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Accession: PRJDB5072 ID: 895236

Tokudaia osimensis (Amami-oshima island spiny rat)

Whole genome sequences of the Amami spiny rat, Tokudaia osimensis

See Genome Information for Tokudaia osimensis

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This project is a component of the The genome sequences of the Amami spiny rat, Tokudaia osimensis

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5 additional projects are related by organism.

2 additional projects are components of the The genome sequences of the Amami spiny rat, Tokudaia osimensis.

The Amami spiny rat, Tokudaia osimensis, has very unique sex chromosomes and sex-determining mechanism. More...

Accession	PRJDB5072
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Tokudaia osimensis[Taxonomy ID: 73109] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Tokudaia; Tokudaia osimensis
Publications	Terao M et al., "Turnover of mammal sex chromosomes in the Sry-deficient Amami spiny rat is due to male-specific upregulation of Sox9.", Proc Natl Acad Sci U S A, 2022 Dec 6;119(49):e2211574119
Grants	"Genome Science" (Grant ID 221S0002, Japanese Ministry of Education, Culture, Sports, Science and Technology)
Submission	Registration date: 27-Oct-2022 Hokkaido University, Graduate School of Life Science

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	15
WGS master	1
Genomic DNA	14
SRA Experiments	32
Protein Sequences	18
Publications
PubMed	1
PMC	1
Other datasets
BioSample	10
Assembly	1

Assembly details:

Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCA_027943515.1	Scaffold	BPMZ00000000	1	SAMD00056911	Tokudaia osimensis

SRA Data Details

Parameter	Value
Data volume, Gbases	1,063
Data volume, Tbytes	0.47

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BioProject Links for Nucleotide (Select 2324192802) (1)
BioProject
Tokudaia osimensis
Tokudaia osimensis
Whole genome sequences of the Amami spiny rat, Tokudaia osimensis

BioProject
Zfp36 zinc finger protein 36 [Mus musculus]
Zfp36 zinc finger protein 36 [Mus musculus]
Gene ID:22695

Gene
Gene Links for GEO Profiles (Select 99879326) (1)
Gene
PREDICTED: Mus musculus solute carrier family 7 (cationic amino acid transporter...
PREDICTED: Mus musculus solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 (Slc7a6), transcript variant X2, mRNA
gi|1907190000|ref|XM_006531136.4|

Nucleotide

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