cellular organisms (ID 918567) - BioProject

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Accession: PRJDB15044 ID: 918567

cellular organisms

De novo sequencing and analysis for NBRC strains in GCM 10K project

The project aims to sequence and analyse several strain submitted by NBRC. Assembly sequence was gained by de novo methods, subsequently regarding annotation information was produced by our genomic analysis pipeline. Further study will be carried out with these data.

Accession	PRJDB15044
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Wu L et al., "The Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project: providing services to taxonomists for standard genome sequencing and annotation.", Int J Syst Evol Microbiol, 2019 Apr;69(4):895-898
Submission	Registration date: 4-Jan-2023 WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6068
WGS master	55
Genomic DNA	14
Protein Sequences	289830
Publications
PubMed	1
Other datasets
BioSample	66
Assembly	66

Assembly details:

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Assembly level

Number of Assemblies

11
30
25
66

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_030160635.1	BSOS00000000		SAMD00576795	NBRC 112502	Acidocella aquatica
GCA_030161495.1	BSUH00000000		SAMD00582105	NBRC 112581	Acinetobacter gyllenbergii
GCA_030160655.1	BSOT00000000		SAMD00576796	NBRC 110023	Agaribacter marinus
GCA_030296695.1		1	SAMD00582119	NBRC 112812	Agromyces mangrovi
GCA_030296635.1		1	SAMD00582113	NBRC 109019	Agromyces marinus
GCA_030161695.1	BSUR00000000		SAMD00582123	NBRC 103102	Alicyclobacillus contaminans
GCA_030161735.1	BSUT00000000		SAMD00582125	NBRC 103109	Alicyclobacillus fastidiosus
GCA_030161715.1	BSUS00000000		SAMD00582124	NBRC 103105	Alicyclobacillus sacchari
GCA_030160675.1	BSOU00000000		SAMD00576797	NBRC 105001	Aliivibrio sifiae
GCA_030161855.1	BSUZ00000000		SAMD00582134	NBRC 108730	Angustibacter aerolatus
GCA_030161575.1	BSUL00000000		SAMD00582116	NBRC 112289	Arenivirga flava
GCA_030161535.1	BSUJ00000000		SAMD00582107	NBRC 105830	Arsenicicoccus piscis
GCA_030160695.1	BSOV00000000		SAMD00576798	NBRC 102291	Azospirillum oryzae
GCA_030296655.1		1	SAMD00582114	NBRC 110608	Barrientosiimonas endolithica
GCA_030160715.1	BSOW00000000		SAMD00576799	NBRC 102520	Bradyrhizobium iriomotense
GCA_030160735.1	BSOX00000000		SAMD00576800	NBRC 100396	Bradyrhizobium liaoningense
GCA_030160755.1	BSOY00000000		SAMD00576801	NBRC 110107	Brevundimonas denitrificans
GCA_030160775.1	BSOZ00000000		SAMD00576802	NBRC 104970	Chitiniphilus shinanonensis
GCA_030161095.1	BSPP00000000		SAMD00576818	NBRC 111766	Cypionkella aquatica
GCA_030161515.1	BSUI00000000		SAMD00582106	NBRC 110141	Deinococcus metallilatus
GCA_030161615.1	BSUN00000000		SAMD00582118	NBRC 112299	Demequina litorisediminis
GCA_030296675.1		1	SAMD00582115	NBRC 112286	Demequina sediminis
GCA_030296615.1		2	SAMD00582112	NBRC 108728	Frondihabitans sucicola
GCA_030161875.1	BSVA00000000		SAMD00582135	NBRC 108755	Homoserinibacter gongjuensis
GCA_030160815.1	BSPB00000000		SAMD00576804	NBRC 109341	Hydrogenophaga electricum
GCA_030160835.1	BSPC00000000		SAMD00576805	NBRC 101365	Labrys miyagiensis
GCA_030161455.1	BSUF00000000		SAMD00582103	NBRC 113245	Leuconostoc gasicomitatum
