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Accession: PRJEB53320 ID: 846049

France oyster farm Vibrio chagasii collection (2017)

Genome sequencing of a collection of Vibrio chagasii isolated during a five month time serie sampling in an oyster farm (France).

The explorations of natural populations of vibrios and their infective phages revealed a high specialization of phages but also suggest that divergence in vibrio ecology is reflected in interactions with different groups of phages and host range of the phages, which constitutes our present working hypothesis. More...
AccessionPRJEB53320
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 5-Jun-2022
The French Research Institute for Exploitation of the Sea
Locus Tag PrefixVCHA57P527
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)6708
WGS master136
Protein Sequences689302
Other datasets
BioSample136
Assembly136
Assembly details:
Assembly levelNumber of Assemblies
136
136
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_943744695.1ContigCALSIE000000000SAMEA20012527
50_P_417
GCA_943752475.1ContigCALSKQ000000000SAMEA20012561
56_P_521
GCA_943752415.1ContigCALSKK000000000SAMEA20012469
37_P_200
GCA_943739175.1ContigCALSGT000000000SAMEA20012442
34_P_115
GCA_943750435.1ContigCALSJU000000000SAMEA20012544
53_O_474
GCA_943752405.1ContigCALSKJ000000000SAMEA20012531
51_O_448
GCA_943739325.1ContigCALSGS000000000SAMEA20012435
31_O_71
GCA_943752435.1ContigCALSKM000000000SAMEA20012476
38_P_217
GCA_943746595.1ContigCALSIY000000000SAMEA20012542
53_O_469
GCA_943749555.1ContigCALSJN000000000SAMEA20012472
38_O_206
GCA_943748415.1ContigCALSJC000000000SAMEA20012535
52_P_456
GCA_943739275.1ContigCALSGU000000000SAMEA20012451
35_O_137
GCA_943748335.1ContigCALSJB000000000SAMEA20012501
43_P_284
GCA_943753765.1ContigCALSLC000000000SAMEA20012478
39_O_224
GCA_943739995.1ContigCALSHJ000000000SAMEA20012460
36_P_166
GCA_943739035.1ContigCALSGQ000000000SAMEA20012430
28_FP_16
GCA_943746535.1ContigCALSIX000000000SAMEA20012517
50_O_393
GCA_943739935.1ContigCALSHD000000000SAMEA20012444
34_P_117
GCA_943738695.1ContigCALSGJ000000000SAMEA20012443
34_P_116
GCA_943745355.1ContigCALSII000000000SAMEA20012506
48_P_434
GCA_943739885.1ContigCALSHC000000000SAMEA20012450
35_O_135
GCA_943749015.1ContigCALSJJ000000000SAMEA20012490
41_O_247
GCA_943752535.1ContigCALSKW000000000SAMEA20012515
50_O_384
GCA_943745775.1ContigCALSIO000000000SAMEA20012541
53_O_468
GCA_943745335.1ContigCALSIK000000000SAMEA20012496
43_P_273
GCA_943741425.1ContigCALSHU000000000SAMEA20012484
40_O_237
GCA_943739065.1ContigCALSGR000000000SAMEA20012452
35_O_141
GCA_943741165.1ContigCALSHP000000000SAMEA20012481
40_O_231
GCA_943752365.1ContigCALSKC000000000SAMEA20012513
49_P_381
GCA_943749435.1ContigCALSJM000000000SAMEA20012551
54_P_495
GCA_943745585.1ContigCALSIM000000000SAMEA20012486
40_P_240
GCA_943746255.1ContigCALSIV000000000SAMEA20012534
52_P_455
GCA_943752955.1ContigCALSLA000000000SAMEA20012549
54_P_486
GCA_943740495.1ContigCALSHN000000000SAMEA20012525
50_P_415
