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Accession: PRJNA627032 ID: 627032

22-year study of E. Coli O157:H7 feedlot Isolates

Over 22-years, E. coli O157:H7 isolates were collected from the USMARC ARS USDA (Clay Center, NE) feedlot annually via the feces and frozen in purified stock. More...
AccessionPRJNA627032
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 20-Apr-2020
United State Department of Agriculture
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)210
WGS master146
Genomic DNA64
SRA Experiments192
Protein Sequences120000
Other datasets
BioSample169
Assembly169
Assembly details:
Assembly levelNumber of Assemblies
23
146
169
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_019795115.1ContigJAILZA000000000
SAMN20849340
FLT_1999A
GCA_019795095.1ContigJAILYZ000000000
SAMN20849341
FLT_1999E
GCA_016770855.1ContigJABEKN000000000
SAMN14784087
FLT_1997C
GCA_016770835.1ContigJABEKO000000000
SAMN14784086
FLT_1997B
GCA_016770795.1ContigJABEKM000000000
SAMN14784088
FLT_1997D
GCA_016770805.1ContigJABEKL000000000
SAMN14784089
FLT_1997E
GCA_016770735.1ContigJABEKF000000000
SAMN14784095
FLT_1998A
GCA_016770775.1ContigJABEKK000000000
SAMN14784090
FLT_1997F
GCA_016770745.1ContigJABEKJ000000000
SAMN14784091
FLT_1997G
GCA_016770705.1ContigJABEKI000000000
SAMN14784092
FLT_1997H
GCA_016770695.1ContigJABEKH000000000
SAMN14784093
FLT_1997I
GCA_016770675.1ContigJABEKG000000000
SAMN14784094
FLT_1997J
GCA_016770625.1ContigJABEKD000000000
SAMN14784097
FLT_1998C
GCA_016770635.1ContigJABEKE000000000
SAMN14784096
FLT_1998B
GCA_016770615.1ContigJABEKC000000000
SAMN14784098
FLT_1998D
GCA_016770585.1ContigJABEKA000000000
SAMN14784100
FLT_1998G
GCA_016770555.1ContigJABEJZ000000000
SAMN14784101
FLT_1998H
GCA_016770575.1ContigJABEKB000000000
SAMN14784099
FLT_1998E
GCA_016770535.1ContigJABEJY000000000
SAMN14784102
FLT_1998I
GCA_016770515.1ContigJABEJV000000000
SAMN14784105
FLT_1999C
GCA_016770485.1ContigJABEJW000000000
SAMN14784104
FLT_1999B
GCA_016770475.1ContigJABEJX000000000
SAMN14784103
FLT_1998J
GCA_016770435.1ContigJABEJT000000000
SAMN14784107
FLT_1999F
GCA_016770445.1ContigJABEJU000000000
SAMN14784106
FLT_1999D
GCA_016770415.1ContigJABEJS000000000
SAMN14784108
FLT_1999H
GCA_016770385.1ContigJABEJQ000000000
SAMN14784110
FLT_1999J
GCA_016770375.1ContigJABEJR000000000
SAMN14784109
FLT_1999I
GCA_016770355.1ContigJABEJP000000000
SAMN14784111
FLT_2000B
GCA_016770335.1ContigJABEJO000000000
SAMN14784112
FLT_2000C
GCA_016770305.1ContigJABEJN000000000
SAMN14784113
FLT_2000D
GCA_016770295.1ContigJABEJM000000000
SAMN14784114
FLT_2000E
GCA_016770275.1ContigJABEJL000000000
SAMN14784115
FLT_2000F
GCA_016770255.1ContigJABEJK000000000
SAMN14784116
FLT_2000G
