sediment metagenome (ID 1013980) - BioProject

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Accession: PRJNA1013980 ID: 1013980

sediment metagenome

Characterization of a chloroform and dichloromethane-degrading microbial community

This project follows a chloroform-dechlorinating and dichloromethane-mineralizing mixed microbial lab enrichment culture and its dichloromethane-degrading subculture over time.

Accession	PRJNA1013980
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	sediment metagenome[Taxonomy ID: 749907] unclassified sequences; metagenomes; ecological metagenomes; sediment metagenome
Submission	Registration date: 23-Oct-2023 University of Toronto
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6
WGS master	4
Genomic DNA	2
SRA Experiments	81
Protein Sequences	6494
Other datasets
BioSample	85
Assembly	6

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Scaffold

Total

2
4
6

Assembly	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_040500375.1		1	SAMN39845672	SAD	Dehalobacter restrictus
GCA_040500365.1		1	SAMN39845673	DAD	Dehalobacter sp.
GCA_037975395.1	JBAWSR000000000		SAMN39297680	SC05UT_2023	sediment metagenome
GCA_037975375.1	JBAWSS000000000		SAMN39297681	DCME_2023	sediment metagenome
GCA_032941855.1	JAWDGO000000000		SAMN37316503	DCME_2021	sediment metagenome
GCA_032942435.1	JAWDGN000000000		SAMN37316502	SC05UT_2021	sediment metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	140
Data volume, Mbytes	45858

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BioProject Links for Nucleotide (Select 2710609444) (1)
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sediment metagenome
sediment metagenome
Characterization of a chloroform and dichloromethane-degrading microbial community

BioProject
Taxonomy Links for Nucleotide (Select 1833559535) (1)
Taxonomy
Sediment metagenome isolate ACT3CF_2021, whole genome shotgun sequencing project
Sediment metagenome isolate ACT3CF_2021, whole genome shotgun sequencing project
gi|2592917010|gb|JAVKYP000000000.1| P010000000

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