCFYO00000000SAMEA751459
B049
GCA_001333155.1ScaffoldCFNR00000000SAMEA751458
B277
GCA_001333135.1ScaffoldCHKV00000000SAMEA751455
B059
GCA_001333115.1ScaffoldCHFO00000000SAMEA751454
B280
GCA_001332895.1ScaffoldCFWO00000000SAMEA751433
B064
GCA_001332875.1ScaffoldCVJJ00000000SAMEA751432
B290
GCA_001332855.1ScaffoldCVJK00000000SAMEA751431
B291
GCA_001332835.1ScaffoldCVIY00000000SAMEA751430
B292
GCA_001332815.1ScaffoldCGAH00000000SAMEA751428
B067
GCA_001332795.1ScaffoldCVJG00000000SAMEA751425
B293
GCA_001332775.1ScaffoldCVJO00000000SAMEA751424
B294
GCA_001332755.1ScaffoldCVJF00000000SAMEA751423
B303
GCA_001332735.1ScaffoldCIAZ00000000SAMEA751415
B104
GCA_001332715.1ScaffoldCFWH00000000SAMEA751409
B101
GCA_001332695.1ScaffoldCFZW00000000SAMEA751407
B334
GCA_001332675.1ScaffoldCVIT00000000SAMEA751401
B304
GCA_001332655.1ScaffoldCFXW00000000SAMEA751382
B331
GCA_001332635.1ScaffoldCFYX00000000SAMEA751380
B252
GCA_001332615.1ScaffoldCGFP00000000SAMEA751374
B099
GCA_001332595.1ScaffoldCFYV00000000SAMEA751372
B100
GCA_001332575.1ScaffoldCGFA00000000SAMEA751368
B316
GCA_001332555.1ScaffoldCFZD00000000SAMEA751362
B187
GCA_001332535.1ScaffoldCFXS00000000SAMEA751360
B175
GCA_001332515.1ScaffoldCFYI00000000SAMEA751357
B255
GCA_001332495.1ScaffoldCHFL00000000SAMEA751354
B246
GCA_001332475.1ScaffoldCHLC00000000SAMEA751343
B258
GCA_001332455.1ScaffoldCGHL00000000SAMEA751334
B249
GCA_001332435.1ScaffoldCFYM00000000SAMEA751332
B251
GCA_001332415.1ScaffoldCVJL00000000SAMEA751329
B306
GCA_001332395.1ScaffoldCVJN00000000SAMEA751327
B307
GCA_001332375.1ScaffoldCVJI00000000SAMEA751325
B305
GCA_001332355.1ScaffoldCVJP00000000SAMEA751323
B288
GCA_001332335.1ScaffoldCFXH00000000SAMEA751318
B250
GCA_001332315.1ScaffoldCVJD00000000SAMEA751316
B289
GCA_001332295.1ScaffoldCGAC00000000SAMEA751314
B247
GCA_001332275.1ScaffoldCFXA00000000SAMEA751309
B262
GCA_001332255.1ScaffoldCFXY00000000SAMEA751294
B256
GCA_001332235.1ScaffoldCGHP00000000SAMEA751290
B060
GCA_001332215.1ScaffoldCFYY00000000SAMEA751288
B257
GCA_001332195.1ScaffoldCFWV00000000SAMEA751286
B263
GCA_001332175.1ScaffoldCFZK00000000SAMEA751257
B329
GCA_001332155.1ScaffoldCFXZ00000000SAMEA751248
B327
GCA_001332135.1ScaffoldCGFT00000000SAMEA751246
B324
GCA_001332115.1ScaffoldCHFG00000000SAMEA751244
B322
GCA_001332095.1ScaffoldCHFJ00000000SAMEA751222
B053
GCA_001332075.1ScaffoldCFYE00000000SAMEA751218
B054
GCA_001332055.1ScaffoldCFZX00000000SAMEA751214
B055
