estuary metagenome (ID 878949) - BioProject

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Accession: PRJNA878949 ID: 878949

estuary metagenome

Metagenomic study along the Pearl River Estuary salinity gradient

High-through sequencing data, assembly and metagenome-assembled genomes data for research on microbial salinity adaptation in the Pearl River Estuary.

Accession	PRJNA878949
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	estuary metagenome[Taxonomy ID: 1649191] unclassified sequences; metagenomes; ecological metagenomes; estuary metagenome
Submission	Registration date: 11-May-2023 Sun Yat-sen University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	127
SRA Experiments	11
Other datasets
BioSample	138
Assembly	127

Assembly details:

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Assembly level

Number of Assemblies

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Contig

Total

55
72
127

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_029977425.1	JAPOKX000000000	SAMN31727349	bin101	Actinomycetota bacterium
GCA_029977275.1	JAPOLD000000000	SAMN31727355	bin107	Actinomycetota bacterium
GCA_029977245.1	JAPOLG000000000	SAMN31727358	bin110	Actinomycetota bacterium
GCA_029979275.1	JAPOHT000000000	SAMN31727267	bin17	Actinomycetota bacterium
GCA_029979265.1	JAPOHW000000000	SAMN31727270	bin20	Actinomycetota bacterium
GCA_029979065.1	JAPOIG000000000	SAMN31727280	bin30	Actinomycetota bacterium
GCA_029978705.1	JAPOIY000000000	SAMN31727298	bin48	Actinomycetota bacterium
GCA_029978665.1	JAPOJA000000000	SAMN31727300	bin50	Actinomycetota bacterium
GCA_029978585.1	JAPOJD000000000	SAMN31727303	bin54	Actinomycetota bacterium
GCA_029978515.1	JAPOJG000000000	SAMN31727306	bin57	Actinomycetota bacterium
GCA_029978465.1	JAPOJK000000000	SAMN31727310	bin61	Actinomycetota bacterium
GCA_029978435.1	JAPOJM000000000	SAMN31727312	bin63	Actinomycetota bacterium
GCA_029978425.1	JAPOJL000000000	SAMN31727311	bin62	Actinomycetota bacterium
GCA_029978335.1	JAPOJQ000000000	SAMN31727316	bin67	Actinomycetota bacterium
GCA_029978365.1	JAPOJO000000000	SAMN31727314	bin65	Actinomycetota bacterium
GCA_029977785.1	JAPOKG000000000	SAMN31727332	bin83	Actinomycetota bacterium
GCA_029978325.1	JAPOJR000000000	SAMN31727317	bin68	Alphaproteobacteria bacterium
GCA_029978565.1	JAPOJF000000000	SAMN31727305	bin56	Alphaproteobacteria bacterium
GCA_029978785.1	JAPOIU000000000	SAMN31727294	bin44	Alphaproteobacteria bacterium
GCA_029979185.1	JAPOIA000000000	SAMN31727274	bin24	Alphaproteobacteria bacterium
GCA_029979515.1	JAPOHF000000000	SAMN31727253	bin2	Alphaproteobacteria bacterium
GCA_029977515.1	JAPOKS000000000	SAMN31727344	bin96	Alteromonas macleodii
GCA_029977685.1	JAPOKL000000000	SAMN31727337	bin89	Aurantimicrobium photophilum
GCA_029978965.1	JAPOIN000000000	SAMN31727287	bin37	Bacillus atrophaeus
GCA_029977945.1	JAPOJY000000000	SAMN31727324	bin75	Baekduiaceae bacterium
GCA_029978485.1	JAPOJJ000000000	SAMN31727309	bin60	Baekduiaceae bacterium
GCA_029979465.1	JAPOHJ000000000	SAMN31727257	bin6	Betaproteobacteria bacterium
GCA_029979245.1	JAPOHX000000000	SAMN31727271	bin21	Betaproteobacteria bacterium
GCA_029976865.1	JAPOLX000000000	SAMN31727375	bin128	Burkholderiales bacterium
GCA_029977105.1	JAPOLN000000000	SAMN31727365	bin117	Burkholderiales bacterium
GCA_029977705.1	JAPOKJ000000000	SAMN31727335	bin87	Burkholderiales bacterium
GCA_029979345.1	JAPOHR000000000	SAMN31727265	bin15	Candidatus Nanopelagicaceae bacterium
GCA_029977265.1	JAPOLE000000000	SAMN31727356	bin108	Candidatus Nitrosomarinus catalina