GCA_943753805.1ContigCALSLD000000000SAMEA20012474
38_O_210
GCA_943752455.1ContigCALSKO000000000SAMEA20012563
57_P_526
GCA_943745655.1ContigCALSIQ000000000SAMEA20012540
53_O_466
GCA_943748975.1ContigCALSJH000000000SAMEA20012494
43_O_270
GCA_943752305.1ContigCALSJZ000000000SAMEA20012514
49_P_382
GCA_943749075.1ContigCALSJL000000000SAMEA20012532
52_P_453
GCA_943738925.1ContigCALSGL000000000SAMEA20012449
34_P_131
GCA_943752375.1ContigCALSKI000000000SAMEA20012538
53_O_463
GCA_943739515.1ContigCALSGX000000000SAMEA20012433
29_O_39
GCA_943752555.1ContigCALSKY000000000SAMEA20012564
57_P_527
GCA_943750225.1ContigCALSJR000000000SAMEA20012553
54_P_499
GCA_943754435.1ContigCALSLJ000000000SAMEA20012488
41_O_245
GCA_943739615.1ContigCALSGY000000000SAMEA20012453
35_O_142
GCA_943753835.1ContigCALSLE000000000SAMEA20012473
38_O_209
GCA_943745385.1ContigCALSIH000000000SAMEA20012503
47_P_369
GCA_943739785.1ContigCALSHA000000000SAMEA20012446
34_P_121
GCA_943739705.1ContigCALSHF000000000SAMEA20012432
29_O_37
GCA_943746135.1ContigCALSIU000000000SAMEA20012533
52_P_454
GCA_943748785.1ContigCALSJD000000000SAMEA20012521
50_O_405
GCA_943752545.1ContigCALSKX000000000SAMEA20012537
53_O_462
GCA_943739385.1ContigCALSGW000000000SAMEA20012454
35_O_143
GCA_943752345.1ContigCALSKB000000000SAMEA20012516
50_O_387
GCA_943745955.1ContigCALSIS000000000SAMEA20012500
43_P_282
GCA_943748815.1ContigCALSJF000000000SAMEA20012508
48_P_437
GCA_943738995.1ContigCALSGM000000000SAMEA20012434
30_O_60
GCA_943738705.1ContigCALSGK000000000SAMEA20012457
36_O_163
GCA_943748865.1ContigCALSJG000000000SAMEA20012504
48_O_428
GCA_943745405.1ContigCALSIG000000000SAMEA20012507
48_P_435
GCA_943739265.1ContigCALSGP000000000SAMEA20012441
34_P_114
GCA_943739195.1ContigCALSGN000000000SAMEA20012431
28_O_22
GCA_943739825.1ContigCALSHB000000000SAMEA20012437
32_O_87
GCA_943752485.1ContigCALSKR000000000SAMEA20012526
50_P_416
GCA_943745945.1ContigCALSIR000000000SAMEA20012548
54_O_485
GCA_943740015.1ContigCALSHG000000000SAMEA20012462
37_O_173
GCA_943752425.1ContigCALSKL000000000SAMEA20012471
37_P_203
GCA_943741475.1ContigCALSHX000000000SAMEA20012487
40_P_242
GCA_943740225.1ContigCALSHM000000000SAMEA20012523
50_O_409
GCA_943751685.1ContigCALSJW000000000SAMEA20012510
48_P_442
GCA_943746305.1ContigCALSIW000000000SAMEA20012489
41_O_246
GCA_943738625.1ContigCALSGG000000000SAMEA20012438
32_P_90
GCA_943740305.1ContigCALSHO000000000SAMEA20012509
48_P_439
GCA_943746775.1ContigCALSJA000000000SAMEA20012545
53_O_480
GCA_943741595.1ContigCALSIA000000000SAMEA20012475
38_P_215
GCA_943752385.1ContigCALSKG000000000SAMEA20012536
52_P_461
GCA_943749065.1ContigCALSJK000000000SAMEA20012485
40_P_238
GCA_943752315.1ContigCALSKA000000000SAMEA20012518
50_O_396
GCA_943752035.1ContigCALSJX000000000SAMEA20012557
55_O_507
GCA_943752355.1ContigCALSKE000000000SAMEA20012530
51_O_444
GCA_943745475.1ContigCALSIJ000000000SAMEA20012480
39_P_230
GCA_943740195.1ContigCALSHL000000000SAMEA20012439
34_O_109
GCA_943750355.1ContigCALSJT000000000SAMEA20012552
54_P_496
GCA_943752395.1ContigCALSKH000000000SAMEA20012543