GCA_001332035.1ScaffoldCFZC00000000SAMEA751209
B052
GCA_001332015.1ScaffoldCFZY00000000SAMEA751203
B056
GCA_001331995.1ScaffoldCFWS00000000SAMEA751196
B057
GCA_001331975.1ScaffoldCFZS00000000SAMEA751189
B078
GCA_001331955.1ScaffoldCFXO00000000SAMEA751185
B063
GCA_001331915.1ScaffoldCHKT00000000SAMEA751184
B006
GCA_001331895.1ScaffoldCGHU00000000SAMEA751182
B320
GCA_001331875.1ScaffoldCGAG00000000SAMEA751181
B313
GCA_001331855.1ScaffoldCGHD00000000SAMEA751175
B069
GCA_001331835.1ScaffoldCIBC00000000SAMEA751173
B089
GCA_001331815.1ScaffoldCHLB00000000SAMEA751172
B308
GCA_001331795.1ScaffoldCFXL00000000SAMEA751171
B319
GCA_001331775.1ScaffoldCFZQ00000000SAMEA751170
B335
GCA_001331755.1ScaffoldCHKX00000000SAMEA751167
B041
GCA_001331735.1ScaffoldCFYR00000000SAMEA751166
B285
GCA_001331715.1ScaffoldCFNP00000000SAMEA751165
B077
GCA_001331695.1ScaffoldCGFM00000000SAMEA751160
B090
GCA_001331675.1ScaffoldCFWN00000000SAMEA751159
B075
GCA_001331655.1ScaffoldCFYU00000000SAMEA751157
B073
GCA_001331635.1ScaffoldCGFN00000000SAMEA751155
B038
GCA_001331615.1ScaffoldCFZF00000000SAMEA751150
B085
GCA_001331595.1ScaffoldCIGR00000000SAMEA751149
B086
GCA_001331575.1ScaffoldCIJJ00000000SAMEA751144
B079
GCA_001331555.1ScaffoldCFXR00000000SAMEA751143
B080
GCA_001331535.1ScaffoldCGAA00000000SAMEA751139
B123
GCA_001331515.1ScaffoldCFKX00000000SAMEA751138
B121
GCA_001331495.1ScaffoldCGHM00000000SAMEA751137
B111
GCA_001331475.1ScaffoldCGAI00000000SAMEA751134
B012
GCA_001331455.1ScaffoldCGHV00000000SAMEA751133
B094
GCA_001331435.1ScaffoldCGAK00000000SAMEA751132
B091
GCA_001331415.1ScaffoldCGAD00000000SAMEA751131
B002
GCA_001331395.1ScaffoldCFYC00000000SAMEA751128
B092
GCA_001331375.1ScaffoldCHFP00000000SAMEA751125
B003
GCA_001331355.1ScaffoldCFXI00000000SAMEA2031986
B147
GCA_001331335.1ScaffoldCHFK00000000SAMEA2015295
B106
GCA_001331315.1ScaffoldCFYW00000000SAMEA2015294
B107
GCA_001331295.1ScaffoldCFXM00000000SAMEA2015293
B110
GCA_001331275.1ScaffoldCFXX00000000SAMEA1970817
B159
GCA_001331255.1ScaffoldCFYJ00000000SAMEA1933007
B155
GCA_001331235.1ScaffoldCFYA00000000SAMEA1932947
B341
GCA_001331215.1ScaffoldCFXC00000000SAMEA1931871
B143
GCA_001331195.1ScaffoldCGHH00000000SAMEA1931806
B154
GCA_001331175.1ScaffoldCIAX00000000SAMEA1931804
B157
GCA_001331155.1ScaffoldCFYF00000000SAMEA1931748
B152
GCA_001331135.1ScaffoldCHFN00000000SAMEA1931720
B236
GCA_001331115.1ScaffoldCGFF00000000SAMEA1931718
B161
GCA_001331095.1ScaffoldCGAF00000000SAMEA1931352
