ID 497209 - BioProject

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Accession: PRJNA497209 ID: 497209

French clinical Campylobacter jejuni strains isolated between 2011 and 2016 used in a source attribution study

198 French clinical isolates of Campylobacter jejuni isolated between 2011 and 2016 were sequenced to perform source attribution based on a method using 15 host-segregating markers

Accession	PRJNA497209
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 17-Oct-2018 CHU Pellegrin
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4269
WGS master	198
SRA Experiments	198
Protein Sequences	328879
Other datasets
BioSample	198
Assembly	198

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

193
5
198

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_010996695.1	RDJC00000000	SAMN10250863	2014_1209H	Campylobacter jejuni
GCA_010996775.1	RDJG00000000	SAMN10250859	2014_0950H	Campylobacter jejuni
GCA_010996745.1	RDJD00000000	SAMN10250862	2014_1146H	Campylobacter jejuni
GCA_010996735.1	RDJE00000000	SAMN10250861	2014_1017H	Campylobacter jejuni
GCA_010996925.1	RDJN00000000	SAMN10250852	2014_0549H	Campylobacter jejuni
GCA_010996875.1	RDJK00000000	SAMN10250855	2014_0763H	Campylobacter jejuni
GCA_010996855.1	RDJI00000000	SAMN10250857	2014_0889H	Campylobacter jejuni
GCA_010996815.1	RDJH00000000	SAMN10250858	2014_0940	Campylobacter jejuni
GCA_010996805.1	RDJJ00000000	SAMN10250856	2014_0886H	Campylobacter jejuni
GCA_010996795.1	RDJF00000000	SAMN10250860	2014_1005H	Campylobacter jejuni
GCA_010997175.1	RDJZ00000000	SAMN10250840	2014_0241H	Campylobacter jejuni
GCA_010997155.1	RDJY00000000	SAMN10250841	2014_0244H	Campylobacter jejuni
GCA_010997105.1	RDJV00000000	SAMN10250844	2014_0279H	Campylobacter jejuni
GCA_010997115.1	RDJX00000000	SAMN10250842	2014_0255H	Campylobacter jejuni
GCA_010997095.1	RDJW00000000	SAMN10250843	2014_0259	Campylobacter jejuni
GCA_010997075.1	RDJU00000000	SAMN10250845	2014_0289H	Campylobacter jejuni
GCA_010997055.1	RDJT00000000	SAMN10250846	2014_0358H	Campylobacter jejuni
GCA_010997015.1	RDJS00000000	SAMN10250847	2014_0404H	Campylobacter jejuni
GCA_010997005.1	RDJR00000000	SAMN10250848	2014_0422H	Campylobacter jejuni
GCA_010996995.1	RDJQ00000000	SAMN10250849	2014_0438H	Campylobacter jejuni
GCA_010996975.1	RDJP00000000	SAMN10250850	2014_0450H	Campylobacter jejuni
GCA_010996945.1	RDJO00000000	SAMN10250851	2014_0548H	Campylobacter jejuni
GCA_010996905.1	RDJM00000000	SAMN10250853	2014_0598H	Campylobacter jejuni
GCA_010996895.1	RDJL00000000	SAMN10250854	2014_0748H	Campylobacter jejuni
GCA_010996685.1	RDJB00000000	SAMN10250864	2014_1220H	Campylobacter jejuni
GCA_010996675.1	RDJA00000000	SAMN10250865	2014_1299H	Campylobacter jejuni
GCA_010996645.1	RDIY00000000	SAMN10250867	2014_2734	Campylobacter jejuni
GCA_010996635.1	RDIZ00000000	SAMN10250866	2014_1323	Campylobacter jejuni
GCA_010996605.1	RDIX00000000	SAMN10250868	2014_2802	Campylobacter jejuni
GCA_010996595.1	RDIW00000000	SAMN10250869	2014_2838	Campylobacter jejuni
GCA_010996565.1	RDIV00000000	SAMN10250870	2014_3537	Campylobacter jejuni
GCA_010996545.1	RDIU00000000	SAMN10250871	2014_3583	Campylobacter jejuni
