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Accession: PRJNA1020440 ID: 1020440

Drosophilidae

Genome sequencing and assembly of many species of Family Drosophilidae Genome sequencing and assembly

This work is a collaborative project aiming to broaden the scope of genomic resources for studying evolution in Family Drosophilidae. More...
AccessionPRJNA1020440
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsKim BY et al., "Single-fly assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life.", bioRxiv, 2023 Oct 2;
Grants
  • "A comparative population genomic approach for high-resolution inference of natural selection in fruit flies" (Grant ID F32 GM135998, National Institute of General Medical Sciences)
  • "Genomics of rapid adaptation in the lab and in the wild" (Grant ID R35 GM118165, National Institute of General Medical Sciences)
  • "Drivers and consequences of introgression in evolution" (Grant ID R35 GM148244, National Institute of General Medical Sciences)
  • "Investigator" (Grant ID HHMI_Eisen_M, Howard Hughes Medical Institute)
SubmissionRegistration date: 23-Sep-2023
Stanford University
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)183
SRA Experiments344
Publications
PubMed1
PMC1
Other datasets
BioSample183
Assembly183
Assembly details:
Assembly levelNumber of Assemblies
51
132
183
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_037040105.1ScaffoldJBANCV000000000SAMN37596579
Aalb_MT110
GCA_037043315.1ContigJBAMAV000000000SAMN37596569
Acom_TW22
GCA_035041805.1ContigJAWNKV000000000SAMN37596568
Amar_TW22
GCA_037043295.1ScaffoldJBAMAW000000000SAMN37596516
Amin_TW22
GCA_035041755.1ContigJAWNKX000000000SAMN37596573
CxInd_DO22-2
GCA_037043725.1ScaffoldJBAMAY000000000SAMN37596490
CxInd_DO22-1
GCA_037043745.1ScaffoldJBAMAX000000000SAMN37596463
Camo_TW21
GCA_035041775.1ContigJAWNKW000000000SAMN37596574
Ccau_DO
GCA_035046065.1ContigJAWNOJ000000000SAMN37596415
20000-2631.01
GCA_035078785.1ScaffoldJAWNPV000000000SAMN37596588
Ckir_MT79
GCA_037040085.1ScaffoldJBANCW000000000SAMN37596582
Ckot_MT6
GCA_037040065.1ScaffoldJBANCX000000000SAMN37596592
Deni_MT38
GCA_035078745.1ScaffoldJAWNPW000000000SAMN37596581
DIuss_MT91
GCA_037075225.1ScaffoldJBAMCN000000000SAMN37596585
Dlnd_MT57
GCA_035046005.1ContigJAWNOK000000000SAMN37596425
acutilabella_AK
GCA_035045985.1ContigJAWNOL000000000SAMN37596410
14012-0141.00
GCA_035045965.1ContigJAWNOM000000000SAMN37596441
15081-1251.22
GCA_035041765.1ContigJAWNKY000000000SAMN37596462
Dalg_TW21
GCA_035045945.1ContigJAWNON000000000SAMN37596442
15081-1261.02
