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Accession: PRJNA1052970 ID: 1052970

freshwater metagenome

Metagenomic Sequencing of freshwater lakes in Europe

Metagenome Sequencing was carrried out for 44 lakes , spread across the European continent
AccessionPRJNA1052970
Data TypeGenome sequencing
ScopeEnvironment
Organismfreshwater metagenome[Taxonomy ID: 449393]
unclassified sequences; metagenomes; ecological metagenomes; freshwater metagenome
PublicationsShah M et al., "Genome-resolved metagenomics reveals the effect of nutrient availability on bacterial genomic properties across 44 European freshwater lakes.", Environ Microbiol, 2024 Jun;26(6):e16634
Grants
  • "Differential potential of metabarcoding, metatranscriptomics, and metagenomics for the assessment of lake water quality" (Grant ID -, Bauer Stemmler Stiftung)
SubmissionRegistration date: 15-Dec-2023
University of Duisburg Essen
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)363
SRA Experiments44
Publications
PubMed1
Other datasets
BioSample407
Assembly363
Assembly details:
Assembly levelNumber of Assemblies
363
363
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_040400005.1ScaffoldJBBARC000000000SAMN40135933
EUL_209
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EUL_270
GCA_040398585.1ScaffoldJBBATW000000000SAMN40136005
EUL_281
GCA_040403515.1ScaffoldJBBAKP000000000SAMN40135764
EUL_040
GCA_040403475.1ScaffoldJBBAKO000000000SAMN40135763
EUL_039
GCA_040400895.1ScaffoldJBBAPL000000000SAMN40135890
EUL_166
GCA_040402615.1ScaffoldJBBAMH000000000SAMN40135808
EUL_084
GCA_040402595.1ScaffoldJBBAMI000000000SAMN40135809
EUL_085
GCA_040403455.1ScaffoldJBBAKS000000000SAMN40135767
EUL_043
GCA_040403415.1ScaffoldJBBAKU000000000SAMN40135769
EUL_045
GCA_040403395.1ScaffoldJBBAKR000000000SAMN40135766
EUL_042
GCA_040403375.1ScaffoldJBBAKV000000000SAMN40135770
EUL_046
GCA_040403355.1ScaffoldJBBAKT000000000SAMN40135768
EUL_044
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EUL_049
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EUL_050
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EUL_290
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EUL_083
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EUL_362
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EUL_212
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EUL_354
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EUL_355
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EUL_357
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EUL_356
GCA_040398305.1ScaffoldJBBAUI000000000SAMN40136017
EUL_293
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EUL_320
GCA_040402775.1ScaffoldJBBAMA000000000SAMN40135801
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GCA_040403495.1ScaffoldJBBAKM000000000SAMN40135761
EUL_037
GCA_040403535.1ScaffoldJBBAKL000000000SAMN40135760
EUL_036
GCA_040402995.1ScaffoldJBBALN000000000SAMN40135788
EUL_064
GCA_040403015.1ScaffoldJBBALM000000000SAMN40135787
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GCA_040402935.1ScaffoldJBBALP000000000SAMN40135790
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GCA_040402875.1ScaffoldJBBALT000000000SAMN40135794
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GCA_040403785.1ScaffoldJBBAKA000000000SAMN40135749
EUL_025
GCA_040399745.1ScaffoldJBBARP000000000SAMN40135946
EUL_222
GCA_040398075.1ScaffoldJBBAUR000000000SAMN40136026