GCA_016770225.1ContigJABEJJ000000000
SAMN14784117
FLT_2000H
GCA_016770215.1ContigJABEJI000000000
SAMN14784118
FLT_2000I
GCA_016770195.1ContigJABEJH000000000
SAMN14784119
FLT_2000J
GCA_016770175.1ContigJABEJG000000000
SAMN14784120
FLT_2001B
GCA_016770155.1ContigJABEJF000000000
SAMN14784121
FLT_2001C
GCA_016770135.1ContigJABEJE000000000
SAMN14784122
FLT_2001D
GCA_016770115.1ContigJABEJC000000000
SAMN14784124
FLT_2001F
GCA_016770095.1ContigJABEJD000000000
SAMN14784123
FLT_2001E
GCA_016770075.1ContigJABEJA000000000
SAMN14784126
FLT_2001H
GCA_016770055.1ContigJABEJB000000000
SAMN14784125
FLT_2001G
GCA_016770035.1ContigJABEIZ000000000
SAMN14784127
FLT_2002A
GCA_016770015.1ContigJABEIY000000000
SAMN14784128
FLT_2002B
GCA_016769995.1ContigJABEIX000000000
SAMN14784129
FLT_2002C
GCA_016769975.1ContigJABEIW000000000
SAMN14784130
FLT_2004A
GCA_016769945.1ContigJABEIU000000000
SAMN14784132
FLT_2004C
GCA_016769935.1ContigJABEIV000000000
SAMN14784131
FLT_2004B
GCA_016769905.1ContigJABEIT000000000
SAMN14784133
FLT_2004D
GCA_016769895.1ContigJABEIR000000000
SAMN14784135
FLT_2004F
GCA_016769875.1ContigJABEIS000000000
SAMN14784134
FLT_2004E
GCA_016769855.1ContigJABEIQ000000000
SAMN14784136
FLT_2004H
GCA_016769835.1ContigJABEIP000000000
SAMN14784137
FLT_2004I
GCA_016769815.1ContigJABEIO000000000
SAMN14784138
FLT_2004J
GCA_016769795.1ContigJABEIN000000000
SAMN14784139
FLT_2005A
GCA_016769775.1ContigJABEIM000000000
SAMN14784140
FLT_2005B
GCA_016769755.1ContigJABEIL000000000
SAMN14784141
FLT_2005C
GCA_016769735.1ContigJABEIK000000000
SAMN14784142
FLT_2005D
GCA_016769715.1ContigJABEIJ000000000
SAMN14784143
FLT_2005E
GCA_016769695.1ContigJABEII000000000
SAMN14784144
FLT_2005G
GCA_016769665.1ContigJABEIH000000000
SAMN14784145
FLT_2006B
GCA_016769655.1ContigJABEIG000000000
SAMN14784146
FLT_2006C
GCA_016769635.1ContigJABEIE000000000
SAMN14784148
FLT_2006E
GCA_016769615.1ContigJABEIF000000000
SAMN14784147
FLT_2006D
GCA_016769595.1ContigJABEID000000000
SAMN14784149
FLT_2006F
GCA_016769565.1ContigJABEIB000000000
SAMN14784151
FLT_2006H
GCA_016769555.1ContigJABEIC000000000
SAMN14784150
FLT_2006G
GCA_016769535.1ContigJABEIA000000000
SAMN14784152
FLT_2007A
GCA_016769505.1ContigJABEHZ000000000
SAMN14784153
FLT_2007B
GCA_016769475.1ContigJABEHW000000000
SAMN14784156
FLT_2007E
GCA_016769465.1ContigJABEHX000000000
SAMN14784155
FLT_2007D
GCA_016769455.1ContigJABEHY000000000
SAMN14784154
FLT_2007C
GCA_016769435.1ContigJABEHV000000000
SAMN14784157
FLT_2007F
GCA_016769415.1ContigJABEHU000000000
SAMN14784158
FLT_2007H
GCA_016769365.1ContigJABEHR000000000
SAMN14784161
FLT_2008A
GCA_016769345.1ContigJABEHQ000000000
SAMN14784162
FLT_2008B
GCA_016769355.1ContigJABEHT000000000
SAMN14784159
FLT_2007I
GCA_016769335.1ContigJABEHS000000000
