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Accession: PRJNA1036598 ID: 1036598

Detection of rare carbapenemases in Enterobacterales - comparison of two colorimetric and two CIM-based carbapenemase assays

Isolate cohort of diverse carbapenemase-producing Enterobacterales and controls
AccessionPRJNA1036598
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications
  • Published online: Schaffarczyk L et al., "Detection of rare carbapenemases in Enterobacterales—comparison of two colorimetric and three CIM-based carbapenemase assays", Microbiology Spectrum, 2024;12(2)
SubmissionRegistration date: 7-Nov-2023
Universtity Hospital Cologne
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)167
Other datasets
BioSample171
Assembly167
Assembly details:
Assembly levelNumber of Assemblies
154
13
167
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_033900965.1ContigJAXADN000000000SAMN38143696
CIM-Carb-052
GCA_033901435.1ScaffoldJAXAEL000000000SAMN38143671
CIM-Carb-027
GCA_033901315.1ScaffoldJAXAEE000000000SAMN38143679
CIM-Carb-035
GCA_033901295.1ScaffoldJAXAED000000000SAMN38143680
CIM-Carb-036
GCA_033901635.1ScaffoldJAXAEV000000000SAMN38143661
CIM-Carb-016
GCA_033901905.1ScaffoldJAXAFH000000000SAMN38143649
CIM-Carb-004
GCA_033901865.1ScaffoldJAXAFG000000000SAMN38143650
CIM-Carb-005
GCA_033900795.1ScaffoldJAXADF000000000SAMN38143704
CIM-Carb-060
GCA_033900345.1ContigJAXACJ000000000SAMN38143727
CIM-Carb-094
GCA_033900165.1ScaffoldJAXABZ000000000SAMN38143738
CIM-Carb-117
GCA_033900065.1ScaffoldJAXABT000000000SAMN38143744
CIM-Carb-123
GCA_033899995.1ScaffoldJAXABS000000000SAMN38143745
CIM-Carb-124
GCA_033899925.1ScaffoldJAXABN000000000SAMN38143750
CIM-Carb-129
GCA_033899755.1ScaffoldJAXABF000000000SAMN38143758
CIM-Carb-137
GCA_033899725.1ScaffoldJAXABD000000000SAMN38143760
CIM-Cont-001
GCA_033899705.1ScaffoldJAXABC000000000SAMN38143761
CIM-Cont-002
GCA_033899665.1ScaffoldJAXABB000000000SAMN38143762
CIM-Cont-003
GCA_033899645.1ScaffoldJAXAAZ000000000SAMN38143764
CIM-Cont-005
GCA_033899625.1ScaffoldJAXAAY000000000SAMN38143765
CIM-Cont-006
GCA_033899685.1ScaffoldJAXABA000000000SAMN38143763
CIM-Cont-004
GCA_033899845.1ScaffoldJAXABJ000000000SAMN38143754
CIM-Carb-133
GCA_033899955.1ScaffoldJAXABO000000000SAMN38143749
CIM-Carb-128
GCA_033901945.1ScaffoldJAXAFI000000000SAMN38143647
CIM-Carb-001
GCA_033901785.1ScaffoldJAXAFB000000000SAMN38143655
CIM-Carb-010
GCA_033901765.1ScaffoldJAXAFC000000000SAMN38143654
CIM-Carb-009
GCA_033901805.1ScaffoldJAXAFD000000000SAMN38143653
CIM-Carb-008
GCA_033901655.1ScaffoldJAXAEW000000000SAMN38143660
CIM-Carb-015
GCA_033901825.1ScaffoldJAXAFE000000000SAMN38143652
CIM-Carb-007
GCA_033899535.1ScaffoldJAXAAV000000000SAMN38143768
CIM-Cont-009
GCA_033899385.1ScaffoldJAXAAK000000000SAMN38143779
CIM-Cont-020
GCA_033899325.1ScaffoldJAXAAM000000000SAMN38143777
CIM-Cont-018
GCA_033899985.1ScaffoldJAXABR000000000SAMN38143746