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GCA_040402735.1ScaffoldJBBALZ000000000SAMN40135800
EUL_076
GCA_040399705.1ScaffoldJBBARQ000000000SAMN40135947
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GCA_040400065.1ScaffoldJBBAQY000000000SAMN40135929
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GCA_040400185.1ScaffoldJBBAQU000000000SAMN40135925
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EUL_200
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EUL_199
GCA_040400125.1ScaffoldJBBAQV000000000SAMN40135926
EUL_202
GCA_040400105.1ScaffoldJBBAQW000000000SAMN40135927
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GCA_040399885.1ScaffoldJBBARI000000000SAMN40135939
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GCA_040399905.1ScaffoldJBBARG000000000SAMN40135937
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EUL_146
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EUL_144
GCA_040401405.1ScaffoldJBBAOO000000000SAMN40135867
EUL_143
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EUL_145
GCA_040402715.1ScaffoldJBBAMB000000000SAMN40135802
EUL_078
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EUL_080
GCA_040402675.1ScaffoldJBBAMC000000000SAMN40135803
EUL_079
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EUL_081
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EUL_093
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EUL_094
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EUL_098
GCA_040402195.1ScaffoldJBBANC000000000SAMN40135829
EUL_105
GCA_040402175.1ScaffoldJBBANB000000000SAMN40135828
EUL_104
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EUL_107
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EUL_108
GCA_040402635.1ScaffoldJBBAMF000000000SAMN40135806
EUL_082
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EUL_217
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EUL_228
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EUL_261
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EUL_102
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EUL_099
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EUL_096
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EUL_100
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EUL_097
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EUL_095
GCA_040400605.1ScaffoldJBBAPZ000000000SAMN40135904
EUL_180
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EUL_225
GCA_040399645.1ScaffoldJBBARR000000000SAMN40135948
EUL_224
GCA_040398625.1ScaffoldJBBATS000000000SAMN40136001
EUL_277
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EUL_278
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EUL_279
GCA_040398365.1ScaffoldJBBAUH000000000SAMN40136016
EUL_292
GCA_040397705.1ScaffoldJBBAVK000000000SAMN40136045
EUL_321
GCA_040403335.1ScaffoldJBBAKW000000000SAMN40135771
EUL_047
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EUL_012
GCA_040404005.1ScaffoldJBBAJO000000000SAMN40135737
EUL_013
GCA_040403965.1ScaffoldJBBAJP000000000SAMN40135738
EUL_014
GCA_040403715.1ScaffoldJBBAKE000000000SAMN40135753
EUL_029
GCA_040403695.1ScaffoldJBBAKD000000000SAMN40135752
EUL_028
GCA_040403255.1ScaffoldJBBALA000000000SAMN40135775
EUL_051
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EUL_341
GCA_040397345.1ScaffoldJBBAWC000000000SAMN40136063
EUL_339
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EUL_340
GCA_040403215.1ScaffoldJBBALD000000000SAMN40135778