B144
GCA_001331075.1ScaffoldCFZO00000000SAMEA1931351
B202
GCA_001331055.1ScaffoldCIGO00000000SAMEA1931348
B220
GCA_001331035.1ScaffoldCFWZ00000000SAMEA1931347
B109
GCA_001331015.1ScaffoldCGAJ00000000SAMEA1931346
B043
GCA_001330995.1ScaffoldCGAB00000000SAMEA1931344
B162
GCA_001330975.1ScaffoldCGFZ00000000SAMEA1931276
B287
GCA_001191795.1ScaffoldCSRZ00000000SAMEA1931747
B184
GCA_001192135.1ScaffoldCSQZ00000000SAMEA1931867
B174
GCA_001192115.1ScaffoldCSML00000000SAMEA751503
B265
GCA_001210865.1ScaffoldCSPE00000000SAMEA751364
B189
GCA_001210765.1ScaffoldCSNY00000000SAMEA751145
B082
GCA_001210905.1ScaffoldCSLV00000000SAMEA1933040
B221
GCA_001210485.1ScaffoldCSRD00000000SAMEA751485
B139
GCA_001210145.1ScaffoldCSSM00000000SAMEA751174
B081
GCA_001210185.1ScaffoldCSNJ00000000SAMEA751508
B015
GCA_001210045.1ScaffoldCSPR00000000SAMEA751176
B312
GCA_001209985.1ScaffoldCSSY00000000SAMEA1931721
B151
GCA_001209845.1ScaffoldCSMQ00000000SAMEA751452
B125
GCA_001208145.1ScaffoldCSOS00000000SAMEA751507
B045
GCA_001208285.1ScaffoldCSOO00000000SAMEA751261
B337
GCA_001208205.1ScaffoldCSOY00000000SAMEA751136
B116
GCA_001208185.1ScaffoldCSOT00000000SAMEA1931868
B156
GCA_001209245.1ScaffoldCSPQ00000000SAMEA1931345
B342
GCA_001209065.1ScaffoldCSMD00000000SAMEA751494
B286
GCA_001209025.1ScaffoldCSMN00000000SAMEA1931450
B317
GCA_001208905.1ScaffoldCSOL00000000SAMEA751177
B310
GCA_001207095.1ScaffoldCSMR00000000SAMEA751451
B126
GCA_001206935.1ScaffoldCSSN00000000SAMEA751411
B102
GCA_001206915.1ScaffoldCSOJ00000000SAMEA751445
B268
GCA_001206895.1ScaffoldCSOP00000000SAMEA751183
B026
GCA_001208005.1ScaffoldCSSI00000000SAMEA751163
B071
GCA_001208065.1ScaffoldCSRU00000000SAMEA751350
B096
GCA_001207905.1ScaffoldCSLW00000000SAMEA751141
B124
GCA_001207695.1ScaffoldCSPU00000000SAMEA751497
B114
GCA_001207655.1ScaffoldCSMZ00000000SAMEA751426
B062
GCA_001206335.1ScaffoldCSQV00000000SAMEA1931536
B068
GCA_001206235.1ScaffoldCSMJ00000000SAMEA751156
B072
GCA_001205915.1ScaffoldCSNU00000000SAMEA751522
B132
GCA_001206615.1ScaffoldCSQN00000000SAMEA751292
B259
GCA_001205335.1ScaffoldCSNE00000000SAMEA1931801
B033
GCA_001205275.1ScaffoldCSSJ00000000SAMEA2035349
B178
GCA_001205255.1ScaffoldCSLX00000000SAMEA751345
B098
GCA_001212645.1ScaffoldCSPY00000000SAMEA1931799
B343
GCA_001212625.1ScaffoldCSPT00000000SAMEA751180
B163
GCA_001212045.1ScaffoldCSQT00000000SAMEA751514
B024
GCA_001211985.1ScaffoldCSPP00000000SAMEA751466
B284