GCA_010996535.1	RDIT00000000	SAMN10250872	2015_0003H	Campylobacter jejuni
GCA_010996495.1	RDIR00000000	SAMN10250874	2015_0050H	Campylobacter jejuni
GCA_010996505.1	RDIS00000000	SAMN10250873	2015_0048H	Campylobacter jejuni
GCA_010996465.1	RDIQ00000000	SAMN10250875	2015_0061H	Campylobacter jejuni
GCA_010996445.1	RDIP00000000	SAMN10250876	2015_0063H	Campylobacter jejuni
GCA_010996435.1	RDIO00000000	SAMN10250877	2015_0068H	Campylobacter jejuni
GCA_010996395.1	RDIM00000000	SAMN10250879	2015_0204H	Campylobacter jejuni
GCA_010996385.1	RDIK00000000	SAMN10250881	2015_0345H	Campylobacter jejuni
GCA_010996375.1	RDIN00000000	SAMN10250878	2015_0109H	Campylobacter jejuni
GCA_010996355.1	RDIL00000000	SAMN10250880	2015_0334H	Campylobacter jejuni
GCA_010996335.1	RDIJ00000000	SAMN10250882	2015_0374H	Campylobacter jejuni
GCA_010996305.1	RDII00000000	SAMN10250883	2015_0450H	Campylobacter jejuni
GCA_010996275.1	RDIH00000000	SAMN10250884	2015_0505H	Campylobacter jejuni
GCA_010996255.1	RDIE00000000	SAMN10250887	2015_0685H	Campylobacter jejuni
GCA_010996265.1	RDIG00000000	SAMN10250885	2015_0518H	Campylobacter jejuni
GCA_010996235.1	RDIF00000000	SAMN10250886	2015_0612	Campylobacter jejuni
GCA_010998585.1	RDMS00000000	SAMN10250769	2011_0171	Campylobacter jejuni
GCA_010998545.1	RDMP00000000	SAMN10250772	2011_0286H	Campylobacter jejuni
GCA_010998555.1	RDMQ00000000	SAMN10250771	2011_0243H	Campylobacter jejuni
GCA_010998535.1	RDMR00000000	SAMN10250770	2011_0198H	Campylobacter jejuni
GCA_010998455.1	RDMM00000000	SAMN10250775	2011_0661H	Campylobacter jejuni
GCA_010998435.1	RDML00000000	SAMN10250776	2011_0951H	Campylobacter jejuni
GCA_010998445.1	RDMJ00000000	SAMN10250778	2011_1183H	Campylobacter jejuni
GCA_010998415.1	RDMK00000000	SAMN10250777	2011_1151H	Campylobacter jejuni
GCA_010998515.1	RDMO00000000	SAMN10250773	2011_0580	Campylobacter jejuni
GCA_010998495.1	RDMN00000000	SAMN10250774	2011_0584H	Campylobacter jejuni
GCA_010998395.1	RDMI00000000	SAMN10250779	2011_1200H	Campylobacter jejuni
GCA_010998335.1	RDME00000000	SAMN10250783	2011_1512H	Campylobacter jejuni
GCA_010998325.1	RDMG00000000	SAMN10250781	2011_1400H	Campylobacter jejuni
GCA_010998315.1	RDMF00000000	SAMN10250782	2011_1433H	Campylobacter jejuni
GCA_010998355.1	RDMH00000000	SAMN10250780	2011_1374H	Campylobacter jejuni
GCA_010998295.1	RDMD00000000	SAMN10250784	2011_2753	Campylobacter jejuni
GCA_010998255.1	RDMB00000000	SAMN10250786	2012_0018H	Campylobacter jejuni
GCA_010998235.1	RDMA00000000	SAMN10250787	2012_0068H	Campylobacter jejuni
GCA_010998225.1	RDMC00000000	SAMN10250785	2011_3711	Campylobacter jejuni
GCA_010998215.1	RDLZ00000000	SAMN10250788	2012_0090H	Campylobacter jejuni
GCA_010998195.1	RDLU00000000	SAMN10250793	2012_0783H	Campylobacter jejuni
GCA_010998155.1	RDLW00000000	SAMN10250791	2012_0379H	Campylobacter jejuni
GCA_010998135.1	RDLY00000000	SAMN10250789	2012_0215H	Campylobacter jejuni
GCA_010998145.1	RDLX00000000	SAMN10250790	2012_0262H	Campylobacter jejuni
GCA_010998115.1	RDLV00000000	SAMN10250792	2012_0667	Campylobacter jejuni
GCA_010998075.1	RDLT00000000	SAMN10250794	2012_0995H	Campylobacter jejuni