GCA_035046425.1ContigJAWNNY000000000SAMN37596502
14024-0461.00
GCA_035041615.1ContigJAWNKZ000000000SAMN37596563
Danp_SHC-C171
GCA_035045905.1ContigJAWNOO000000000SAMN37596446
Dano_JD
GCA_035045925.1ContigJAWNOP000000000SAMN37596429
V251
GCA_035041605.1ContigJAWNLA000000000SAMN37596559
Dasc_SHC-C168
GCA_035045865.1ContigJAWNOQ000000000SAMN37596435
14045-0881.00
GCA_035041595.1ContigJAWNLB000000000SAMN37596551
Dbas_SHC-C021
GCA_035046375.1ScaffoldJAWNNZ000000000SAMN37596500
14023-0361.09
GCA_035046345.1ContigJAWNOA000000000SAMN37596503
DM11
GCA_035045885.1ContigJAWNOR000000000SAMN37596413
15010-0961.00
GCA_035046265.1ContigJAWNOB000000000SAMN37596507
KLE 127
GCA_035045845.1ContigJAWNOS000000000SAMN37596443
15081-1291.02
GCA_035041535.1ContigJAWNLC000000000SAMN37596528
Dcog_SHC-C074
GCA_035041545.1ContigJAWNLD000000000SAMN37596489
Dcol_TW22-3
GCA_035041375.1ContigJAWNLE000000000SAMN37596537
Dcnf_SHC-C065
GCA_035042505.1ContigJAWNLF000000000SAMN37596534
Dcrc_SHC-C082
GCA_035041335.1ContigJAWNLG000000000SAMN37596483
Dcru_DKP
GCA_035042485.1ContigJAWNLH000000000SAMN37596474
Dcyr_DKP
GCA_035042405.1ContigJAWNLI000000000SAMN37596542
Ddem_SHC-C151
GCA_037043665.1ScaffoldJBAMAZ000000000SAMN37596476
Ddif_DKP
GCA_035042365.1ContigJAWNLJ000000000SAMN37596546
Ddiv_SHC-C142
GCA_037075365.1ScaffoldJBAMCD000000000SAMN37596449
14042-0841.09
GCA_035042385.1ContigJAWNLK000000000SAMN37596481
Deng_DKP
GCA_035045825.1ContigJAWNOT000000000SAMN37596452
15085-1631.01
GCA_035045725.1ContigJAWNOU000000000SAMN37596421
Dezo_MK-OJ8
GCA_035045575.1ContigJAWNOV000000000SAMN37596439
D.falleni_G1#5
GCA_035042425.1ContigJAWNLL000000000SAMN37596494
Dfpi_TW22
GCA_035045625.1ContigJAWNOW000000000SAMN37596454
15111-1721.00
GCA_035045555.1ContigJAWNOX000000000SAMN37596447
15084-1571.04
GCA_035042345.1ContigJAWNLM000000000SAMN37596545
Dfug_SHC-C036
GCA_035045545.1ContigJAWNOY000000000SAMN37596411
15070-1231.03
GCA_035042305.1ContigJAWNLN000000000SAMN37596564
Dgla_SHC-C181
GCA_035045485.1ContigJAWNOZ000000000SAMN37596422
gunungcola_AK-MK
GCA_035045345.1ContigJAWNPA000000000SAMN37596456
15081-1301.08
GCA_037043685.1ScaffoldJBAMBA000000000SAMN37596480
Dhaw_DKP
GCA_037043705.1ScaffoldJBAMBB000000000SAMN37596464
Dhel_DO21
GCA_035042245.1ContigJAWNLO000000000SAMN37596511
Dhet_DKP
GCA_037043635.1ScaffoldJBAMBC000000000SAMN37596491
Dhis_DO
GCA_035042265.1ContigJAWNLP000000000SAMN37596531
Dimp_SHC-C096
GCA_035042225.1ContigJAWNLQ000000000SAMN37596538
Dicg_SHC-C104
GCA_035042205.1ContigJAWNLR000000000SAMN37596547
Dinf_SHC-C099
GCA_035042185.1ContigJAWNLS000000000SAMN37596548
Dkam_SHC-C100
