Lactiplantibacillus (ID 674638) - BioProject

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Accession: PRJNA674638 ID: 674638

Lactiplantibacillus

Cucumber fermentation organisms

A collection of sequences from isolates derived from cucumber fermentation.

Accession	PRJNA674638
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Page CA et al., "Annotated whole-genome sequences of fermentative and spoilage associated Bacilli and proteobacteria autochthonous to commercial cucumber fermentation.", Microbiol Resour Announc, 2024 Mar 12;13(3):e0092623 Page CA et al., "Genome Sequences for Levilactobacillus brevis Autochthonous to Commercial Cucumber Fermentations.", Microbiol Resour Announc, 2022 May 19;11(5):e0002922
Submission	Registration date: 23-Jun-2021 USDA-ARS - USDA Agricultural Research Service
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	148
WGS master	97
Genomic DNA	51
SRA Experiments	125
Protein Sequences	78904
Publications
PubMed	2
PMC	2
Other datasets
BioSample	127
Assembly	118

Assembly details:

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Assembly level

Number of Assemblies

12
9
12
85
118

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_032190615.1	JAVLAT000000000		SAMN37196901	1.2.1	Brucella pseudogrignonensis
GCA_032190555.1	JAVKYT000000000		SAMN37184526	7.2.6	Companilactobacillus alimentarius
GCA_032198945.1		1	SAMN37199274	3.2.17	Enterobacter cancerogenus
GCA_032190835.1	JAVLAJ000000000		SAMN37199266	3.2.13	Enterobacter cancerogenus
GCA_032190795.1	JAVLAI000000000		SAMN37199265	3.2.8	Enterobacter hormaechei
GCA_032369155.1		1	SAMN37196890	1.2.3	Enterobacter hormaechei
GCA_025740255.1	JANIER000000000		SAMN29939814	7.8.18	Enterobacter wuhouensis
GCA_032199685.1		1	SAMN37199273	3.8.4	Hafnia alvei
GCA_032173255.1		1	SAMN37196903	1.8.5	Kluyvera cryocrescens
GCA_041147075.1	JBFQYK000000000		SAMN42651620	LA1049	Lactiplantibacillus paraplantarum
GCA_018993965.2	JAHLEN000000000		SAMN19608004	LA0445	Lactiplantibacillus pentosus
GCA_032190735.1	JAVLAN000000000		SAMN37196895	1.8.18	Lactiplantibacillus pentosus
GCA_032190695.1	JAVLAO000000000		SAMN37196896	1.8.9	Lactiplantibacillus pentosus
GCA_032190675.1	JAVLAQ000000000		SAMN37196898	7.8.46	Lactiplantibacillus pentosus
GCA_032190655.1	JAVLAP000000000		SAMN37196897	14.8.42	Lactiplantibacillus pentosus
GCA_032190575.1	JAVLAU000000000		SAMN37196904	7.2.15	Lactiplantibacillus pentosus
GCA_032195525.1		4	SAMN37362701	7.8.2	Lactiplantibacillus pentosus
GCA_021384425.1	JAJHUS000000000		SAMN22818097	1.2.48	Lactiplantibacillus pentosus
GCA_018993275.1	JAGYGV000000000		SAMN18938210	7.8.11	Lactiplantibacillus pentosus
GCA_018993665.1	JAGXBW000000000		SAMN18987058	7.2.20	Lactiplantibacillus pentosus
GCA_018993635.1	JAGXBT000000000		SAMN18987114	1.8.18	Lactiplantibacillus pentosus
GCA_018993625.1	JAGXBQ000000000		SAMN18985924	14.2.16	Lactiplantibacillus pentosus
GCA_018993525.1	JAGXBO000000000		SAMN18982119	14.8.42	Lactiplantibacillus pentosus
GCA_018993485.1	JAGWDT000000000		SAMN18977487	7.2.23	Lactiplantibacillus pentosus
GCA_018993495.1	JAGYHA000000000		SAMN18942672	3.2.37	Lactiplantibacillus pentosus
GCA_018993445.1	JAGWDU000000000		SAMN18977471	7.2.15	Lactiplantibacillus pentosus
GCA_018993345.1	JAGYGZ000000000		SAMN18942671	3.8.24	Lactiplantibacillus pentosus
GCA_018991565.1	JAGXBU000000000		SAMN18987094	3.8.45	Lactiplantibacillus pentosus
GCA_018991535.1	JAGXBV000000000		SAMN18987059	7.8.2	Lactiplantibacillus pentosus