GCA_010998055.1	RDLR00000000	SAMN10250796	2012_1030H	Campylobacter jejuni
GCA_010998035.1	RDLQ00000000	SAMN10250797	2012_1069H	Campylobacter jejuni
GCA_010998015.1	RDLS00000000	SAMN10250795	2012_1022H	Campylobacter jejuni
GCA_010998025.1	RDLP00000000	SAMN10250798	2012_1110H	Campylobacter jejuni
GCA_010997985.1	RDLO00000000	SAMN10250799	2012_1131H	Campylobacter jejuni
GCA_010997965.1	RDLN00000000	SAMN10250800	2012_1279H	Campylobacter jejuni
GCA_010997955.1	RDLM00000000	SAMN10250801	2012_1281H	Campylobacter jejuni
GCA_010997915.1	RDLK00000000	SAMN10250803	2012_3001	Campylobacter jejuni
GCA_010997925.1	RDLL00000000	SAMN10250802	2012_1416	Campylobacter jejuni
GCA_010997855.1	RDLI00000000	SAMN10250805	2013_0052	Campylobacter jejuni
GCA_010997825.1	RDLG00000000	SAMN10250807	2013_0127H	Campylobacter jejuni
GCA_010997815.1	RDLF00000000	SAMN10250808	2013_0185H	Campylobacter jejuni
GCA_010997795.1	RDLE00000000	SAMN10250809	2013_0208H	Campylobacter jejuni
GCA_010997745.1	RDLD00000000	SAMN10250810	2013_0286H	Campylobacter jejuni
GCA_010997735.1	RDLB00000000	SAMN10250812	2013_0420H	Campylobacter jejuni
GCA_010997725.1	RDLC00000000	SAMN10250811	2013_0345H	Campylobacter jejuni
GCA_010997715.1	RDLA00000000	SAMN10250813	2013_0442H	Campylobacter jejuni
GCA_010997895.1	RDLJ00000000	SAMN10250804	2013_0016H	Campylobacter jejuni
GCA_010997865.1	RDLH00000000	SAMN10250806	2013_0125H	Campylobacter jejuni
GCA_010997695.1	RDKZ00000000	SAMN10250814	2013_0449H	Campylobacter jejuni
GCA_010997645.1	RDKY00000000	SAMN10250815	2013_0465H	Campylobacter jejuni
GCA_010997625.1	RDKV00000000	SAMN10250818	2013_0624H	Campylobacter jejuni
GCA_010997605.1	RDKX00000000	SAMN10250816	2013_0479H	Campylobacter jejuni
GCA_010997615.1	RDKW00000000	SAMN10250817	2013_0529H	Campylobacter jejuni
GCA_010997595.1	RDKU00000000	SAMN10250819	2013_0695H	Campylobacter jejuni
GCA_010997535.1	RDKT00000000	SAMN10250820	2013_0724H	Campylobacter jejuni
GCA_010997525.1	RDKR00000000	SAMN10250822	2013_0775H	Campylobacter jejuni
GCA_010997515.1	RDKQ00000000	SAMN10250823	2013_0886H	Campylobacter jejuni
GCA_010997505.1	RDKP00000000	SAMN10250824	2013_0914H	Campylobacter jejuni
GCA_010997495.1	RDKS00000000	SAMN10250821	2013_0743H	Campylobacter jejuni
GCA_010997435.1	RDKK00000000	SAMN10250829	2013_1056H	Campylobacter jejuni
GCA_010997445.1	RDKN00000000	SAMN10250826	2013_0936H	Campylobacter jejuni
GCA_010997415.1	RDKL00000000	SAMN10250828	2013_0951H	Campylobacter jejuni
GCA_010997405.1	RDKM00000000	SAMN10250827	2013_0949H	Campylobacter jejuni
GCA_010997395.1	RDKO00000000	SAMN10250825	2013_0915H	Campylobacter jejuni
GCA_010997335.1	RDKH00000000	SAMN10250832	2013_1183H	Campylobacter jejuni
GCA_010997325.1	RDKJ00000000	SAMN10250830	2013_1105H	Campylobacter jejuni
GCA_010997305.1	RDKG00000000	SAMN10250833	2013_1249H	Campylobacter jejuni
GCA_010997295.1	RDKF00000000	SAMN10250834	2013_1268	Campylobacter jejuni
GCA_010997315.1	RDKI00000000	SAMN10250831	2013_1176H	Campylobacter jejuni
GCA_010997235.1	RDKE00000000	SAMN10250835	2013_2151	Campylobacter jejuni
GCA_010997195.1	RDKA00000000	SAMN10250839	2014_0118H	Campylobacter jejuni
GCA_010997205.1	RDKD00000000	SAMN10250836	2013_3388	Campylobacter jejuni