53_O_473
GCA_943749665.1ContigCALSJP000000000SAMEA20012470
37_P_202
GCA_943752515.1ContigCALSKU000000000SAMEA20012556
55_O_506
GCA_943750115.1ContigCALSJQ000000000SAMEA20012554
54_P_500
GCA_943740035.1ContigCALSHH000000000SAMEA20012455
35_P_150
GCA_943739645.1ContigCALSGZ000000000SAMEA20012459
36_P_164
GCA_943752875.1ContigCALSKZ000000000SAMEA20012528
50_P_420
GCA_943740095.1ContigCALSHK000000000SAMEA20012461
36_P_168
GCA_943741235.1ContigCALSHQ000000000SAMEA20012495
43_P_272
GCA_943748915.1ContigCALSJI000000000SAMEA20012502
44_O_286
GCA_943750285.1ContigCALSJS000000000SAMEA20012546
53_P_481
GCA_943754135.1ContigCALSLG000000000SAMEA20012555
54_P_501
GCA_943752525.1ContigCALSKV000000000SAMEA20012505
48_O_429
GCA_943752325.1ContigCALSKF000000000SAMEA20012524
50_O_413
GCA_943739905.1ContigCALSHE000000000SAMEA20012458
36_P_161
GCA_943741395.1ContigCALSHT000000000SAMEA20012482
40_O_235
GCA_943746605.1ContigCALSIZ000000000SAMEA20012464
37_P_191
GCA_943741285.1ContigCALSHS000000000SAMEA20012498
43_P_275
GCA_943752145.1ContigCALSJY000000000SAMEA20012529
50_P_424
GCA_943749675.1ContigCALSJO000000000SAMEA20012468
37_P_199
GCA_943741315.1ContigCALSHR000000000SAMEA20012493
42_P_256
GCA_943745975.1ContigCALSIT000000000SAMEA20012511
49_P_379
GCA_943741515.1ContigCALSHY000000000SAMEA20012483
40_O_236
GCA_943745785.1ContigCALSIN000000000SAMEA20012559
55_P_509
GCA_943741375.1ContigCALSHV000000000SAMEA20012499
43_P_277
GCA_943738645.1ContigCALSGH000000000SAMEA20012447
34_P_126
GCA_943739105.1ContigCALSGV000000000SAMEA20012440
34_P_112
GCA_943741555.1ContigCALSHZ000000000SAMEA20012477
39_O_220
GCA_943753425.1ContigCALSLB000000000SAMEA20012562
57_P_511
GCA_943752445.1ContigCALSKN000000000SAMEA20012539
53_O_464
GCA_943754405.1ContigCALSLH000000000SAMEA20012497
43_P_274
GCA_943744945.1ContigCALSID000000000SAMEA20012512
49_P_380
GCA_943748825.1ContigCALSJE000000000SAMEA20012519
50_O_402
GCA_943738935.1ContigCALSGO000000000SAMEA20012448
34_P_129
GCA_943738505.1ContigCALSGI000000000SAMEA20012436
31_O_73
GCA_943754085.1ContigCALSLF000000000SAMEA20012558
55_O_508
GCA_943745805.1ContigCALSIP000000000SAMEA20012560
56_P_515
GCA_943752505.1ContigCALSKT000000000SAMEA20012547
54_O_482
GCA_943741445.1ContigCALSHW000000000SAMEA20012491
41_O_249
GCA_943745025.1ContigCALSIF000000000SAMEA20012522
50_O_407
GCA_943752335.1ContigCALSKD000000000SAMEA20012520
50_O_404
GCA_943741685.1ContigCALSIB000000000SAMEA20012466
37_P_193
GCA_943752465.1ContigCALSKP000000000SAMEA20012463
37_O_177
GCA_943745305.1ContigCALSIL000000000SAMEA20012479
39_P_226
GCA_943738445.1ContigCALSGF000000000SAMEA20012456
36_O_157
GCA_943738405.1ContigCALSGE000000000SAMEA20012429
27_O_13
GCA_943754425.1ContigCALSLI000000000SAMEA20012492
42_O_253
GCA_943752495.1ContigCALSKS000000000SAMEA20012465
37_P_192
GCA_943742255.1ContigCALSIC000000000SAMEA20012550
54_P_489
GCA_943750455.1ContigCALSJV000000000SAMEA20012467
37_P_194
GCA_943740055.1ContigCALSHI000000000SAMEA20012445
34_P_120

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