GCA_037075305.1ScaffoldJBAMCE000000000SAMN37596434
Dkan_CRE
GCA_035042145.1ContigJAWNLT000000000SAMN37596560
Dkok_SHC-C184
GCA_035042165.1ContigJAWNLU000000000SAMN37596468
Dkun_DO21
GCA_035045355.1ContigJAWNPB000000000SAMN37596438
15010-0991.12
GCA_035045365.1ContigJAWNPC000000000SAMN37596445
15081-1395.01
GCA_035042125.1ContigJAWNLV000000000SAMN37596544
Dlon_SHC-C139
GCA_037075285.1ScaffoldJBAMCF000000000SAMN37596451
14022-0271.00
GCA_035042075.1ContigJAWNLW000000000SAMN37596471
Dmax_TW21
GCA_035042055.1ContigJAWNLX000000000SAMN37596567
Dmac_SHC-C051
GCA_035045305.1ContigJAWNPD000000000SAMN37596432
Dmct_TK
GCA_037075325.1ContigJBAMCG000000000SAMN37596436
15081-1397.00
GCA_037043625.1ScaffoldJBAMBD000000000SAMN37596475
Dmln_DKP
GCA_037075385.1ScaffoldJBAMCB000000000SAMN37596497
14021-0231.36
GCA_035042045.1ContigJAWNLY000000000SAMN37596561
Dmls_SHC-C174
GCA_035042065.1ContigJAWNLZ000000000SAMN37596562
Dmls_SHC-C177
GCA_035045175.1ContigJAWNPE000000000SAMN37596414
15082-1511.00
GCA_035045185.1ContigJAWNPF000000000SAMN37596417
15081-1331.00
GCA_035045145.1ContigJAWNPG000000000SAMN37596448
15081-1344.00
GCA_035047645.1ContigJAWNPH000000000SAMN37596423
merina_AK-JD
GCA_035047625.1ContigJAWNPI000000000SAMN37596444
15081-1502.00
GCA_037075245.1ScaffoldJBAMCH000000000SAMN37596428
mimetica_AK
GCA_037043585.1ContigJBAMBE000000000SAMN37596549
Dmic_SHC-C044
GCA_035044445.1ContigJAWNMA000000000SAMN37596492
Dmir_TW22
GCA_035047585.1ContigJAWNPJ000000000SAMN37596424
monieri_AK-JD
GCA_035044405.1ContigJAWNMB000000000SAMN37596575
Dmon_TW-CO22-7
GCA_035044425.1ContigJAWNMC000000000SAMN37596495
Dmon_MK-O21
GCA_035047565.1ContigJAWNPK000000000SAMN37596412
15081-1331.00
GCA_037043605.1ContigJBAMBF000000000SAMN37596543
Dmlt_SHC-C078
GCA_037043555.1ScaffoldJBAMBG000000000SAMN37596510
Dnpe_DKP
GCA_035044365.1ContigJAWNMD000000000SAMN37596488
Dnet_TW22
GCA_035044385.1ContigJAWNME000000000SAMN37596539
Dneu_SHC-C107
GCA_037075265.1ScaffoldJBAMCI000000000SAMN37596453
15081-1381.06
GCA_035044305.1ContigJAWNMF000000000SAMN37596532
Dnit_SHC-C060
GCA_035046325.1ContigJAWNOC000000000SAMN37596504
DS 71
GCA_035044245.1ContigJAWNMG000000000SAMN37596535
Dnrfun_SHC-C102
GCA_035044325.1ContigJAWNMH000000000SAMN37596533
Dnrmed2_SHC-C101
GCA_035044225.1ContigJAWNMI000000000SAMN37596486
Dnrmed3_DKP
GCA_035044165.1ContigJAWNMJ000000000SAMN37596557
Dnrprs1_SHC-C186
GCA_035044105.1ContigJAWNMK000000000SAMN37596558
Dnrprs5_SHC-C167
GCA_035044065.1ContigJAWNMM000000000SAMN37596478
Doch_DKP
GCA_035044125.1ContigJAWNML000000000SAMN37596550
Doch_SHC-C070
