Warning: The NCBI web site requires JavaScript to function. more...

BioProject

Organizing biological data

Result Filters

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Nucleotide

Accession: PRJNA590717 ID: 590717

phyllosphere metagenome

Genome-resolved metagenomics to study the prevalence of co-infections and intraspecific heterogeneity among pathogen metapopulations within tomato and pepper fields

Metagenomics of tomato and pepper bacterial spot disease

Accession	PRJNA590717
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	phyllosphere metagenome[Taxonomy ID: 662107] unclassified sequences; metagenomes; organismal metagenomes; phyllosphere metagenome
Publications	Newberry E et al., "Genome-resolved metagenomics to study co-occurrence patterns and intraspecific heterogeneity among plant pathogen metapopulations.", Environ Microbiol, 2020 Jul;22(7):2693-2708
Submission	Registration date: 15-Feb-2020 Auburn University
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	17
SRA Experiments	15
Publications
PubMed	1
Other datasets
BioSample	31
Assembly	17

Assembly details:

Assembly level

Number of Assemblies

Contig

17
17

Assembly	Level	WGS	BioSample	Isolate	Taxonomy
GCA_010677205.1		JAAGZF000000000	SAMN13337576	Weeds_Lee_18a	Pantoea ananatis
GCA_010686925.1		JAAGYX000000000	SAMN13337574	Xe_Pep_Lee_18a	Xanthomonas euvesicatoria
GCA_010682085.1		JAAGYW000000000	SAMN13337573	Xe_Pep_Lee_17a	Xanthomonas euvesicatoria
GCA_010682145.1		JAAGYV000000000	SAMN13337572	Xe_Pep_Tuscaloosa_18b	Xanthomonas euvesicatoria
GCA_010677275.1		JAAGZA000000000	SAMN13337578	Xp_Tom_Macon_18a	Xanthomonas perforans
GCA_010677265.1		JAAGZC000000000	SAMN13337581	Xp_Tom _Baldwin_17a	Xanthomonas perforans
GCA_010686895.1		JAAGZB000000000	SAMN13337580	Xp_Tom_Macon_18b	Xanthomonas perforans
GCA_010686885.1		JAAGYZ000000000	SAMN13337577	Xp_Tom_Macon_17a	Xanthomonas perforans
GCA_010686865.1		JAAGZD000000000	SAMN13337582	Xp_Tom_Etowah_18a	Xanthomonas perforans
GCA_010686845.1		JAAGYY000000000	SAMN13337575	Xp_Tom_Lee_18a	Xanthomonas perforans
GCA_010686825.1		JAAGZE000000000	SAMN13337583	Xp_Tom_DeKalb_18a	Xanthomonas perforans
GCA_010686975.1		JAAGYS000000000	SAMN13337569	Xp_Tom_Tuscaloosa_17a	Xanthomonas perforans
GCA_010686965.1		JAAGYT000000000	SAMN13337570	Xp_Tom_Tuscaloosa_17b	Xanthomonas perforans
GCA_010686935.1		JAAGYU000000000	SAMN13337571	Xp_Tom_Tuscaloosa_18b	Xanthomonas perforans
GCA_011800885.1		JAAIGG000000000	SAMN13974130	-	phyllosphere metagenome
GCA_011800935.1		JAAIGE0000000000	SAMN13974128	-	phyllosphere metagenome
GCA_011800905.1		JAAIGF000000000	SAMN13974129	-	phyllosphere metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	171
Data volume, Mbytes	73445

Supplemental Content

Related information

Assembly
All related Assemblies
BioSample
All related BioSamples
Genome
Related Genomes
Nucleotide
Related Nucleotide entry
PubMed
PubMed Links
SRA
All related SRA Experiments
Taxonomy
Taxonomy Links
WGS master
Link to WGS master record(s)

Recent activity

Clear Turn Off Turn On

phyllosphere metagenome
phyllosphere metagenome
Genome-resolved metagenomics to study the prevalence of co-infections and intraspecific heterogeneity among pathogen metapopulations within tomato and pepper fields

BioProject
BioProject Links for Nucleotide (Select 1826847082) (1)
BioProject
BioProject Links for Nucleotide (Select 1558352319) (1)
BioProject
Assembly for Nucleotide (Select 2677131746) (1)
Assembly

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

You are here: NCBI