EUL_054
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EUL_061
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EUL_056
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EUL_055
GCA_040403135.1ScaffoldJBBALG000000000SAMN40135781
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EUL_059
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EUL_119
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EUL_122
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GCA_040397885.1ScaffoldJBBAVC000000000SAMN40136037
EUL_313
GCA_040397905.1ScaffoldJBBAVE000000000SAMN40136039
EUL_315
GCA_040397865.1ScaffoldJBBAVB000000000SAMN40136036
EUL_312
GCA_040398145.1ScaffoldJBBAUT000000000SAMN40136028
EUL_304
GCA_040397805.1ScaffoldJBBAVG000000000SAMN40136041
EUL_317
GCA_040399065.1ScaffoldJBBASU000000000SAMN40135977
EUL_253
GCA_040401635.1ScaffoldJBBAOD000000000SAMN40135856
EUL_132
GCA_040401615.1ScaffoldJBBAOG000000000SAMN40135859
EUL_135
GCA_040400245.1ScaffoldJBBAQO000000000SAMN40135919
EUL_195
GCA_040400305.1ScaffoldJBBAQL000000000SAMN40135916
EUL_192
GCA_040400285.1ScaffoldJBBAQN000000000SAMN40135918
EUL_194
GCA_040400345.1ScaffoldJBBAQM000000000SAMN40135917
EUL_193
GCA_040398345.1ScaffoldJBBAUG000000000SAMN40136015
EUL_291
GCA_040396935.1ScaffoldJBBAXA000000000SAMN40136087
EUL_363
GCA_040397765.1ScaffoldJBBAVL000000000SAMN40136046
EUL_322
GCA_040397685.1ScaffoldJBBAVM000000000SAMN40136047
EUL_323
GCA_040397665.1ScaffoldJBBAVP000000000SAMN40136050
EUL_326
GCA_040397635.1ScaffoldJBBAVO000000000SAMN40136049
EUL_325
GCA_040397625.1ScaffoldJBBAVQ000000000SAMN40136051
EUL_327
GCA_040397585.1ScaffoldJBBAVS000000000SAMN40136053
EUL_329
GCA_040397595.1ScaffoldJBBAVR000000000SAMN40136052
EUL_328
GCA_040397565.1ScaffoldJBBAVU000000000SAMN40136055
EUL_331
GCA_040397545.1ScaffoldJBBAVV000000000SAMN40136056
EUL_332
GCA_040397525.1ScaffoldJBBAVT000000000SAMN40136054
EUL_330
GCA_040397725.1ScaffoldJBBAVN000000000SAMN40136048
EUL_324
GCA_040400945.1ScaffoldJBBAPG000000000SAMN40135885
EUL_161
GCA_040400935.1ScaffoldJBBAPH000000000SAMN40135886
EUL_162
GCA_040400815.1ScaffoldJBBAPN000000000SAMN40135892
EUL_168
GCA_040400775.1ScaffoldJBBAPP000000000SAMN40135894
EUL_170
GCA_040400535.1ScaffoldJBBAQC000000000SAMN40135907
EUL_183
GCA_040400365.1ScaffoldJBBAQJ000000000SAMN40135914
EUL_190
GCA_040400325.1ScaffoldJBBAQK000000000SAMN40135915
EUL_191
GCA_040400455.1ScaffoldJBBAQF000000000SAMN40135910
EUL_186
GCA_040400435.1ScaffoldJBBAQH000000000SAMN40135912
EUL_188
GCA_040400415.1ScaffoldJBBAQG000000000SAMN40135911
EUL_187
GCA_040400395.1ScaffoldJBBAQI000000000SAMN40135913
EUL_189
GCA_040400485.1ScaffoldJBBAQE000000000SAMN40135909
EUL_185
GCA_040403635.1ScaffoldJBBAKF000000000SAMN40135754
EUL_030
GCA_040399185.1ScaffoldJBBASQ000000000SAMN40135973
EUL_249
GCA_040399225.1ScaffoldJBBASN000000000SAMN40135970
EUL_246
GCA_040399285.1ScaffoldJBBASM000000000SAMN40135969
EUL_245
GCA_040399265.1ScaffoldJBBASO000000000SAMN40135971
EUL_247
GCA_040399325.1ScaffoldJBBASJ000000000SAMN40135966
EUL_242
GCA_040399545.1ScaffoldJBBARW000000000SAMN40135953
EUL_229
GCA_040400575.1ScaffoldJBBAPX000000000SAMN40135902
EUL_178
GCA_040400795.1ScaffoldJBBAPO000000000SAMN40135893
EUL_169
GCA_040400755.1ScaffoldJBBAPQ000000000SAMN40135895
EUL_171
GCA_040400735.1ScaffoldJBBAPS000000000SAMN40135897
EUL_173
GCA_040400715.1ScaffoldJBBAPT000000000SAMN40135898
EUL_174
GCA_040400695.1ScaffoldJBBAPU000000000SAMN40135899
EUL_175
