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Accession: PRJNA747101 ID: 747101

Mycobacterium

Whole genome sequencing of non-tuberculosis mycobacteria type-strains

This project aims to complement the NTM genome database by analyzing the complete genome of the NTM type strains.

Accession	PRJNA747101
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Igarashi Y et al., "Complete Genome Sequences of 14 Nontuberculous Mycobacteria Type Strains.", Microbiol Resour Announc, 2023 Feb 16;12(2):e0121422
Submission	Registration date: 15-Jul-2021 Research Institute of Tuberculosis
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	25
SRA Experiments	36
Protein Sequences	72639
Publications
PubMed	1
PMC	1
Other datasets
BioSample	22
Assembly	14

Assembly details:

Assembly level

Number of Assemblies

Complete genome

Complete genome

14
14

Assembly	Level	Chrs	BioSample	Strain	Taxonomy
GCA_022374895.2		4	SAMN20254258	ATCC 51985	Mycobacterium lentiflavum
GCA_019645855.1		1	SAMN20254263	ATCC 29571	Mycobacterium malmoense
GCA_022430545.2		1	SAMN20254271	DSM 45127	Mycobacterium paraterrae
GCA_022374915.3		2	SAMN20254269	ATCC 19423	Mycobacterium ulcerans
GCA_022370835.2		2	SAMN20254257	DSM 45575	Mycolicibacillus parakoreensis
GCA_019645815.1		1	SAMN20254261	JCM 30995	Mycolicibacter heraklionensis
GCA_022374935.2		1	SAMN20254270	DSM 100883	Mycolicibacter virginiensis
GCA_022370635.3		3	SAMN20254251	JCM 16369	Mycolicibacterium crocinum
GCA_019456655.1		1	SAMN20254259	ATCC 19340	Mycolicibacterium diernhoferi
GCA_022370755.2		1	SAMN20254253	ATCC 700504	Mycolicibacterium goodii
GCA_019645835.1		1	SAMN20254262	JCM 12374	Mycolicibacterium holsaticum DSM 44478 = JCM 12374
GCA_019456675.1		3	SAMN20254255	JCM 16370	Mycolicibacterium pallens
GCA_022374875.3		3	SAMN20254267	JCM 16372	Mycolicibacterium rufum
GCA_019645875.1		1	SAMN20254268	ATCC 35796	Mycolicibacterium senegalense

SRA Data Details

Parameter	Value
Data volume, Gbases	170
Data volume, Mbytes	47619

Supplemental Content

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SRA
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Mycobacterium
Mycobacterium
Whole genome sequencing of non-tuberculosis mycobacteria type-strains

BioProject
BioProject Links for Nucleotide (Select 2076788772) (1)
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txid1777133[Organism] AND (latest[filter] AND all[filter] NOT ano... (1)
txid1777133[Organism] AND (latest[filter] AND all[filter] NOT anomalous[filter])
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Assembly
Ulva australis voucher UBC:A100147 elongation factor Tu (tufA) gene, partial cds...
Ulva australis voucher UBC:A100147 elongation factor Tu (tufA) gene, partial cds; chloroplast
gi|2728411083|gb|PP736040.1|

Nucleotide
Homo sapiens long intergenic non-protein coding RNA 2211 (LINC02211), long non-c...
Homo sapiens long intergenic non-protein coding RNA 2211 (LINC02211), long non-coding RNA
gi|1015809845|ref|NR_136209.1|

Nucleotide

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