GCA_010997215.1	RDKC00000000	SAMN10250837	2014_0051H	Campylobacter jejuni
GCA_010997225.1	RDKB00000000	SAMN10250838	2014_0106H	Campylobacter jejuni
GCA_010994695.1	RDFG00000000	SAMN10250964	2016_3451	Campylobacter jejuni
GCA_010994655.1	RDFF00000000	SAMN10250965	2016_3452	Campylobacter jejuni
GCA_010994645.1	RDFE00000000	SAMN10250966	2016_3453	Campylobacter jejuni
GCA_010994765.1	RDFJ00000000	SAMN10250961	2016_3443	Campylobacter jejuni
GCA_010994715.1	RDFH00000000	SAMN10250963	2016_3449	Campylobacter jejuni
GCA_010994725.1	RDFI00000000	SAMN10250962	2016_3446	Campylobacter jejuni
GCA_010994955.1	RDFS00000000	SAMN10250952	2016_3432	Campylobacter jejuni
GCA_010995075.1	RDFY00000000	SAMN10250946	2016_3422	Campylobacter jejuni
GCA_010994935.1	RDFP00000000	SAMN10250955	2016_3437	Campylobacter jejuni
GCA_010994895.1	RDFQ00000000	SAMN10250954	2016_3434	Campylobacter jejuni
GCA_010994875.1	RDFO00000000	SAMN10250956	2016_3438	Campylobacter jejuni
GCA_010994885.1	RDFR00000000	SAMN10250953	2016_3433	Campylobacter jejuni
GCA_010994855.1	RDFN00000000	SAMN10250957	2016_3439	Campylobacter jejuni
GCA_010994815.1	RDFL00000000	SAMN10250959	2016_3441	Campylobacter jejuni
GCA_010994805.1	RDFK00000000	SAMN10250960	2016_3442	Campylobacter jejuni
GCA_010994795.1	RDFM00000000	SAMN10250958	2016_3440	Campylobacter jejuni
GCA_010995135.1	RDGA00000000	SAMN10250944	2016_3420	Campylobacter jejuni
GCA_010995125.1	RDGB00000000	SAMN10250943	2016_3419	Campylobacter jejuni
GCA_010995115.1	RDGC00000000	SAMN10250942	2016_3415	Campylobacter jejuni
GCA_010995035.1	RDFX00000000	SAMN10250947	2016_3423	Campylobacter jejuni
GCA_010995025.1	RDFW00000000	SAMN10250948	2016_3427	Campylobacter jejuni
GCA_010995015.1	RDFT00000000	SAMN10250951	2016_3431	Campylobacter jejuni
GCA_010995095.1	RDFZ00000000	SAMN10250945	2016_3421	Campylobacter jejuni
GCA_010994995.1	RDFU00000000	SAMN10250950	2016_3430	Campylobacter jejuni
GCA_010994975.1	RDFV00000000	SAMN10250949	2016_3429	Campylobacter jejuni
GCA_010996215.1	RDID00000000	SAMN10250888	2015_0737H	Campylobacter jejuni
GCA_010996155.1	RDIC00000000	SAMN10250889	2015_0757H	Campylobacter jejuni
GCA_010996145.1	RDIB00000000	SAMN10250890	2015_0769H	Campylobacter jejuni
GCA_010996175.1	RDIA00000000	SAMN10250891	2015_0795H	Campylobacter jejuni
GCA_010996135.1	RDHZ00000000	SAMN10250892	2015_0808H	Campylobacter jejuni
GCA_010996115.1	RDHY00000000	SAMN10250893	2015_0824H	Campylobacter jejuni
GCA_010996065.1	RDHX00000000	SAMN10250894	2015_0859H	Campylobacter jejuni
GCA_010996075.1	RDHW00000000	SAMN10250895	2015_0959H	Campylobacter jejuni
GCA_010996045.1	RDHU00000000	SAMN10250897	2015_1053H	Campylobacter jejuni
GCA_010996035.1	RDHV00000000	SAMN10250896	2015_0981H	Campylobacter jejuni
GCA_010996015.1	RDHT00000000	SAMN10250898	2015_1056H	Campylobacter jejuni
GCA_010995935.1	RDHO00000000	SAMN10250903	2015_1979	Campylobacter jejuni
GCA_010995925.1	RDHP00000000	SAMN10250902	2015_1831	Campylobacter jejuni
GCA_010995915.1	RDHQ00000000	SAMN10250901	2015_1581	Campylobacter jejuni
GCA_010995985.1	RDHS00000000	SAMN10250899	2015_1064H	Campylobacter jejuni
GCA_010995975.1	RDHR00000000	SAMN10250900	2015_1368	Campylobacter jejuni