CIM-Carb-125
GCA_033899905.1ScaffoldJAXABM000000000SAMN38143751
CIM-Carb-130
GCA_033899745.1ScaffoldJAXABE000000000SAMN38143759
CIM-Carb-138
GCA_033899595.1ScaffoldJAXAAX000000000SAMN38143766
CIM-Cont-007
GCA_033899565.1ScaffoldJAXAAW000000000SAMN38143767
CIM-Cont-008
GCA_033899575.1ScaffoldJAXAAT000000000SAMN38143770
CIM-Cont-011
GCA_033899525.1ScaffoldJAXAAU000000000SAMN38143769
CIM-Cont-010
GCA_033899485.1ScaffoldJAXAAQ000000000SAMN38143773
CIM-Cont-014
GCA_033899465.1ScaffoldJAXAAS000000000SAMN38143771
CIM-Cont-012
GCA_033899435.1ScaffoldJAXAAP000000000SAMN38143774
CIM-Cont-015
GCA_033899305.1ScaffoldJAXAAI000000000SAMN38143781
CIM-Cont-022
GCA_033899255.1ScaffoldJAXAAH000000000SAMN38143782
CIM-Cont-023
GCA_033900875.1ScaffoldJAXADJ000000000SAMN38143700
CIM-Carb-056
GCA_033900945.1ScaffoldJAXADM000000000SAMN38143697
CIM-Carb-053
GCA_033901105.1ScaffoldJAXADS000000000SAMN38143691
CIM-Carb-047
GCA_033900105.1ScaffoldJAXABX000000000SAMN38143740
CIM-Carb-119
GCA_033900185.1ScaffoldJAXABY000000000SAMN38143739
CIM-Carb-118
GCA_033901845.1ScaffoldJAXAFF000000000SAMN38143651
CIM-Carb-006
GCA_033901415.1ScaffoldJAXAEK000000000SAMN38143672
CIM-Carb-028
GCA_033901745.1ScaffoldJAXAFA000000000SAMN38143656
CIM-Carb-011
GCA_033899425.1ScaffoldJAXAAO000000000SAMN38143775
CIM-Cont-016
GCA_033899345.1ScaffoldJAXAAJ000000000SAMN38143780
CIM-Cont-021
GCA_033899335.1ScaffoldJAXAAL000000000SAMN38143778
CIM-Cont-019
GCA_033901705.1ScaffoldJAXAEY000000000SAMN38143658
CIM-Carb-013
GCA_033901685.1ScaffoldJAXAEX000000000SAMN38143659
CIM-Carb-014
GCA_033899505.1ScaffoldJAXAAR000000000SAMN38143772
CIM-Cont-013
GCA_033899395.1ScaffoldJAXAAN000000000SAMN38143776
CIM-Cont-017
GCA_033901155.1ScaffoldJAXADY000000000SAMN38143685
CIM-Carb-041
GCA_033901515.1ScaffoldJAXAEQ000000000SAMN38143666
CIM-Carb-022
GCA_033900925.1ScaffoldJAXADL000000000SAMN38143698
CIM-Carb-054
GCA_033900905.1ScaffoldJAXADK000000000SAMN38143699
CIM-Carb-055
GCA_033901025.1ScaffoldJAXADQ000000000SAMN38143693
CIM-Carb-049
GCA_033901005.1ScaffoldJAXADP000000000SAMN38143694
CIM-Carb-050
GCA_033900975.1ScaffoldJAXADO000000000SAMN38143695
CIM-Carb-051
GCA_033900785.1ScaffoldJAXADE000000000SAMN38143705
CIM-Carb-061
GCA_033900745.1ScaffoldJAXADC000000000SAMN38143708
CIM-Carb-065
GCA_033900735.1ContigJAXADB000000000SAMN38143709
CIM-Carb-066
GCA_033900615.1ScaffoldJAXACW000000000SAMN38143714
CIM-Carb-081
GCA_033900625.1ScaffoldJAXACX000000000SAMN38143713
CIM-Carb-071
GCA_033900705.1ScaffoldJAXADA000000000SAMN38143710
CIM-Carb-067
GCA_033900115.1ScaffoldJAXABW000000000SAMN38143741
CIM-Carb-120
GCA_033900325.1ContigJAXACG000000000SAMN38143731
CIM-Carb-098
GCA_033900305.1ScaffoldJAXACH000000000SAMN38143730
CIM-Carb-097
GCA_033900365.1ContigJAXACI000000000SAMN38143729
CIM-Carb-096
GCA_033900485.1ScaffoldJAXACP000000000SAMN38143721
CIM-Carb-088
GCA_033900545.1ScaffoldJAXACQ000000000SAMN38143720
CIM-Carb-087