SAMN14784160
FLT_2007J
GCA_016769315.1ContigJABEHP000000000
SAMN14784163
FLT_2008C
GCA_016769265.1ContigJABEHN000000000
SAMN14784165
FLT_2008F
GCA_016769255.1ContigJABEHO000000000
SAMN14784164
FLT_2008E
GCA_016769245.1ContigJABEHM000000000
SAMN14784166
FLT_2008G
GCA_016769235.1ContigJABEHL000000000
SAMN14784167
FLT_2008H
GCA_016769215.1ContigJABEHK000000000
SAMN14784168
FLT_2008I
GCA_016769185.1ContigJABEHJ000000000
SAMN14784169
FLT_2008J
GCA_016769175.1ContigJABEHI000000000
SAMN14784170
FLT_2009A
GCA_016769155.1ContigJABEHH000000000
SAMN14784171
FLT_2009C
GCA_016769115.1ContigJABEHF000000000
SAMN14784173
FLT_2009F
GCA_016769125.1ContigJABEHG000000000
SAMN14784172
FLT_2009E
GCA_016769095.1ContigJABEHE000000000
SAMN14784174
FLT_2009G
GCA_016769075.1ContigJABEHD000000000
SAMN14784175
FLT_2009H
GCA_016769035.1ContigJABEHC000000000
SAMN14784176
FLT_2010B
GCA_016769045.1ContigJABEHB000000000
SAMN14784177
FLT_2010C
GCA_016769015.1ContigJABEGZ000000000
SAMN14784179
FLT_2010F
GCA_016768985.1ContigJABEHA000000000
SAMN14784178
FLT_2010D
GCA_016768975.1ContigJABEGY000000000
SAMN14784180
FLT_2010H
GCA_016768955.1ContigJABEGX000000000
SAMN14784181
FLT_2010J
GCA_016768935.1ContigJABEGV000000000
SAMN14784183
FLT_2011C
GCA_016768905.1ContigJABEGU000000000
SAMN14784184
FLT_2011D
GCA_016768895.1ContigJABEGW000000000
SAMN14784182
FLT_2011A
GCA_016768875.1ContigJABEGT000000000
SAMN14784185
FLT_2011F
GCA_016768855.1ContigJABEGS000000000
SAMN14784186
FLT_2011G
GCA_016768835.1ContigJABEGR000000000
SAMN14784187
FLT_2011H
GCA_016768815.1ContigJABEGQ000000000
SAMN14784188
FLT_2011I
GCA_016768795.1ContigJABEGM000000000
SAMN14784192
FLT_2012C
GCA_016768775.1ContigJABEGK000000000
SAMN14784194
FLT_2012E
GCA_016768755.1ContigJABEGN000000000
SAMN14784191
FLT_2012B
GCA_016768735.1ContigJABEGI000000000
SAMN14784196
FLT_2012G
GCA_016768715.1ContigJABEGF000000000
SAMN14784199
FLT_2013A
GCA_016768685.1ContigJABEGD000000000
SAMN14784201
FLT_2013D
GCA_016768675.1ContigJABEGE000000000
SAMN14784200
FLT_2013C
GCA_016768645.1ContigJABEGB000000000
SAMN14784203
FLT_2014A
GCA_016768635.1ContigJABEGC000000000
SAMN14784202
FLT_2013E
GCA_016768615.1ContigJABEFZ000000000
SAMN14784205
FLT_2014C
GCA_016768595.1ContigJABEFY000000000
SAMN14784206
FLT_2014D
GCA_016768575.1ContigJABEFX000000000
SAMN14784207
FLT_2014E
GCA_016768555.1ContigJABEFV000000000
SAMN14784209
FLT_2014G
GCA_016768525.1ContigJABEFR000000000
SAMN14784213
FLT_2017F
GCA_016768515.1ContigJABEFW000000000
SAMN14784208
FLT_2014F
GCA_016768495.1ContigJABEFS000000000
SAMN14784212
FLT_2017E
GCA_016768475.1ContigJABEFQ000000000
SAMN14784214
FLT_2017G
GCA_016768455.1ContigJABEFO000000000
SAMN14784216
FLT_2018B
GCA_016768415.1ContigJABEFM000000000
