ID 859362 - BioProject

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Accession: PRJEB54754 ID: 859362

EMG produced TPA metagenomics assembly of PRJNA656314 data set (Environmental concentrations of antibiotics alter the zebrafish gut microbiome structure and potential functions).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA656314, and was assembled with metaSPAdes v3. More...

Accession	PRJEB54754
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 16-Jul-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1919
WGS master	56
Publications
PubMed	1
PMC	1
Other datasets
BioSample	56
Assembly	56

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

56
56

Assembly	WGS	BioSample	Taxonomy
GCA_945957285.1	CAMFKU000000000	SAMEA110424203	Aeromonas hydrophila
GCA_945957145.1	CAMFJU000000000	SAMEA110424235	Aeromonas jandaei
GCA_945957155.1	CAMFJG000000000	SAMEA110424223	Cetobacterium somerae
GCA_945957085.1	CAMFKJ000000000	SAMEA110424200	Enterobacter roggenkampii
GCA_945957115.1	CAMFLM000000000	SAMEA110424209	Pedobacter soli
GCA_945956985.1	CAMFJM000000000	SAMEA110424224	Plesiomonas shigelloides
GCA_945957515.1	CAMFLO000000000	SAMEA110424202	Shewanella oneidensis
GCA_945957335.1	CAMFLJ000000000	SAMEA110424227	uncultured Actinomycetes bacterium
GCA_945957385.1	CAMFKP000000000	SAMEA110424204	uncultured Aeromonadaceae bacterium
GCA_945957575.1	CAMFLW000000000	SAMEA110424249	uncultured Aeromonas sp.
GCA_945957535.1	CAMFLS000000000	SAMEA110424216	uncultured Alphaproteobacteria bacterium
GCA_945957365.1	CAMFKI000000000	SAMEA110424247	uncultured Alphaproteobacteria bacterium
GCA_945957615.1	CAMFLY000000000	SAMEA110424228	uncultured Alsobacter sp.
GCA_945957525.1	CAMFLA000000000	SAMEA110424206	uncultured Aquitalea sp.
GCA_945956895.1	CAMFJF000000000	SAMEA110424239	uncultured Bosea sp.
GCA_945957345.1	CAMFKW000000000	SAMEA110424198	uncultured Bosea sp.
GCA_945957565.1	CAMFLT000000000	SAMEA110424250	uncultured Candidatus Protochlamydia sp.
GCA_945957205.1	CAMFJJ000000000	SAMEA110424236	uncultured Cetobacterium sp.
GCA_945956925.1	CAMFJI000000000	SAMEA110424197	uncultured Cetobacterium sp.
GCA_945957625.1	CAMFLP000000000	SAMEA110424232	uncultured Chitinibacter sp.
GCA_945957185.1	CAMFKA000000000	SAMEA110424251	uncultured Chlamydiaceae bacterium
GCA_945957075.1	CAMFJP000000000	SAMEA110424245	uncultured Chlamydiae bacterium
GCA_945957095.1	CAMFKD000000000	SAMEA110424212	uncultured Chlamydiae bacterium
GCA_945957235.1	CAMFKF000000000	SAMEA110424201	uncultured Comamonadaceae bacterium
GCA_945957555.1	CAMFLX000000000	SAMEA110424241	uncultured Cytophagales bacterium
GCA_945957265.1	CAMFKO000000000	SAMEA110424211	uncultured Dechloromonas sp.
GCA_945956935.1	CAMFJD000000000	SAMEA110424226	uncultured Firmicutes bacterium
GCA_945957065.1	CAMFJK000000000	SAMEA110424221	uncultured Firmicutes bacterium
GCA_945957245.1	CAMFLD000000000	SAMEA110424208	uncultured Flavobacterium sp.
GCA_945957635.1	CAMFLZ000000000	SAMEA110424215	uncultured Flavobacterium sp.
GCA_945956915.1	CAMFJH000000000	SAMEA110424219	uncultured Francisellaceae bacterium
GCA_945957315.1	CAMFKQ000000000	SAMEA110424230	uncultured Hyphomicrobium sp.
GCA_945957605.1	CAMFLR000000000	SAMEA110424242	uncultured Isosphaeraceae bacterium
GCA_945956945.1	CAMFJO000000000	SAMEA110424213	uncultured Legionellales bacterium
GCA_945957175.1	CAMFJL000000000	SAMEA110424252	uncultured Legionellales bacterium
GCA_945957465.1	CAMFLC000000000	SAMEA110424199	uncultured Leifsonia sp.
GCA_945956975.1	CAMFKC000000000	SAMEA110424237	uncultured Methylocystaceae bacterium
GCA_945957055.1	CAMFJY000000000	SAMEA110424225	uncultured Microbacterium sp.
GCA_945957475.1	CAMFKZ000000000	SAMEA110424207	uncultured Microbacterium sp.
GCA_945957545.1	CAMFLV000000000	SAMEA110424231	uncultured Microbacterium sp.
GCA_945957405.1	CAMFLL000000000	SAMEA110424229	uncultured Mycolicibacterium sp.
GCA_945957395.1	CAMFKE000000000	SAMEA110424220	uncultured Opitutia bacterium
GCA_945957305.1	CAMFLN000000000	SAMEA110424243	uncultured Planctomycetaceae bacterium
GCA_945957495.1	CAMFLG000000000	SAMEA110424214	uncultured Pseudorhodobacter sp.
GCA_945957595.1	CAMFLU000000000	SAMEA110424244	uncultured Pseudorhodoplanes sp.
GCA_945957355.1	CAMFKM000000000	SAMEA110424217	uncultured Reyranella sp.
GCA_945956955.1	CAMFKB000000000	SAMEA110424210	uncultured Rhizobium sp.
GCA_945957255.1	CAMFLF000000000	SAMEA110424238	uncultured Rhodobacter sp.
GCA_945956905.1	CAMFJE000000000	SAMEA110424246	uncultured Rhodobacteraceae bacterium
GCA_945957135.1	CAMFLK000000000	SAMEA110424222	uncultured Rhodospirillales bacterium
GCA_945957125.1	CAMFJT000000000	SAMEA110424233	uncultured Rhodospirillales bacterium
GCA_945956965.1	CAMFJS000000000	SAMEA110424218	uncultured Roseateles sp.
GCA_945957375.1	CAMFKX000000000	SAMEA110424240	uncultured Roseiarcus sp.
GCA_945957225.1	CAMFKK000000000	SAMEA110424248	uncultured Sphingobacteriia bacterium
GCA_945957295.1	CAMFLH000000000	SAMEA110424205	uncultured Uliginosibacterium sp.
GCA_945957015.1	CAMFKH000000000	SAMEA110424234	uncultured Uliginosibacterium sp.

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EMG produced TPA metagenomics assembly of PRJNA656314 data set (Environmental concentrations of antibiotics alter the zebrafish gut microbiome structure and potential functions).

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