GCA_001211945.1ScaffoldCSND00000000SAMEA751491
B133
GCA_001211905.1ScaffoldCSMX00000000SAMEA751168
B333
GCA_001212525.1ScaffoldCSMY00000000SAMEA751348
B097
GCA_001212505.1ScaffoldCSRK00000000SAMEA751339
B254
GCA_001212285.1ScaffoldCSSD00000000SAMEA751161
B093
GCA_001211805.1ScaffoldCSNH00000000SAMEA1931573
B336
GCA_001211785.1ScaffoldCSSK00000000SAMEA751179
B173
GCA_001211725.1ScaffoldCSMA00000000SAMEA751148
B083
GCA_001211225.1ScaffoldCSOK00000000SAMEA1931537
B315
GCA_001211165.1ScaffoldCSQS00000000SAMEA751437
B274
GCA_001211005.1ScaffoldCSQM00000000SAMEA751457
B281
GCA_001204135.1ScaffoldCSQU00000000SAMEA751252
B325
GCA_001203935.1ScaffoldCSRE00000000SAMEA751511
B018
GCA_001203895.1ScaffoldCSQX00000000SAMEA751443
B269
GCA_001204675.1ScaffoldCSSH00000000SAMEA751403
B037
GCA_001204435.1ScaffoldCSNA00000000SAMEA1931802
B108
GCA_001203235.1ScaffoldCSRX00000000SAMEA751405
B040
GCA_001203115.1ScaffoldCSRB00000000SAMEA751470
B031
GCA_001202455.1ScaffoldCSSS00000000SAMEA751519
B011
GCA_001202375.1ScaffoldCSQY00000000SAMEA751126
B142
GCA_001203155.1ScaffoldCSLY00000000SAMEA751444
B267
GCA_001202875.1ScaffoldCSRI00000000SAMEA751158
B074
GCA_001202695.1ScaffoldCSPI00000000SAMEA1931350
B170
GCA_001202575.1ScaffoldCSOF00000000SAMEA751413
B103
GCA_001202515.1ScaffoldCSMW00000000SAMEA751154
B051
GCA_001202495.1ScaffoldCSOA00000000SAMEA751127
B141
GCA_001201995.1ScaffoldCSSC00000000SAMEA751429
B066
GCA_001201635.1ScaffoldCSNF00000000SAMEA1931507
B019
GCA_001201595.1ScaffoldCSQQ00000000SAMEA751487
B137
GCA_001201395.1ScaffoldCSOE00000000SAMEA751164
B076
GCA_001201375.1ScaffoldCSSG00000000SAMEA751435
B279
GCA_001201315.1ScaffoldCSMC00000000SAMEA751307
B264
GCA_001201155.1ScaffoldCSMV00000000SAMEA1986111
B009
GCA_001200735.1ScaffoldCSRS00000000SAMEA751467
B283
GCA_001200675.1ScaffoldCSRR00000000SAMEA751142
B115
GCA_001200475.1ScaffoldCSSU00000000SAMEA751129
B005
GCA_001200435.1ScaffoldCSRF00000000SAMEA2015292
B340
GCA_001200315.1ScaffoldCSQE00000000SAMEA1986110
B339
GCA_001200175.1ScaffoldCSRM00000000SAMEA751162
B070
GCA_001200095.1ScaffoldCSQO00000000SAMEA751456
B282
GCA_001200055.1ScaffoldCSQG00000000SAMEA751359
B261
GCA_001199955.1ScaffoldCSNK00000000SAMEA1931870
B237
GCA_001199415.1ScaffoldCSNL00000000SAMEA751178
B309
GCA_001199115.1ScaffoldCSPV00000000SAMEA1931800
B338
GCA_001198955.1ScaffoldCSNP00000000SAMEA751421
B036
GCA_001198815.1ScaffoldCSSO00000000SAMEA751152
B087
GCA_001198715.1ScaffoldCSNS00000000SAMEA751506
