Vibrio cholerae (ID 263670) - BioProject

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Accession: PRJNA263670 ID: 263670

Vibrio cholerae

Vibrio cholerae Genome sequencing and assembly

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-Track the emergence and spread of V. cholerae 01 during the Haitian epidemic from 2010-2012. More...

Accession	PRJNA263670
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Vibrio cholerae[Taxonomy ID: 666] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae
Publications	Azarian T et al., "Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection.", mBio, 2014 Dec 23;5(6)
Grants	"Cholera Transmission in Gressier Region, Haiti" (Grant ID AI097405, National Institute of Health)
Submission	Registration date: 3-Dec-2014 University of Florida
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4690
WGS master	36
Genomic DNA	4
Protein Sequences	7201
Publications
PubMed	1
PMC	1
Other datasets
BioSample	38
Assembly	38
Supplementary data
Base modification	4

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Scaffold

Total

2
36
38

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_001854425.1		2	SAMN04168691	Env-390	Vibrio cholerae
GCA_000788715.2		2	SAMN03104885	2012Env-9	Vibrio cholerae
GCA_000788815.1	JSUC00000000		SAMN03104870	2012HC-34	Vibrio cholerae
GCA_000788795.1	JSTX00000000		SAMN03104866	2012HC-24	Vibrio cholerae
GCA_000788775.1	JSTY00000000		SAMN03104875	2012HC-25	Vibrio cholerae
GCA_000788755.1	JSTJ00000000		SAMN03104884	2012Env-92	Vibrio cholerae
GCA_000788655.1	JSTC00000000		SAMN03104879	2012Env-131	Vibrio cholerae
GCA_000788635.1	JSTB00000000		SAMN03104857	2010AA-151	Vibrio cholerae
GCA_000788615.1	JSTA00000000		SAMN03104856	2010AA-150	Vibrio cholerae
GCA_000788595.1	JSSZ00000000		SAMN03104855	2010AA-148	Vibrio cholerae
GCA_000788935.1	JSUA00000000		SAMN03104868	2012HC-32	Vibrio cholerae
GCA_000788915.1	JSTS00000000		SAMN03104863	2012HC-17	Vibrio cholerae
GCA_000788895.1	JSTT00000000		SAMN03104874	2012HC-18	Vibrio cholerae
GCA_000788875.1	JSTL00000000		SAMN03104872	2012HC-07	Vibrio cholerae
GCA_000788855.1	JSTK00000000		SAMN03104878	2012Env-94	Vibrio cholerae
GCA_000788835.1	JSTZ00000000		SAMN03104867	2012HC-31	Vibrio cholerae
GCA_000788735.1	JSTI00000000		SAMN03104877	2012Env-90	Vibrio cholerae
GCA_000788695.1	JSTG00000000		SAMN03104880	2012Env-326	Vibrio cholerae
GCA_000788675.1	JSTF00000000		SAMN03104883	2012Env-32	Vibrio cholerae
GCA_000788495.1	JSTD00000000		SAMN03104881	2012Env-2	Vibrio cholerae
GCA_000788425.1	JSDO00000000		SAMN03103686	2010AA-142	Vibrio cholerae
GCA_000788435.1	JSSV00000000		SAMN03104851	2010AA-144	Vibrio cholerae
GCA_000788415.1	JSCC00000000		SAMN03104850	2010AA-143	Vibrio cholerae
GCA_000788575.1	JSSY00000000		SAMN03104854	2010AA-147	Vibrio cholerae
GCA_000788555.1	JSSX00000000		SAMN03104853	2010AA-146	Vibrio cholerae
GCA_000788535.1	JSSW00000000		SAMN03104852	2010AA-145	Vibrio cholerae
GCA_000788515.1	JSTE00000000		SAMN03104882	2012Env-25	Vibrio cholerae
GCA_000789015.1	JSTW00000000		SAMN03104865	2012HC-22	Vibrio cholerae
GCA_000788995.1	JSTV00000000		SAMN03104864	2012HC-21	Vibrio cholerae
GCA_000788975.1	JSUB00000000		SAMN03104869	2012HC-33	Vibrio cholerae
GCA_000788955.1	JSUD00000000		SAMN03104871	2012HC-35	Vibrio cholerae
GCA_000789155.1	JSTP00000000		SAMN03104860	2012HC-12	Vibrio cholerae
GCA_000789135.1	JSTN00000000		SAMN03104858	2012HC-10	Vibrio cholerae
GCA_000789115.1	JSTM00000000		SAMN03104873	2012HC-08	Vibrio cholerae
GCA_000789095.1	JSTU00000000		SAMN03104876	2012HC-19	Vibrio cholerae
GCA_000789075.1	JSTQ00000000		SAMN03104861	2012HC-15	Vibrio cholerae
GCA_000789055.1	JSTR00000000		SAMN03104862	2012HC-16	Vibrio cholerae
GCA_000789035.1	JSTO00000000		SAMN03104859	2012HC-11	Vibrio cholerae

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Vibrio cholerae

Vibrio cholerae Genome sequencing and assembly

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