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Accession: PRJNA514285 ID: 514285

Listeria species

GenomeTrakr Project: New York State Department of Agriculture and Markets (NYAG)

See Genome Information for Listeria monocytogenes
Whole-genome sequencing of pure-cultured Listeria monocytogenes as part of the New York State Department of Agriculture and Markets surveillance effort for both the US Food and Drug Administration's (FDA) GenomeTrakr network and Centers for Disease Control and Prevention (CDC) PulseNet network whole genome sequencing (WGS) surveillance efforts for the rapid detection and traceback of foodborne pathogens.
AccessionPRJNA514285
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismListeria[Taxonomy ID: 1637]
Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria
SubmissionRegistration date: 27-Mar-2019
FDA Center for Food Safety and Applied Nutrition
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)1327
SRA Experiments1334
Other datasets
BioSample1334
Assembly1327
Assembly details:
Assembly levelNumber of Assemblies
1327
1327
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_014947525.1ContigAAWQRN000000000SAMN16435815
20B10283-2
GCA_014947385.1ContigAAWQRG000000000SAMN16435816
20B10283-10
GCA_014521425.1ContigAAVYYU000000000SAMN16086313
07B09780N-6
GCA_014508545.1ContigAAVYCV000000000SAMN16086322
07B08904L-6
GCA_014508505.1ContigAAVYCW000000000SAMN16086324
07B04975H-1
GCA_014510105.1ContigAAVYFX000000000SAMN16086404
07B06048N-1
GCA_014510905.1ContigAAVYFZ000000000SAMN16086386
07B09446O-4
GCA_014506905.1ContigAAVXZS000000000SAMN16086479
08B01449M-1
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07B06367M-1
GCA_014506725.1ContigAAVXZU000000000SAMN16086482
08B01723I-1
GCA_014504695.1ContigAAVXTP000000000SAMN16086387
08B01956H-1
GCA_014502465.1ContigAAVXRX000000000SAMN16086309
07B06044N-1
GCA_014502515.1ContigAAVXRZ000000000SAMN16086323
08B02171M-1
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07B09446M-1
GCA_014502445.1ContigAAVXRY000000000SAMN16086316
08B02581I-6
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08B02581G-1
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08B01956F-1
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07B06044G-1
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08B02489I-1
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07B04975B-6
GCA_014502325.1ContigAAVXRW000000000SAMN16086308
08B02581F-1
GCA_014502305.1ContigAAVXRP000000000SAMN16086391
07B04975C-6
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07B09780F-1
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07B04975G-1
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07B04975K-6
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07B06359J-1
GCA_014502965.1ContigAAVXSU000000000SAMN16086396
07B09780L-6
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08B02247I-1
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08B01723G-1
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07B06367K-1
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08B01450N-1
GCA_014502895.1ContigAAVXSW000000000SAMN16086311
08B02171G-1
GCA_014502875.1ContigAAVXST000000000SAMN16086401
07B08904K-4
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08B01946I-1
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07B06359I-6
GCA_014499105.1ContigAAVXLV000000000SAMN16086307
08B01956G-6
GCA_014499085.1ContigAAVXLW000000000SAMN16086317
07B10222L-9
GCA_014502775.1ContigAAVXSK000000000SAMN16086318
07B06359F-1
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07B06367J-1
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07B10724E-6
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07B04979L-1
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08B01723M-1
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07B04975E-6
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08B01946N-1
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07B06367I-1
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07B10724F-1
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07B04979M-1
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08B01956I-1
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07B04975I-1
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07B05380M-6
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21B00181-6
GCA_016723525.1ContigAAYTQS000000000SAMN17385051
21B00181-5
GCA_020998175.1ContigABEAXE000000000SAMN23457198
06B03299G-8
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21B14350-6
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06B03305J-10
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21B13801Y-6
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06B03305J-9
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21B13625-6
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06B03305J-8
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21B13801Y-1
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21B13625-5
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06B03302J-3
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06B03299I-9
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06B03305J-3
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06B03305J-7
GCA_021226675.1ContigABEION000000000SAMN24171440
06B03308D-3
GCA_021226915.1ContigABEIOL000000000SAMN24171434
06B03305J-6
GCA_019890795.1ContigABCHRT000000000SAMN21220906
21B09781P-3
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21B09781G-6
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21B09785-1
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21B09787-5
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21B09781G-5
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21B09781T-8
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21B09784-5
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21B09785-10
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21B09781P-9
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21B09781T-1
GCA_019887925.1ContigABCHMP000000000SAMN21220915