GCA_033900555.1ContigJAXACT000000000SAMN38143717
CIM-Carb-084
GCA_033900515.1ScaffoldJAXACS000000000SAMN38143718
CIM-Carb-085
GCA_033900505.1ScaffoldJAXACR000000000SAMN38143719
CIM-Carb-086
GCA_033899235.1ScaffoldJAXAAF000000000SAMN38143784
CIM-Cont-025
GCA_033899225.1ScaffoldJAXAAG000000000SAMN38143783
CIM-Cont-024
GCA_033899205.1ScaffoldJAXAAD000000000SAMN38143786
CIM-Cont-027
GCA_033899185.1ScaffoldJAXAAC000000000SAMN38143787
CIM-Cont-028
GCA_033899125.1ScaffoldJAWZZY000000000SAMN38143791
CIM-Cont-032
GCA_033899145.1ScaffoldJAWZZZ000000000SAMN38143790
CIM-Cont-031
GCA_033899135.1ScaffoldJAXAAB000000000SAMN38143788
CIM-Cont-029
GCA_033899105.1ScaffoldJAXAAA000000000SAMN38143789
CIM-Cont-030
GCA_033899285.1ScaffoldJAXAAE000000000SAMN38143785
CIM-Cont-026
GCA_033899065.1ScaffoldJAWZZW000000000SAMN38143793
CIM-Cont-034
GCA_033899045.1ScaffoldJAWZZV000000000SAMN38143794
CIM-Cont-035
GCA_033899085.1ScaffoldJAWZZX000000000SAMN38143792
CIM-Cont-033
GCA_033899005.1ScaffoldJAWZZT000000000SAMN38143796
CIM-Cont-037
GCA_033899025.1ScaffoldJAWZZU000000000SAMN38143795
CIM-Cont-036
GCA_033898985.1ScaffoldJAWZZS000000000SAMN38143797
CIM-Cont-038
GCA_033900255.1ContigJAXACF000000000SAMN38143732
CIM-Carb-099
GCA_033901235.1ScaffoldJAXAEC000000000SAMN38143681
CIM-Carb-037
GCA_033898965.1ScaffoldJAWZZR000000000SAMN38143798
CIM-Cont-039
GCA_033899945.1ScaffoldJAXABQ000000000SAMN38143747
CIM-Carb-126
GCA_033899885.1ScaffoldJAXABL000000000SAMN38143752
CIM-Carb-131
GCA_033899855.1ScaffoldJAXABK000000000SAMN38143753
CIM-Carb-132
GCA_033900005.1ScaffoldJAXABP000000000SAMN38143748
CIM-Carb-127
GCA_033899825.1ScaffoldJAXABI000000000SAMN38143755
CIM-Carb-134
GCA_033899795.1ScaffoldJAXABH000000000SAMN38143756
CIM-Carb-135
GCA_033898945.1ScaffoldJAWZZQ000000000SAMN38143799
CIM-Cont-040
GCA_033898925.1ScaffoldJAWZZP000000000SAMN38143800
CIM-Cont-041
GCA_033898905.1ScaffoldJAWZZO000000000SAMN38143801
CIM-Cont-042
GCA_033898885.1ScaffoldJAWZZK000000000SAMN38143805
CIM-Cont-046
GCA_033898865.1ScaffoldJAWZZM000000000SAMN38143803
CIM-Cont-044
GCA_033898845.1ScaffoldJAWZZN000000000SAMN38143802
CIM-Cont-043
GCA_033898825.1ScaffoldJAWZZL000000000SAMN38143804
CIM-Cont-045
GCA_033898805.1ScaffoldJAWZZJ000000000SAMN38143806
CIM-Cont-047
GCA_033898785.1ScaffoldJAWZZH000000000SAMN38143808
CIM-Cont-049
GCA_033898765.1ScaffoldJAWZZI000000000SAMN38143807
CIM-Cont-048
GCA_033898745.1ScaffoldJAWZZG000000000SAMN38143809
CIM-Cont-050
GCA_033898725.1ScaffoldJAWZZE000000000SAMN38143811
CIM-Cont-052
GCA_033898625.1ScaffoldJAWZZC000000000SAMN38143813
CIM-Cont-054
GCA_033898605.1ScaffoldJAWZZB000000000SAMN38143814
CIM-Cont-055
GCA_033898685.1ScaffoldJAWZZD000000000SAMN38143812
CIM-Cont-053
GCA_033901215.1ScaffoldJAXADZ000000000SAMN38143684
CIM-Carb-040
GCA_033901475.1ScaffoldJAXAEN000000000SAMN38143669
CIM-Carb-025
GCA_033901175.1ScaffoldJAXADX000000000SAMN38143686
CIM-Carb-042
GCA_033901035.1ContigJAXADR000000000SAMN38143692