GCA_029977565.1	JAPOKQ000000000	SAMN31727342	bin94	Candidatus Nitrosomarinus catalina
GCA_029977435.1	JAPOKY000000000	SAMN31727350	bin102	Candidatus Nitrotoga fabula
GCA_029979485.1	JAPOHK000000000	SAMN31727258	bin7	Candidatus Planktophila limnetica
GCA_029977545.1	JAPOKR000000000	SAMN31727343	bin95	Candidatus Thalassarchaeaceae archaeon
GCA_029977345.1	JAPOLB000000000	SAMN31727353	bin105	Candidatus Thalassarchaeum sp.
GCA_029979025.1	JAPOIH000000000	SAMN31727281	bin31	Comamonadaceae bacterium
GCA_029978935.1	JAPOIO000000000	SAMN31727288	bin38	Comamonadaceae bacterium
GCA_029978745.1	JAPOIZ000000000	SAMN31727299	bin49	Comamonadaceae bacterium
GCA_029976755.1	JAPOMA000000000	SAMN31727378	bin131	Comamonadaceae bacterium
GCA_029977745.1	JAPOKH000000000	SAMN31727333	bin84	Erythrobacteraceae bacterium
GCA_029977385.1	JAPOKZ000000000	SAMN31727351	bin103	Euryarchaeota archaeon
GCA_029977645.1	JAPOKM000000000	SAMN31727338	bin90	Euryarchaeota archaeon
GCA_029977605.1	JAPOKN000000000	SAMN31727339	bin91	Euryarchaeota archaeon
GCA_029979405.1	JAPOHM000000000	SAMN31727260	bin9	Euryarchaeota archaeon
GCA_029979085.1	JAPOIF000000000	SAMN31727279	bin29	Euryarchaeota archaeon
GCA_029978685.1	JAPOIW000000000	SAMN31727296	bin46	Flavobacteriaceae bacterium
GCA_029979035.1	JAPOII000000000	SAMN31727282	bin32	Flavobacteriaceae bacterium
GCA_029977185.1	JAPOLJ000000000	SAMN31727361	bin113	Flavobacteriaceae bacterium
GCA_029976245.1	JAPOHO000000000	SAMN31727262	bin12	Flavobacteriaceae bacterium
GCA_029976145.1	JAPOHU000000000	SAMN31727268	bin18	Flavobacteriaceae bacterium
GCA_029977925.1	JAPOJX000000000	SAMN31727323	bin74	Gammaproteobacteria bacterium
GCA_029977505.1	JAPOKT000000000	SAMN31727345	bin97	Gammaproteobacteria bacterium
GCA_029978545.1	JAPOJI000000000	SAMN31727308	bin59	Gemmatimonas sp.
GCA_029978885.1	JAPOIP000000000	SAMN31727289	bin39	Hyphomicrobiales bacterium
GCA_029977085.1	JAPOLO000000000	SAMN31727366	bin119	Immundisolibacter cernigliae
GCA_029976945.1	JAPOLU000000000	SAMN31727372	bin125	Limnohabitans sp.
GCA_029977145.1	JAPOLL000000000	SAMN31727363	bin115	Methylocystaceae bacterium
GCA_029979375.1	JAPOHQ000000000	SAMN31727264	bin14	Microbacteriaceae bacterium
GCA_029977315.1	JAPOLC000000000	SAMN31727354	bin106	Microbacteriaceae bacterium
GCA_029977025.1	JAPOLR000000000	SAMN31727369	bin122	Microcystis sp. bin122
GCA_029979125.1	JAPOID000000000	SAMN31727277	bin27	Mycobacteriaceae bacterium
GCA_029979305.1	JAPOHV000000000	SAMN31727269	bin19	Mycobacteriaceae bacterium
GCA_029977845.1	JAPOKC000000000	SAMN31727328	bin79	Mycobacteriaceae bacterium
GCA_029978835.1	JAPOIT000000000	SAMN31727293	bin43	Nitrososphaerota archaeon
GCA_029979145.1	JAPOIC000000000	SAMN31727276	bin26	Opitutaceae bacterium
GCA_029977405.1	JAPOKW000000000	SAMN31727348	bin100	Paracoccaceae bacterium
GCA_029978625.1	JAPOJB000000000	SAMN31727301	bin51	Paracoccaceae bacterium
GCA_029978635.1	JAPOJE000000000	SAMN31727304	bin55	Paracoccaceae bacterium
GCA_029978505.1	JAPOJH000000000	SAMN31727307	bin58	Paracoccaceae bacterium
GCA_029979205.1	JAPOHZ000000000	SAMN31727273	bin23	Paracoccaceae bacterium
GCA_029979365.1	JAPOHP000000000	SAMN31727263	bin13	Paracoccaceae bacterium
GCA_029977805.1	JAPOKE000000000	SAMN31727330	bin81	Phenylobacterium parvum
GCA_029977045.1	JAPOLP000000000	SAMN31727367	bin120	Planctomycetota bacterium
GCA_029977825.1	JAPOKD000000000	SAMN31727329	bin80	Planctomycetota bacterium
GCA_029978375.1	JAPOJN000000000	SAMN31727313	bin64	Planctomycetota bacterium
GCA_029978905.1	JAPOIM000000000	SAMN31727286	bin36	Planctomycetota bacterium