GCA_030161755.1	BSUU00000000		SAMD00582128	NBRC 113246	Leuconostoc gelidum subsp. gelidum
GCA_030161775.1	BSUV00000000		SAMD00582129	NBRC 113542	Leuconostoc litchii
GCA_030161595.1	BSUM00000000		SAMD00582117	NBRC 112290	Litorihabitans aurantiacus
GCA_030161555.1	BSUK00000000		SAMD00582109	NBRC 106348	Luteimicrobium album
GCA_030160855.1	BSPD00000000		SAMD00576806	NBRC 110095	Marinibactrum halimedae
GCA_030160875.1	BSPE00000000		SAMD00576807	NBRC 107164	Mesorhizobium albiziae
GCA_030160895.1	BSPF00000000		SAMD00576808	NBRC 102499	Mesorhizobium tianshanense
GCA_030296715.1		1	SAMD00582126	NBRC 105197	Methanobacterium ferruginis
GCA_030296735.1		2	SAMD00582127	NBRC 105198	Methanobacterium petrolearium
GCA_030160915.1	BSPG00000000		SAMD00576809	NBRC 107710	Methylobacterium brachythecii
GCA_030160935.1	BSPH00000000		SAMD00576810	NBRC 107716	Methylobacterium gnaphalii
GCA_030160955.1	BSPI00000000		SAMD00576811	NBRC 103626	Methylobacterium gregans
GCA_030160975.1	BSPJ00000000		SAMD00576812	NBRC 107714	Methylobacterium haplocladii
GCA_030160995.1	BSPK00000000		SAMD00576813	NBRC 107715	Methylobacterium oxalidis
GCA_030161015.1	BSPL00000000		SAMD00576814	NBRC 103632	Methylobacterium tardum
GCA_030296755.1		1	SAMD00582133	NBRC 102421	Methylophaga marina
GCA_030161815.1	BSUX00000000		SAMD00582131	NBRC 15686	Methylorubrum aminovorans
GCA_030296555.1		1	SAMD00582108	NBRC 106310	Microbacterium suwonense
GCA_030161635.1	BSUO00000000		SAMD00582120	NBRC 113072	Mobilicoccus caccae
GCA_030296595.1		1	SAMD00582111	NBRC 108725	Naasia aerilata
GCA_030161035.1	BSPM00000000		SAMD00576815	NBRC 111955	Oharaeibacter diazotrophicus
GCA_030161055.1	BSPN00000000		SAMD00576816	NBRC 100637	Paracoccus marinus
GCA_030161075.1	BSPO00000000		SAMD00576817	NBRC 112785	Paraferrimonas haliotis
GCA_030296575.1		2	SAMD00582110	NBRC 108565	Paraoerskovia sediminicola
GCA_030161135.1	BSPR00000000		SAMD00576820	NBRC 109400	Piscinibacter gummiphilus
GCA_030161895.1	BSVB00000000		SAMD00582136	NBRC 108894	Pseudolysinimonas kribbensis
GCA_030161115.1	BSPQ00000000		SAMD00576819	NBRC 103166	Psychromonas marina
GCA_030161835.1	BSUY00000000		SAMD00582132	NBRC 102030	Shewanella glacialipiscicola
GCA_030160795.1	BSPA00000000		SAMD00576803	NBRC 14780	Sinorhizobium fredii
GCA_030161155.1	BSPS00000000		SAMD00576821	NBRC 112973	Sphingobium jiangsuense
GCA_030161175.1	BSPT00000000		SAMD00576822	NBRC 109639	Sphingomonas psychrolutea
GCA_030161195.1	BSPU00000000		SAMD00576823	NBRC 109054	Sulfitobacter porphyrae
GCA_030161655.1	BSUP00000000		SAMD00582121	NBRC 100498	Tetragenococcus halophilus subsp. halophilus DSM 20339
GCA_030161475.1	BSUG00000000		SAMD00582104	NBRC 114546	Tetragenococcus halophilus subsp. flandriensis
GCA_030161675.1	BSUQ00000000		SAMD00582122	NBRC 100499	Tetragenococcus muriaticus
GCA_030161795.1	BSUW00000000		SAMD00582130	NBRC 114545	Tetragenococcus osmophilus
GCA_030161215.1	BSPV00000000		SAMD00576824	NBRC 111146	Vibrio algivorus
GCA_030161235.1	BSPW00000000		SAMD00576825	NBRC 108723	Vibrio zhanjiangensis
GCA_030161255.1	BSPX00000000		SAMD00576826	NBRC 102407	Zoogloea oryzae

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De novo sequencing and analysis for NBRC strains in GCM 10K project

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