GCA_010995885.1	RDHN00000000	SAMN10250904	2016_0006H	Campylobacter jejuni
GCA_010995875.1	RDHM00000000	SAMN10250905	2016_0018H	Campylobacter jejuni
GCA_010995825.1	RDHL00000000	SAMN10250906	2016_0036H	Campylobacter jejuni
GCA_010995815.1	RDHJ00000000	SAMN10250908	2016_0148	Campylobacter jejuni
GCA_010995775.1	RDHI00000000	SAMN10250909	2016_0183H	Campylobacter jejuni
GCA_010995785.1	RDHH00000000	SAMN10250910	2016_0232H	Campylobacter jejuni
GCA_010995745.1	RDHF00000000	SAMN10250912	2016_0488H	Campylobacter jejuni
GCA_010995735.1	RDHG00000000	SAMN10250911	2016_0335H	Campylobacter jejuni
GCA_010995855.1	RDHK00000000	SAMN10250907	2016_0062H	Campylobacter jejuni
GCA_010995685.1	RDHD00000000	SAMN10250914	2016_0605H	Campylobacter jejuni
GCA_010995675.1	RDHC00000000	SAMN10250915	2016_0609	Campylobacter jejuni
GCA_010995645.1	RDHA00000000	SAMN10250917	2016_0638H	Campylobacter jejuni
GCA_010995635.1	RDHB00000000	SAMN10250916	2016_0619H	Campylobacter jejuni
GCA_010995615.1	RDGZ00000000	SAMN10250918	2016_0750H	Campylobacter jejuni
GCA_010995575.1	RDGX00000000	SAMN10250920	2016_0753H	Campylobacter jejuni
GCA_010995555.1	RDGV00000000	SAMN10250923	2016_0810H	Campylobacter jejuni
GCA_010995545.1	RDGW00000000	SAMN10250921	2016_0771H	Campylobacter jejuni
GCA_010995535.1	RDGY00000000	SAMN10250919	2016_0751H	Campylobacter jejuni
GCA_010995715.1	RDHE00000000	SAMN10250913	2016_0589H	Campylobacter jejuni
GCA_010995515.1	RDGU00000000	SAMN10250924	2016_0817H	Campylobacter jejuni
GCA_010995475.1	RDGR00000000	SAMN10250927	2016_0891H	Campylobacter jejuni
GCA_010995465.1	RDGT00000000	SAMN10250925	2016_0857	Campylobacter jejuni
GCA_010995455.1	RDGS00000000	SAMN10250926	2016_0873H	Campylobacter jejuni
GCA_010995315.1	RDGK00000000	SAMN10250934	2016_1464	Campylobacter jejuni
GCA_010995325.1	RDGM00000000	SAMN10250932	2016_1070H	Campylobacter jejuni
GCA_010995365.1	RDGO00000000	SAMN10250930	2016_1009	Campylobacter jejuni
GCA_010995355.1	RDGN00000000	SAMN10250931	2016_1064H	Campylobacter jejuni
GCA_010995345.1	RDGL00000000	SAMN10250933	2016_1437	Campylobacter jejuni
GCA_010995275.1	RDGJ00000000	SAMN10250935	2016_1465	Campylobacter jejuni
GCA_010995285.1	RDGI00000000	SAMN10250936	2016_2202	Campylobacter jejuni
GCA_010995225.1	RDGH00000000	SAMN10250937	2016_2420	Campylobacter jejuni
GCA_010995235.1	RDGG00000000	SAMN10250938	2016_2698	Campylobacter jejuni
GCA_010995215.1	RDGF00000000	SAMN10250939	2016_3084	Campylobacter jejuni
GCA_010995425.1	RDGP00000000	SAMN10250929	2016_0998	Campylobacter jejuni
GCA_010995415.1	RDGQ00000000	SAMN10250928	2016_0900H	Campylobacter jejuni
GCA_010995195.1	RDGE00000000	SAMN10250940	2016_3144	Campylobacter jejuni
GCA_010995175.1	RDGD00000000	SAMN10250941	2016_3412	Campylobacter jejuni
GCA_011033105.1	RDTF00000000	SAMN10250922	2016_0777H	Campylobacter jejuni

SRA Data Details

Parameter	Value
Data volume, Gbases	289
Data volume, Tbytes	0.12

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French clinical Campylobacter jejuni strains isolated between 2011 and 2016 used in a source attribution study

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