GCA_018991465.1	JAGXBR000000000		SAMN18985902	7.8.46	Lactiplantibacillus pentosus
GCA_018991425.1	JAGXBP000000000		SAMN18985997	14.2.3	Lactiplantibacillus pentosus
GCA_018991375.1	JAGWDS000000000		SAMN18977514	7.2.11	Lactiplantibacillus pentosus
GCA_018991365.1	JAGWDV000000000		SAMN18977394	1.2.7	Lactiplantibacillus pentosus
GCA_018991355.1	JAGYGY000000000		SAMN18940221	1.8.6	Lactiplantibacillus pentosus
GCA_018991345.1	JAGYGX000000000		SAMN18939723	1.2.13	Lactiplantibacillus pentosus
GCA_018991285.1	JAGYGW000000000		SAMN18939715	1.2.11	Lactiplantibacillus pentosus
GCA_018993945.1	JAHLEP000000000		SAMN19608333	1.8.9	Lactiplantibacillus pentosus
GCA_018993725.1	JAGXBS000000000		SAMN18985901	3.2.36	Lactiplantibacillus pentosus
GCA_018993585.2	JAGYHB000000000		SAMN18942680	MU0445	Lactiplantibacillus pentosus
GCA_043593105.1	JAVGXB000000000		SAMN37146070	14.8.42	Lactiplantibacillus pentosus
GCA_032190715.1	JAVLAR000000000		SAMN37196899	7.8.4	Lactiplantibacillus plantarum
GCA_018991855.1	JAGXCA000000000		SAMN16675177	3.2.8	Lactiplantibacillus plantarum
GCA_018993325.1	JAGYGT000000000		SAMN18938100	T1R2B	Lactiplantibacillus plantarum
GCA_018993285.1	JAGYGR000000000		SAMN18937939	7.8.4	Lactiplantibacillus plantarum
GCA_018991195.2	JAGYGQ000000000		SAMN18935462	3.2.8	Lactiplantibacillus plantarum
GCA_041147375.1	JBFRXW000000000		SAMN42781994	7.2.2	Lactiplantibacillus plantarum
GCA_018991255.1	JAGYGU000000000		SAMN18938172	30.2.29	Lactiplantibacillus sp. 30.2.29
GCA_018991185.1	JAGYGS000000000		SAMN18938099	7.2.4	Lactiplantibacillus sp. 7.2.4
GCA_033879915.1		1	SAMN37326198	NCK401	Lactococcus lactis
GCA_032171455.1		1	SAMN37196902	LA0312	Lactococcus lactis
GCA_018991605.1	JAGXIX000000000		SAMN18993399	LA0312	Lactococcus lactis
GCA_018991645.2	JAGXCF000000000		SAMN18989267	1.8.12	Lactococcus lactis
GCA_032190815.1	JAVLAK000000000		SAMN37199275	3.8.43	Latilactobacillus curvatus
GCA_025770045.1	JANKZD000000000		SAMN30195404	7.8.8	Leclercia adecarboxylata
GCA_025770015.1	JANKZC000000000		SAMN30195403	7.8.20	Leclercia adecarboxylata
GCA_032196625.1		1	SAMN37383316	1.2.7	Leclercia pneumoniae
GCA_025728255.1	JANHLP000000000		SAMN29833711	1.2.7	Leclercia pneumoniae
GCA_041147115.1	JBFPKA000000000		SAMN42584301	90.8.10	Lentilactobacillus buchneri
GCA_041147105.1	JBFYGS000000000		SAMN42945196	LA1147	Lentilactobacillus buchneri
GCA_018991475.1	JAGYGO000000000		SAMN18988549	3.8.12	Leuconostoc citreum
GCA_018993745.1	JAGYGP000000000		SAMN18988370	1.2.22	Leuconostoc fallax
GCA_018993775.1	JAGXCE000000000		SAMN18988201	1.2.28	Leuconostoc lactis
GCA_033881405.1		2	SAMN37326200	FFL48	Leuconostoc mesenteroides
GCA_018991785.1	JAHLEO000000000		SAMN19608125	1.2.47	Leuconostoc mesenteroides
GCA_021384615.1	JAJHVT000000000		SAMN22818106	30.2.29	Levilactobacillus brevis
GCA_021384595.1	JAJHVU000000000		SAMN22818107	30.8.38	Levilactobacillus brevis
GCA_021384565.1	JAJHVR000000000		SAMN22818104	7.8.34	Levilactobacillus brevis
GCA_021384555.1	JAJHVQ000000000		SAMN22818103	7.8.33	Levilactobacillus brevis
GCA_021384515.1	JAJHVS000000000		SAMN22818105	7.8.43	Levilactobacillus brevis
GCA_021384505.1	JAJHVO000000000		SAMN22818101	7.2.49	Levilactobacillus brevis
GCA_021384495.1	JAJHVP000000000		SAMN22818102	7.2.13	Levilactobacillus brevis
GCA_021384445.1	JAJHVM000000000		SAMN22818099	7.2.40	Levilactobacillus brevis
GCA_021384395.1	JAJHOC000000000		SAMN22818098	7.2.12	Levilactobacillus brevis
GCA_021384415.1	JAJHNO000000000		SAMN22657236	3.8.25	Levilactobacillus brevis