GCA_029979545.1	JAPOHI000000000	SAMN31727256	bin5	Planctomycetota bacterium
GCA_029979005.1	JAPOIJ000000000	SAMN31727283	bin33	Planctomycetota bacterium
GCA_029977585.1	JAPOKP000000000	SAMN31727341	bin93	Polynucleobacter acidiphobus
GCA_029978985.1	JAPOIK000000000	SAMN31727284	bin34	Pseudomonadota bacterium
GCA_029979105.1	JAPOIE000000000	SAMN31727278	bin28	Pseudomonadota bacterium
GCA_029979165.1	JAPOIB000000000	SAMN31727275	bin25	Pseudomonadota bacterium
GCA_029979325.1	JAPOHS000000000	SAMN31727266	bin16	Pseudomonadota bacterium
GCA_029979415.1	JAPOHL000000000	SAMN31727259	bin8	Pseudomonadota bacterium
GCA_029977905.1	JAPOJZ000000000	SAMN31727325	bin76	Pseudomonadota bacterium
GCA_029977665.1	JAPOKK000000000	SAMN31727336	bin88	Pseudomonadota bacterium
GCA_029977715.1	JAPOKI000000000	SAMN31727334	bin86	Pseudomonadota bacterium
GCA_029976895.1	JAPOLV000000000	SAMN31727373	bin126	Pseudomonadota bacterium
GCA_029977765.1	JAPOKF000000000	SAMN31727331	bin82	Rhodocyclaceae bacterium
GCA_029978755.1	JAPOIV000000000	SAMN31727295	bin45	Rhodocyclales bacterium
GCA_029977125.1	JAPOLM000000000	SAMN31727364	bin116	Synechococcaceae bacterium bin116
GCA_029977065.1	JAPOLS000000000	SAMN31727370	bin123	Synechococcaceae bacterium bin123
GCA_029979535.1	JAPOHE000000000	SAMN31727252	bin1	Synechococcus sp. bin1
GCA_029976975.1	JAPOLT000000000	SAMN31727371	bin124	Synechococcus sp. bin124
GCA_029978605.1	JAPOJC000000000	SAMN31727302	bin52	Synechococcus sp. bin52
GCA_029977485.1	JAPOKU000000000	SAMN31727346	bin98	Synechococcus sp. bin98
GCA_029977225.1	JAPOLH000000000	SAMN31727359	bin111	Verrucomicrobiaceae bacterium
GCA_029979565.1	JAPOHG000000000	SAMN31727254	bin3	bacterium
GCA_029979425.1	JAPOHN000000000	SAMN31727261	bin10	bacterium
GCA_029979505.1	JAPOHH000000000	SAMN31727255	bin4	bacterium
GCA_029979225.1	JAPOHY000000000	SAMN31727272	bin22	bacterium
GCA_029978715.1	JAPOIX000000000	SAMN31727297	bin47	bacterium
GCA_029978925.1	JAPOIL000000000	SAMN31727285	bin35	bacterium
GCA_029978815.1	JAPOIQ000000000	SAMN31727290	bin40	bacterium
GCA_029978805.1	JAPOIS000000000	SAMN31727292	bin42	bacterium
GCA_029978825.1	JAPOIR000000000	SAMN31727291	bin41	bacterium
GCA_029978305.1	JAPOJS000000000	SAMN31727318	bin69	bacterium
GCA_029978265.1	JAPOJT000000000	SAMN31727319	bin70	bacterium
GCA_029978275.1	JAPOJU000000000	SAMN31727320	bin71	bacterium
GCA_029978385.1	JAPOJP000000000	SAMN31727315	bin66	bacterium
GCA_029978085.1	JAPOJV000000000	SAMN31727321	bin72	bacterium
GCA_029977885.1	JAPOKB000000000	SAMN31727327	bin78	bacterium
GCA_029977865.1	JAPOKA000000000	SAMN31727326	bin77	bacterium
GCA_029977965.1	JAPOJW000000000	SAMN31727322	bin73	bacterium
GCA_029977205.1	JAPOLI000000000	SAMN31727360	bin112	bacterium
GCA_029977165.1	JAPOLK000000000	SAMN31727362	bin114	bacterium
GCA_029976905.1	JAPOLW000000000	SAMN31727374	bin127	bacterium
GCA_029977005.1	JAPOLQ000000000	SAMN31727368	bin121	bacterium
GCA_029977465.1	JAPOKV000000000	SAMN31727347	bin99	bacterium
GCA_029977615.1	JAPOKO000000000	SAMN31727340	bin92	bacterium
GCA_029977305.1	JAPOLF000000000	SAMN31727357	bin109	bacterium
GCA_029977365.1	JAPOLA000000000	SAMN31727352	bin104	bacterium
GCA_029976805.1	JAPOLY000000000	SAMN31727376	bin129	bacterium
GCA_029976745.1	JAPOLZ000000000	SAMN31727377	bin130	bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	64
Data volume, Mbytes	41785

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estuary metagenome

Metagenomic study along the Pearl River Estuary salinity gradient

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