CIM-Carb-048
GCA_033901065.1ContigJAXADT000000000SAMN38143690
CIM-Carb-046
GCA_033900605.1ScaffoldJAXACV000000000SAMN38143715
CIM-Carb-082
GCA_033900725.1ScaffoldJAXADD000000000SAMN38143706
CIM-Carb-062
GCA_033900865.1ScaffoldJAXADI000000000SAMN38143701
CIM-Carb-057
GCA_033900835.1ScaffoldJAXADH000000000SAMN38143702
CIM-Carb-058
GCA_033900825.1ScaffoldJAXADG000000000SAMN38143703
CIM-Carb-059
GCA_033900245.1ScaffoldJAXACD000000000SAMN38143734
CIM-Carb-101
GCA_033900225.1ScaffoldJAXACC000000000SAMN38143735
CIM-Carb-102
GCA_033900285.1ScaffoldJAXACE000000000SAMN38143733
CIM-Carb-100
GCA_033900145.1ContigJAXACA000000000SAMN38143737
CIM-Carb-105
GCA_033900085.1ScaffoldJAXABV000000000SAMN38143742
CIM-Carb-121
GCA_033900045.1ScaffoldJAXABU000000000SAMN38143743
CIM-Carb-122
GCA_033900465.1ScaffoldJAXACN000000000SAMN38143723
CIM-Carb-090
GCA_033900445.1ScaffoldJAXACM000000000SAMN38143724
CIM-Carb-091
GCA_033900425.1ScaffoldJAXACO000000000SAMN38143722
CIM-Carb-089
GCA_033900405.1ScaffoldJAXACL000000000SAMN38143725
CIM-Carb-092
GCA_033900385.1ScaffoldJAXACK000000000SAMN38143726
CIM-Carb-093
GCA_033900585.1ScaffoldJAXACU000000000SAMN38143716
CIM-Carb-083
GCA_033901145.1ScaffoldJAXADW000000000SAMN38143687
CIM-Carb-043
GCA_033901725.1ScaffoldJAXAEZ000000000SAMN38143657
CIM-Carb-012
GCA_033901535.1ScaffoldJAXAEP000000000SAMN38143667
CIM-Carb-023
GCA_033901595.1ScaffoldJAXAEU000000000SAMN38143662
CIM-Carb-017
GCA_033901395.1ScaffoldJAXAEH000000000SAMN38143675
CIM-Carb-031
GCA_033901375.1ScaffoldJAXAEI000000000SAMN38143674
CIM-Carb-030
GCA_033901355.1ScaffoldJAXAEJ000000000SAMN38143673
CIM-Carb-029
GCA_033901275.1ContigJAXAEF000000000SAMN38143678
CIM-Carb-034
GCA_033901255.1ScaffoldJAXAEB000000000SAMN38143682
CIM-Carb-038
GCA_033898705.1ScaffoldJAWZZF000000000SAMN38143810
CIM-Cont-051
GCA_033901195.1ScaffoldJAXAEA000000000SAMN38143683
CIM-Carb-039
GCA_033900665.1ContigJAXACZ000000000SAMN38143711
CIM-Carb-068
GCA_033900685.1ScaffoldJAXACY000000000SAMN38143712
CIM-Carb-070
GCA_033901115.1ScaffoldJAXADV000000000SAMN38143688
CIM-Carb-044
GCA_033901615.1ScaffoldJAXAET000000000SAMN38143663
CIM-Carb-019
GCA_033901075.1ScaffoldJAXADU000000000SAMN38143689
CIM-Carb-045
GCA_033901575.1ScaffoldJAXAES000000000SAMN38143664
CIM-Carb-020
GCA_033901555.1ScaffoldJAXAER000000000SAMN38143665
CIM-Carb-021
GCA_033901495.1ScaffoldJAXAEO000000000SAMN38143668
CIM-Carb-024
GCA_033901335.1ScaffoldJAXAEG000000000SAMN38143676
CIM-Carb-032
GCA_033900205.1ContigJAXACB000000000SAMN38143736
CIM-Carb-104
GCA_033901455.1ScaffoldJAXAEM000000000SAMN38143670
CIM-Carb-026
GCA_033898545.1ScaffoldJAWZYY000000000SAMN38143817
CIM-Cont-066
GCA_033898665.1ScaffoldJAWZZA000000000SAMN38143815
CIM-Cont-064
GCA_033898645.1ScaffoldJAWZYZ000000000SAMN38143816
CIM-Cont-065
GCA_033899785.1ScaffoldJAXABG000000000SAMN38143757
CIM-Carb-136

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