freshwater sediment metagenome (ID 30127) - BioProject

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Accession: PRJNA30127 ID: 30127

freshwater sediment metagenome

Freshwater metagenome from Lake Washington (formaldehyde SIP enrichment)

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This project is a component of the Metagenome from Lake Washington

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4 additional projects are components of the Metagenome from Lake Washington.

DNA was collected from sediment from Lake Washington, Seattle, Washington (latitude: N47 38. More...

Accession	PRJNA30127
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	freshwater sediment metagenome[Taxonomy ID: 556182] unclassified sequences; metagenomes; ecological metagenomes; freshwater sediment metagenome
Publications	Kalyuzhnaya MG et al., "High-resolution metagenomics targets specific functional types in complex microbial communities.", Nat Biotechnol, 2008 Sep;26(9):1029-34
Submission	Registration date: 29-Aug-2008 - DOE Joint Genome Institute - JGI-PGF
NCBI Links	BLAST Metagenomics Book BLAST against environmental sequences
Locus Tag Prefix	LWFA

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	1
Publications
PubMed	1
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	BioSample	Taxonomy
GCA_000206325.1	Contig	ABSN00000000	SAMN02954293	freshwater sediment metagenome

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Metagenomics Book
Metagenomics Book
BLAST against environmental sequences
BLAST against environmental sequences

LinkOut to external resources

GOLD: Gp0050990 [Genomes On Line Database]
GOLD: Gp0050990
Genomes On Line Database
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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freshwater sediment metagenome
freshwater sediment metagenome
Freshwater metagenome from Lake Washington (formaldehyde SIP enrichment)

BioProject
BioProject Links for Nucleotide (Select 197440328) (1)
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Taxonomy Links for Nucleotide (Select 2076241668) (1)
Taxonomy
Freshwater sediment metagenome, whole genome shotgun sequencing project
Freshwater sediment metagenome, whole genome shotgun sequencing project
gi|1935580867|gb|JADDYB000000000.1| B010000000

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