B044
GCA_001198375.1ScaffoldCSSR00000000SAMEA751475
B039
GCA_001198355.1ScaffoldCSRO00000000SAMEA751146
B065
GCA_001198195.1ScaffoldCSRG00000000SAMEA751337
B034
GCA_001198095.1ScaffoldCSRT00000000SAMEA751341
B332
GCA_001197815.1ScaffoldCSNN00000000SAMEA751263
B197
GCA_001197455.1ScaffoldCSPB00000000SAMEA751453
B113
GCA_001197335.1ScaffoldCSNG00000000SAMEA1933033
B153
GCA_001197495.1ScaffoldCSPK00000000SAMEA751296
B260
GCA_001196995.1ScaffoldCSOC00000000SAMEA751255
B326
GCA_001196975.1ScaffoldCSLZ00000000SAMEA751477
B046
GCA_001196855.1ScaffoldCSQD00000000SAMEA751130
B004
GCA_001196575.1ScaffoldCSPS00000000SAMEA751417
B105
GCA_001196455.1ScaffoldCSRW00000000SAMEA751259
B330
GCA_001196395.1ScaffoldCSNV00000000SAMEA2015299
B204
GCA_001196085.1ScaffoldCSRQ00000000SAMEA751239
B318
GCA_001196005.1ScaffoldCSMF00000000SAMEA1931798
B206
GCA_001195885.1ScaffoldCSNZ00000000SAMEA751151
B088
GCA_001195625.1ScaffoldCSOB00000000SAMEA1933004
B160
GCA_001195265.1ScaffoldCSPG00000000SAMEA751472
B028
GCA_001195245.1ScaffoldCSPW00000000SAMEA751320
B248
GCA_001194985.1ScaffoldCSOI00000000SAMEA751140
B117
GCA_001194605.1ScaffoldCSOR00000000SAMEA2015291
B199
GCA_001194565.1ScaffoldCSRA00000000SAMEA751448
B128
GCA_001194225.1ScaffoldCSOD00000000SAMEA751489
B135
GCA_001194095.1ScaffoldCSOH00000000SAMEA751241
B323
GCA_001193935.1ScaffoldCSON00000000SAMEA751147
B084
GCA_001193855.1ScaffoldCSMG00000000SAMEA751502
B035
GCA_001193835.1ScaffoldCSQI00000000SAMEA751353
B095
GCA_001193455.1ScaffoldCSMK00000000SAMEA751250
B328
GCA_001193515.1ScaffoldCSQL00000000SAMEA751169
B311
GCA_001193155.1ScaffoldCSSA00000000SAMEA751509
B014
GCA_001192535.1ScaffoldCSPZ00000000SAMEA1986112
B149
GCA_001192455.1ScaffoldCSMP00000000SAMEA751366
B201
GCA_001262195.1ScaffoldCSPD00000000SAMEA751153
B061
GCA_900067715.2ScaffoldCGIC00000000SAMEA751476
B047
GCA_900683865.1ScaffoldCAACYM000000000SAMEA742877
Bel011
GCA_900683905.1ScaffoldCAACYN000000000SAMEA742906
Bel006
GCA_900683845.1ScaffoldCAACYL000000000SAMEA742884
Bel007
GCA_901002635.1ScaffoldCAAJNW000000000SAMEA742890
Bel010
GCA_901002585.1ScaffoldCAAJNT000000000SAMEA742888
Bel004
GCA_901002525.1ScaffoldCAAJNR000000000SAMEA742896
Bel002
GCA_901002515.1ScaffoldCAAJNP000000000SAMEA742892
Bel001
GCA_901002025.1ScaffoldCAAJLL000000000SAMEA742901
Bel005
SRA Data Details
ParameterValue
Data volume, Gbases105
Data volume, Mbytes63606

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