GCA_040400675.1ScaffoldJBBAPR000000000SAMN40135896
EUL_172
GCA_040400655.1ScaffoldJBBAPV000000000SAMN40135900
EUL_176
GCA_040400635.1ScaffoldJBBAPY000000000SAMN40135903
EUL_179
GCA_040400595.1ScaffoldJBBAPW000000000SAMN40135901
EUL_177
GCA_040402555.1ScaffoldJBBAMK000000000SAMN40135811
EUL_087
GCA_040402535.1ScaffoldJBBAMJ000000000SAMN40135810
EUL_086
GCA_040402515.1ScaffoldJBBAML000000000SAMN40135812
EUL_088
GCA_040402495.1ScaffoldJBBAMO000000000SAMN40135815
EUL_091
GCA_040402455.1ScaffoldJBBAMN000000000SAMN40135814
EUL_090
GCA_040402475.1ScaffoldJBBAMM000000000SAMN40135813
EUL_089
GCA_040402435.1ScaffoldJBBAMP000000000SAMN40135816
EUL_092
GCA_040399605.1ScaffoldJBBARU000000000SAMN40135951
EUL_227
GCA_040397035.1ScaffoldJBBAWW000000000SAMN40136083
EUL_359
GCA_040396955.1ScaffoldJBBAWX000000000SAMN40136084
EUL_360
GCA_040398485.1ScaffoldJBBAUC000000000SAMN40136011
EUL_287
GCA_040400855.1ScaffoldJBBAPJ000000000SAMN40135888
EUL_164
GCA_040400915.1ScaffoldJBBAPI000000000SAMN40135887
EUL_163
GCA_040398685.1ScaffoldJBBATP000000000SAMN40135998
EUL_274
GCA_040398705.1ScaffoldJBBATO000000000SAMN40135997
EUL_273
GCA_040398645.1ScaffoldJBBATR000000000SAMN40136000
EUL_276
GCA_040398665.1ScaffoldJBBATQ000000000SAMN40135999
EUL_275
GCA_040397785.1ScaffoldJBBAVI000000000SAMN40136043
EUL_319
GCA_040401995.1ScaffoldJBBANM000000000SAMN40135839
EUL_115
GCA_040403745.1ScaffoldJBBAKB000000000SAMN40135750
EUL_026
GCA_040403435.1ScaffoldJBBAKQ000000000SAMN40135765
EUL_041
GCA_040398405.1ScaffoldJBBAUD000000000SAMN40136012
EUL_288
GCA_040398385.1ScaffoldJBBAUE000000000SAMN40136013
EUL_289
GCA_040403765.1ScaffoldJBBAJZ000000000SAMN40135748
EUL_024
GCA_040403595.1ScaffoldJBBAKI000000000SAMN40135757
EUL_033
GCA_040403675.1ScaffoldJBBAKJ000000000SAMN40135758
EUL_034
GCA_040403655.1ScaffoldJBBAKH000000000SAMN40135756
EUL_032
GCA_040403975.1ScaffoldJBBAJS000000000SAMN40135741
EUL_017
GCA_040403945.1ScaffoldJBBAJQ000000000SAMN40135739
EUL_015
GCA_040403925.1ScaffoldJBBAJV000000000SAMN40135744
EUL_020
GCA_040403885.1ScaffoldJBBAJX000000000SAMN40135746
EUL_022
GCA_040403905.1ScaffoldJBBAJT000000000SAMN40135742
EUL_018
GCA_040403865.1ScaffoldJBBAJW000000000SAMN40135745
EUL_021
GCA_040403845.1ScaffoldJBBAJU000000000SAMN40135743
EUL_019
GCA_040403825.1ScaffoldJBBAJY000000000SAMN40135747
EUL_023
GCA_040404025.1ScaffoldJBBAJR000000000SAMN40135740
EUL_016
GCA_040398225.1ScaffoldJBBAUN000000000SAMN40136022
EUL_298
GCA_040399005.1ScaffoldJBBATA000000000SAMN40135983
EUL_259
GCA_040398965.1ScaffoldJBBASZ000000000SAMN40135982
EUL_258
GCA_040398125.1ScaffoldJBBAUQ000000000SAMN40136025
EUL_301
GCA_040398165.1ScaffoldJBBAUP000000000SAMN40136024
EUL_300
GCA_040403555.1ScaffoldJBBAKN000000000SAMN40135762
EUL_038
GCA_040403575.1ScaffoldJBBAKK000000000SAMN40135759
EUL_035
GCA_040398505.1ScaffoldJBBATX000000000SAMN40136006
EUL_282
GCA_040398725.1ScaffoldJBBATN000000000SAMN40135996
EUL_272
GCA_040398745.1ScaffoldJBBATM000000000SAMN40135995
EUL_271
GCA_040400835.1ScaffoldJBBAPM000000000SAMN40135891
EUL_167
GCA_040399585.1ScaffoldJBBARY000000000SAMN40135955
EUL_231
GCA_040399555.1ScaffoldJBBARX000000000SAMN40135954
EUL_230
GCA_040397325.1ScaffoldJBBAWF000000000SAMN40136066
EUL_342
GCA_040399205.1ScaffoldJBBASP000000000SAMN40135972
EUL_248
GCA_040404225.1ScaffoldJBBAJD000000000SAMN40135726
EUL_002
SRA Data Details
ParameterValue
Data volume, Gbases659
Data volume, Tbytes0.26

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