GCA_040805635.1ScaffoldJBEQPO000000000SAMN37596437
nou 88
GCA_035044025.1ContigJAWNMN000000000SAMN37596536
Dpcn_SHC-C089
GCA_035043915.1ContigJAWNMO000000000SAMN37596472
Dpam_TW21
GCA_035047545.1ContigJAWNPL000000000SAMN37596416
15082-1541.00
GCA_035047505.1ContigJAWNPM000000000SAMN37596455
15181-2221.03
GCA_035043875.1ContigJAWNMP000000000SAMN37596496
Dppn_DKP
GCA_035046225.1ContigJAWNOD000000000SAMN37596498
15081-1398.11
GCA_035047485.1ContigJAWNPN000000000SAMN37596420
15081-1401.00
GCA_035043855.1ContigJAWNMQ000000000SAMN37596540
Dpes_SHC-C008
GCA_037043515.1ScaffoldJBAMBH000000000SAMN37596465
Dpha_DO21
GCA_035043845.1ContigJAWNMR000000000SAMN37596565
Dpic_SHC-C172
GCA_035043785.1ContigJAWNMS000000000SAMN37596479
Dpla_DKP
GCA_037075205.1ScaffoldJBAMCJ000000000SAMN37596450
14022-0291.00
GCA_035046095.1ContigJAWNOE000000000SAMN37596505
PH 171
GCA_037075185.1ScaffoldJBAMCK000000000SAMN37596419
15040-1191.00
GCA_035043795.1ContigJAWNMT000000000SAMN37596482
Dpul_DKP
GCA_037043535.1ScaffoldJBAMBI000000000SAMN37596467
Dput_TW21
GCA_035043665.1ContigJAWNMU000000000SAMN37596485
Dqus_DKP
GCA_035047525.1ContigJAWNPO000000000SAMN37596457
Dqui_CRE
GCA_037043495.1ScaffoldJBAMBJ000000000SAMN37596493
Drec_TW22
GCA_035043635.1ContigJAWNMV000000000SAMN37596514
Drll_TW22
GCA_037075345.1ScaffoldJBAMCC000000000SAMN37596499
15084-1611.06
GCA_035043565.1ContigJAWNMW000000000SAMN37596470
Drob_TW21
GCA_035046165.1ContigJAWNOF000000000SAMN37596506
PH 161
GCA_035043575.1ContigJAWNMX000000000SAMN37596529
Dscl_SHC-C011
GCA_035046125.1ScaffoldJAWNOG000000000SAMN37596508
PLE 108
GCA_035043505.1ContigJAWNMY000000000SAMN37596566
Dset_SHC-C195
GCA_035047445.1ContigJAWNPP000000000SAMN37596426
15111-1741.00
GCA_035043445.1ContigJAWNMZ000000000SAMN37596484
Dsil_DKP
GCA_035043295.1ContigJAWNNA000000000SAMN37596541
Dsrd_SHC-C027
GCA_035047465.1ContigJAWNPQ000000000SAMN37596458
15020-1121.01
GCA_035047405.1ContigJAWNPR000000000SAMN37596440
15081-1451.00
GCA_037043435.1ScaffoldJBAMBK000000000SAMN37596515
Dsuo_TW22
GCA_037043405.1ScaffoldJBAMBL000000000SAMN37596513
Dsqu_TW22
GCA_035043285.1ContigJAWNNB000000000SAMN37596459
Dsus_DO21
GCA_035043275.1ContigJAWNNC000000000SAMN37596469
Dtan_DKP
GCA_035043265.1ContigJAWNND000000000SAMN37596461
Dtes_DO21
GCA_035043205.1ContigJAWNNE000000000SAMN37596530
Dtch_SHC-C086
GCA_035047385.1ContigJAWNPS000000000SAMN37596431
A5-2b1 F7-b1b
GCA_035047365.1ContigJAWNPT000000000SAMN37596427
MTK
GCA_035047325.1ContigJAWNPU000000000SAMN37596430
vallismaia_AK-JD
GCA_035043025.1ContigJAWNNF000000000SAMN37596477
Dvil_DKP
GCA_035046025.1ContigJAWNOH000000000SAMN37596501
