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Links from Nucleotide

Accession: PRJNA980407 ID: 980407

De novo sequencing and analysis for CECT strains in GCM 10K project

The project aims to sequence and analyse several strain submitted by CECT. Assembly sequence was gained by de novo methods, subsequently regarding annotation information was produced by our genomic analysis pipeline. Further study will be carried out with these data.
AccessionPRJNA980407
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsWu L et al., "The Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project: providing services to taxonomists for standard genome sequencing and annotation.", Int J Syst Evol Microbiol, 2019 Apr;69(4):895-898
SubmissionRegistration date: 6-Jun-2023
The Institute of Microbiology of the Chinese Academy of Sciences
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)48
Publications
PubMed1
Other datasets
BioSample75
Assembly48
Assembly details:
Assembly levelNumber of Assemblies
17
31
48
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_030409805.1ContigJAUFQP000000000SAMN35653682
CECT 8300
GCA_030409225.1ScaffoldJAUFPK000000000SAMN35653734
CECT 8326
GCA_030409495.1ContigJAUFQA000000000SAMN35653715
CECT 8551
GCA_030409555.1ScaffoldJAUFPU000000000SAMN35653723
CECT 7703
GCA_030409875.1ContigJAUFQR000000000SAMN35653678
CECT 7798
GCA_030409895.1ScaffoldJAUFQS000000000SAMN35653676
CECT 7706
GCA_030409905.1ContigJAUFQT000000000SAMN35653675
CECT 7682
GCA_030409685.1ContigJAUFQJ000000000SAMN35653704
CECT 8366
GCA_030409845.1ContigJAUFQQ000000000SAMN35653679
CECT 7908
GCA_030409795.1ContigJAUFQN000000000SAMN35653685
CECT 8460
GCA_030409235.1ScaffoldJAUFPO000000000SAMN35653729
CECT 7050
GCA_030409305.1ScaffoldJAUFPQ000000000SAMN35653727
CECT 5298
GCA_030409215.1ScaffoldJAUFPL000000000SAMN35653733
CECT 7896
GCA_030409265.1ScaffoldJAUFPM000000000SAMN35653731
CECT 7246
GCA_030409525.1ContigJAUFQB000000000SAMN35653714
CECT 7547
GCA_030409835.1ScaffoldJAUFQO000000000SAMN35653684
CECT 8444
GCA_030505015.1ContigJAUKUC000000000SAMN35653716
CECT 8869
GCA_030410045.1ContigJAUFRA000000000SAMN35653664
CECT 8947
GCA_030409435.1ContigJAUFPX000000000SAMN35653720
CECT 7069
GCA_030409475.1ContigJAUFPY000000000SAMN35653719
CECT 7068
GCA_030409395.1ScaffoldJAUFPT000000000SAMN35653724
CECT 7806
GCA_030409325.1ContigJAUFPR000000000SAMN35653726
CECT 8102
GCA_030409315.1ContigJAUFPS000000000SAMN35653725
CECT 7857
GCA_030409405.1ContigJAUFPV000000000SAMN35653722
CECT 7550
GCA_030409675.1ContigJAUFQK000000000SAMN35653700
CECT 8679
GCA_030409925.1ContigJAUFQU000000000SAMN35653672
CECT 7184
GCA_030409335.1ScaffoldJAUFPN000000000SAMN35653730
CECT 7131
GCA_030410095.1ContigJAUFRC000000000SAMN35653661
CECT 8482
GCA_030409415.1ContigJAUFPW000000000SAMN35653721
CECT 7114
GCA_030409655.1ContigJAUFQH000000000SAMN35653706
CECT 8670
GCA_030409775.1ContigJAUFQM000000000SAMN35653691
CECT 8527
GCA_030409715.1ContigJAUFQI000000000SAMN35653705
CECT 8288
GCA_030409115.1ScaffoldJAUFPJ000000000SAMN35653735
CECT 7319
GCA_030410075.1ContigJAUFRB000000000SAMN35653663
CECT 8816
GCA_030409605.1ContigJAUFQG000000000SAMN35653707
CECT 8570
GCA_030409725.1ScaffoldJAUFQL000000000SAMN35653692
CECT 8656
GCA_030409635.1ScaffoldJAUFQF000000000SAMN35653709
CECT 5085
GCA_030409995.1ContigJAUFQY000000000SAMN35653667
CECT 7226
GCA_030410025.1ScaffoldJAUFQZ000000000SAMN35653666
CECT 7222
GCA_030410015.1ScaffoldJAUFQX000000000SAMN35653668
CECT 7227
GCA_030409595.1ContigJAUFQD000000000SAMN35653711
CECT 7244
GCA_030409755.1ContigJAUFQE000000000SAMN35653710
CECT 5110
GCA_030409575.1ContigJAUFQC000000000SAMN35653712
CECT 7398
GCA_030409975.1ContigJAUFQW000000000SAMN35653669
CECT 7298
GCA_030409945.1ScaffoldJAUFQV000000000SAMN35653671
CECT 8851
GCA_030409295.1ScaffoldJAUFPP000000000SAMN35653728
CECT 5815
GCA_030505025.1ContigJAUKUB000000000SAMN35653717
CECT 8979
GCA_030409505.1ContigJAUFPZ000000000SAMN35653718
CECT 9128

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