GCA_021384405.1	JAJHVN000000000		SAMN22818100	7.2.41	Levilactobacillus brevis
GCA_018991675.1	JAGXIY000000000		SAMN18995136	3.2.41	Levilactobacillus brevis
GCA_018991505.1	JAGXCC000000000		SAMN18988756	14.2.10	Levilactobacillus brevis
GCA_018993685.1	JAGXCD000000000		SAMN18988741	14.2.24	Levilactobacillus brevis
GCA_032197885.1		1	SAMN37196894	90.8.26	Levilactobacillus namurensis
GCA_032190775.1	JAVLAL000000000		SAMN37196892	1.2.9	Levilactobacillus namurensis
GCA_032190755.1	JAVLAM000000000		SAMN37196893	3.8.38	Levilactobacillus namurensis
GCA_032190635.1	JAVLAS000000000		SAMN37196900	90.8.36	Levilactobacillus zymae
GCA_032173795.1		1	SAMN37362705	Lys24	Lysinibacillus capsici
GCA_033879655.1		1	SAMN37326197	Lm01	Lysinibacillus capsici
GCA_041153405.1	JBGGIA000000000		SAMN42574903	Lys16	Lysinibacillus capsici
GCA_041147255.1	JBFRXT000000000		SAMN42780540	Lys19	Lysinibacillus capsici
GCA_041147275.1	JBFRYD000000000		SAMN42780389	Lys21	Lysinibacillus capsici
GCA_041147295.1	JBFRXU000000000		SAMN42780542	Lys06	Lysinibacillus capsici
GCA_033880585.1		1	SAMN37326199	Ll15	Lysinibacillus louembei
GCA_032200625.1		1	SAMN37199268	1.2.4	Pantoea agglomerans
GCA_025769915.1	JANRHF000000000		SAMN30243853	3.2.1	Pantoea ananatis
GCA_025773805.1	JANQCL000000000		SAMN30214252	30.2.11	Pediococcus ethanolidurans
GCA_025770335.1	JANJPN000000000		SAMN30085977	14.2.45	Pediococcus ethanolidurans
GCA_025770405.1	JANQAM000000000		SAMN30149066	1.2.28	Pediococcus ethanolidurans
GCA_025770395.1	JANQAL000000000		SAMN30149057	3.8.1	Pediococcus ethanolidurans
GCA_025770355.1	JANJYK000000000		SAMN30149044	14.2.5	Pediococcus ethanolidurans
GCA_018993885.1	JAGXJE000000000		SAMN18995149	NC579	Pediococcus ethanolidurans
GCA_018991695.1	JAGXJC000000000		SAMN18995139	7.8.48	Pediococcus ethanolidurans
GCA_033882205.1		3	SAMN37326201	LA0061	Pediococcus pentosaceus
GCA_025770495.1	JANKYZ000000000		SAMN30150222	7.2.43	Pediococcus pentosaceus
GCA_025770455.1	JANKZA000000000		SAMN30150223	3.2.19	Pediococcus pentosaceus
GCA_025770465.1	JANKZB000000000		SAMN30150224	7.2.36	Pediococcus pentosaceus
GCA_041147305.1	JBFRXV000000000		SAMN42780773	7.2.5	Pediococcus pentosaceus
GCA_032164165.1		1	SAMN37199269	7.8.24	Pseudomonas inefficax
GCA_033879595.1		1	SAMN37326195	1.8.4	Pseudomonas putida
GCA_041153475.1		1	SAMN42780936	1.8.3	Serratia marcescens
GCA_032164355.1		1	SAMN37199272	3.2.4	Siccibacter colletis
GCA_032378615.1	JAVYIJ000000000		SAMN37383412	7.2.7	Stenotrophomonas indicatrix
GCA_032163505.1		2	SAMN37199267	30.8.10	Streptococcus parasanguinis
GCA_025770435.1	JANQAN000000000		SAMN30149852	7.8.34	Weissella cibaria
GCA_018991795.1	JAGXJD000000000		SAMN18995143	7.8.34	Weissella cibaria
GCA_018993825.1	JAGXIZ000000000		SAMN18995118	3.8.44	Weissella cibaria
GCA_041147175.1	JBFWFW000000000		SAMN42760461	7.8.34	Weissella cibaria
GCA_041147085.1	JBFSEU000000000		SAMN42820424	7.8.48	Weissella cibaria
GCA_018993865.1	JAGXJA000000000		SAMN18994828	1.2.50	Weissella hellenica
GCA_018991665.1	JAGXJB000000000		SAMN18995137	3.2.24	Weissella paramesenteroides
GCA_041147055.1	JBFSEV000000000		SAMN42821629	3.8.13	Weissella paramesenteroides
GCA_032164335.1		2	SAMN37199271	1.2.20	Winslowiella toletana

SRA Data Details

Parameter	Value
Data volume, Gbases	96
Data volume, Mbytes	39835

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Lactiplantibacillus

Cucumber fermentation organisms

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