14021-0261.01
GCA_035043035.1ContigJAWNNG000000000SAMN37596473
Dyoo_DKP
GCA_035043045.1ContigJAWNNH000000000SAMN37596525
Halb_MT24
GCA_037075125.1ScaffoldJBAMCO000000000SAMN37596583
Hcap_MT172
GCA_035043065.1ContigJAWNNI000000000SAMN37596460
Hcon_DO21
GCA_037043425.1ScaffoldJBAMBM000000000SAMN37596466
Hdun_TW21
GCA_037075165.1ScaffoldJBAMCL000000000SAMN37596433
Hhis_TK
GCA_035078685.1ScaffoldJAWNPX000000000SAMN37596580
Huok_MT27
GCA_035045065.1ContigJAWNNK000000000SAMN37596487
Htri_DO
GCA_035045125.1ContigJAWNNJ000000000SAMN37596522
Hgut_MT124
GCA_035044805.1ContigJAWNNP000000000SAMN37596571
Lmac_DO
GCA_035044765.1ContigJAWNNQ000000000SAMN37596570
Lmon_TW-CO22-6
GCA_035045005.1ContigJAWNNL000000000SAMN37596523
Laer_MT83
GCA_037043415.1ScaffoldJBAMBN000000000SAMN37596576
Laer_TM23
GCA_037075105.1ScaffoldJBAMCP000000000SAMN37596589
Lsab_MT150
GCA_035044965.1ContigJAWNNM000000000SAMN37596572
Land_DO
GCA_035044905.1ContigJAWNNN000000000SAMN37596518
UCKTSapporo052019LC
GCA_035044985.1ContigJAWNNO000000000SAMN37596512
Lfen_DO
GCA_037044535.1ScaffoldJBAMBO000000000SAMN37596517
UCKTSapporo052019LM
GCA_037075075.1ScaffoldJBAMCQ000000000SAMN37596586
Mcri_MT41
GCA_037075045.1ScaffoldJBAMCR000000000SAMN37596587
Mpar_MT130
GCA_040802665.1ScaffoldJBEQPP000000000SAMN37596591
Mpoe_MT45
GCA_037044515.1ScaffoldJBAMBP000000000SAMN37596524
Pmag_MT84
GCA_037040045.1ScaffoldJBANCY000000000SAMN37596577
Pfla_MT158
GCA_037075145.1ScaffoldJBAMCM000000000SAMN37596418
11030-0061.01
GCA_035078625.1ScaffoldJAWNPY000000000SAMN37596584
Ssca_MT71
GCA_035044725.1ContigJAWNNR000000000SAMN37596555
Scal_SHC-C164
GCA_035044605.1ContigJAWNNS000000000SAMN37596552
Scyr_SHC-C002
GCA_035044645.1ContigJAWNNT000000000SAMN37596556
Spar_SHC-C083
GCA_035044585.1ContigJAWNNU000000000SAMN37596519
Spol_TM
GCA_035044485.1ContigJAWNNV000000000SAMN37596554
Sred_SHC-C122
GCA_035044465.1ContigJAWNNW000000000SAMN37596553
Stum_SHC-C153
GCA_037040025.1ScaffoldJBANCZ000000000SAMN37596578
Sjav_MT119
GCA_037044495.1ScaffoldJBAMBQ000000000SAMN37596527
Snig_MT107
GCA_035046045.1ContigJAWNOI000000000SAMN37596509
PL 11
GCA_035044505.1ContigJAWNNX000000000SAMN37596590
Zlin_MT215
GCA_037044475.1ScaffoldJBAMBR000000000SAMN37596521
Zobs_MT162
GCA_037040005.1ScaffoldJBANDA000000000SAMN37596520
Zfla_MT450
GCA_037044455.1ScaffoldJBAMBS000000000SAMN37596526
Zqui_MT42
SRA Data Details
ParameterValue
Data volume, Gbases3,191
Data volume, Tbytes1.95
Related Project Category: RefseqGenbank
PRJNA1101958 : Drosophila montana RefSeq BioProject

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