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Accession: PRJNA73111 ID: 73111

Yersinia pestis biovar Orientalis str. AS200901434

Genomic biosurveillance of 2009 epizootic Yersinia pestis in New Mexico, USA

See Genome Information for Yersinia pestis
This project aims to characterize the genetic diversity of a geographically confined subset of North American Yersinia pestis strains.
AccessionPRJNA73111
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismYersinia pestis biovar Orientalis str. AS200901434[Taxonomy ID: 1084233]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia pestis; Yersinia pestis biovar Orientalis str. AS200901434
PublicationsGibbons HS et al., "Comparative genomics of 2009 seasonal plague (Yersinia pestis) in New Mexico.", PLoS One, 2012;7(2):e31604
Grants
  • "ECBC Genomic Sequencing Center" (Grant ID CB2847, Defense Threat Reduction Agency)
SubmissionRegistration date: 22-Mar-2012
US Army Edgewood Chemical Biological Center
RelevanceMedical
Locus Tag PrefixKOC
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)237
WGS master1
SRA Experiments1
Publications
PubMed1
PMC1
Other datasets
BioSample1
Assembly1
SRA Data Details
ParameterValue
Data volume, Mbases262
Data volume, Mbytes576

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