SAMN14784218
FLT_2018F
GCA_016768425.1ContigJABEFN000000000
SAMN14784217
FLT_2018D
GCA_016768375.1ContigJABEFI000000000
SAMN14784222
FLT_2019C
GCA_016768385.1ContigJABEFL000000000
SAMN14784219
FLT_2018G
GCA_016768355.1ContigJABEFH000000000
SAMN14784223
FLT_2019D
GCA_016768325.1ContigJABEFE000000000
SAMN14784226
FLT_2019G
GCA_016768315.1ContigJABEFB000000000
SAMN14784229
FLT_2019J
GCA_016768295.1ContigJABEFG000000000
SAMN14784224
FLT_2019E
GCA_016768275.1ContigJABEFD000000000
SAMN14784227
FLT_2019H
GCA_016768255.1ContigJABEGP000000000
SAMN14784189
FLT_2011J
GCA_016768235.1ContigJABEGO000000000
SAMN14784190
FLT_2012A
GCA_016768215.1ContigJABEGL000000000
SAMN14784193
FLT_2012D
GCA_016768195.1ContigJABEGJ000000000
SAMN14784195
FLT_2012F
GCA_016768175.1ContigJABEGG000000000
SAMN14784198
FLT_2012J
GCA_016768155.1ContigJABEGH000000000
SAMN14784197
FLT_2012H
GCA_016768135.1ContigJABEFU000000000
SAMN14784210
FLT_2017A
GCA_016768115.1ContigJABEGA000000000
SAMN14784204
FLT_2014B
GCA_016768095.1ContigJABEFT000000000
SAMN14784211
FLT_2017B
GCA_016768065.1ContigJABEFJ000000000
SAMN14784221
FLT_2019A
GCA_016768055.1ContigJABEFC000000000
SAMN14784228
FLT_2019I
GCA_016768025.1ContigJABEFF000000000
SAMN14784225
FLT_2019F
GCA_016768015.1ContigJABEFP000000000
SAMN14784215
FLT_2018A
GCA_016767995.1ContigJABEFK000000000
SAMN14784220
FLT_2018H
GCA_016834635.1Complete genomeSAMN14648873
FLT_2010G
GCA_016835095.1Complete genomeSAMN14648852
FLT_1998F
GCA_016835075.1Complete genomeSAMN14648851
FLT_1997A
GCA_016835055.1Complete genomeSAMN14648854
FLT_2000A
GCA_016835035.1Complete genomeSAMN14648853
FLT_1999G
GCA_016835015.1Complete genomeSAMN14648857
FLT_2004G
GCA_016834995.1Complete genomeSAMN14648856
FLT_2002D
GCA_016834975.1Complete genomeSAMN14648855
FLT_2001A
GCA_016834955.1Complete genomeSAMN14648858
FLT_2005F
GCA_016834935.1Complete genomeSAMN14648859
FLT_2006A
GCA_016834915.1Complete genomeSAMN14648860
FLT_2006I
GCA_016834895.1Complete genomeSAMN14648861
FLT_2007G
GCA_016834875.1Complete genomeSAMN14648862
FLT_2008D
GCA_016834855.1Complete genomeSAMN14648863
FLT_2009B
GCA_016834835.1Complete genomeSAMN14648864
FLT_2009D
GCA_016834815.1Complete genomeSAMN14648866
FLT_2010E
GCA_016834795.1Complete genomeSAMN14648865
FLT_2010A
GCA_016834775.1Complete genomeSAMN14648867
FLT_2010I
GCA_016834755.1Complete genomeSAMN14648868
FLT_2011B
GCA_016834735.1Complete genomeSAMN14648869
FLT_2011E
GCA_016834715.1Complete genomeSAMN14648870
FLT_2012I
GCA_016834695.1Complete genomeSAMN14648871
FLT_2018C
GCA_016834675.1Complete genomeSAMN14648872
FLT_2019B
SRA Data Details
ParameterValue
Data volume, Gbases113
Data volume, Mbytes47292

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