21B09784-9
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21B09787-6
GCA_020474165.1ContigABDGFG000000000SAMN18616550
06B00637J-7
GCA_020407385.1ContigABDDWM000000000SAMN22160585
06B02949C-6
GCA_020407315.1ContigABDDWQ000000000SAMN22160578
06B02575D-4
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06B02949C-2
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06B02949C-7
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06B02949C-9
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06B02873E-4
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21B11226-6
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06B02635J-3
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06B02949C-5
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21B11226-8
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06B02873E-3
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GCA_020401365.1ContigABDDVH000000000SAMN22160595
06B02635J-2
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06B02949C-8
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06B02949C-4
GCA_020401185.1ContigABDDVD000000000SAMN22160581
06B02873E-6
GCA_020772875.1ContigABDSEM000000000SAMN22865841
21B12173T-6
GCA_020772015.1ContigABDSCS000000000SAMN22865831
06B02949I-3
GCA_020771995.1ContigABDSCQ000000000SAMN22865830
21B12173S-1
GCA_020771955.1ContigABDSCR000000000SAMN22865820
06B03229D-4
GCA_020771975.1ContigABDSCP000000000SAMN22865834
06B02949I-2
GCA_020771935.1ContigABDSCN000000000SAMN22865825
06B02949G-4
GCA_020771915.1ContigABDSCO000000000SAMN22865815
06B03229D-3
GCA_020771895.1ContigABDSCM000000000SAMN22865848
06B02949I-6
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06B02949I-8
GCA_020773015.1ContigABDSET000000000SAMN22865822
06B02949I-9
GCA_020772995.1ContigABDSEP000000000SAMN22865846
21B12173P-5
GCA_020772975.1ContigABDSES000000000SAMN22865824
06B02949G-6
GCA_020772955.1ContigABDSEQ000000000SAMN22865826
06B02949I-10
GCA_020772935.1ContigABDSER000000000SAMN22865833
06B02949I-4
GCA_020772915.1ContigABDSEO000000000SAMN22865823
06B02949G-5
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21B12173P-10
GCA_020773635.1ContigABDSFX000000000SAMN22865850
06B02949G-2
GCA_020773855.1ContigABDSGH000000000SAMN22865827
06B02949C-10
GCA_020774595.1ContigABDSHS000000000SAMN22865849
21B12173T-5
GCA_020774535.1ContigABDSHR000000000SAMN22865832
21B12173S-7
GCA_020774615.1ContigABDSHU000000000SAMN22865829
06B02949I-7
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21B13477K-1
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21B13477N-8
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21B13477N-1
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21B13477C-9
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21B13477E-6
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06B03299G-3
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06B03299G-10
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21B13477K-6
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06B03299G-5
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06B03299G-4
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06B03299G-9
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21B13477E-8
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21B13477C-2
GCA_020987845.1ContigABEAPW000000000SAMN23457186
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06B03299I-6
GCA_017280675.1ContigAAZJKU000000000SAMN16086315
08B02247E-1
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06B02040D-9
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21B04075-5
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06B02372D-2
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06B01958G-4
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21B04323-6
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21B04401-10
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GCA_007462155.1ContigAAIAHH000000000SAMN12108771
19B04920-6
GCA_007462315.1ContigAAIAHO000000000SAMN12078028
19B05683J-7
GCA_007462075.1ContigAAIAHG000000000SAMN12108792
19B04345-7
GCA_007468975.1ContigAAIAUF000000000SAMN12286920
19B06518-7
GCA_007468955.1ContigAAIAUJ000000000SAMN12286909
19B06518-5
GCA_007466835.1ContigAAIARX000000000SAMN12056375
19B05440-3
GCA_008341365.1ContigAAKFFC000000000SAMN12684714
19B08530-2
GCA_008340845.1ContigAAKFDI000000000SAMN12684842
19B08592-5
GCA_008340825.1ContigAAKFDX000000000SAMN12684899
07B04613I-10
GCA_008340805.1ContigAAKFDT000000000SAMN12684871
07B04613H-10
GCA_008340785.1ContigAAKFDU000000000SAMN12684872
19B08592-8
GCA_008340725.1ContigAAKFDQ000000000SAMN12684874
07B04613F-5
GCA_008340685.1ContigAAKFDL000000000SAMN12684812
07B04613B-1
GCA_008340595.1ContigAAKFCX000000000SAMN12684759
19B08530-6
GCA_008340585.1ContigAAKFDJ000000000SAMN12684810
07B04613E-1
GCA_008340925.1ContigAAKFDW000000000SAMN12684985
07B04613L-2
GCA_008340385.1ContigAAKFCR000000000SAMN12684193
07B03661O-1
GCA_008340345.1ContigAAKFCL000000000SAMN12684196
07B03884M-1
GCA_008339465.1ContigAAKFDD000000000SAMN12684765
07B04360I-1
GCA_008339305.1ContigAAKFDF000000000SAMN12684761
07B04360M-1
GCA_008339285.1ContigAAKFDG000000000SAMN12684762
07B04613N-6
GCA_008277525.1ContigAAKBGA000000000SAMN12642333
19B08042-7
GCA_008277505.1ContigAAKBFZ000000000SAMN12642354
07B03168N-6
GCA_008277545.1ContigAAKBGG000000000SAMN12642348
07B03233M-6
GCA_008277485.1ContigAAKBGF000000000SAMN12642350
07B03512I-1
GCA_008277465.1ContigAAKBGI000000000SAMN12642346
07B02257G-1
GCA_008277445.1ContigAAKBGK000000000SAMN12642335
07B03512F-1
GCA_008277245.1ContigAAKBHE000000000SAMN12642338
07B03512E-1
GCA_008277205.1ContigAAKBHD000000000SAMN12642291
07B02537G-6
GCA_008277185.1ContigAAKBHB000000000SAMN12642292
07B03512C-1
GCA_008276885.1ContigAAKBGD000000000SAMN12642356
07B02257F-1
GCA_008276745.1ContigAAKBGC000000000SAMN12642332
07B02257E-6
GCA_008276545.1ContigAAKBFB000000000SAMN12642336
07B02257H-1
GCA_008276525.1ContigAAKBFF000000000SAMN12642345
07B03233I-1
GCA_008276655.1ContigAAKBFL000000000SAMN12642352
07B02781I-1
GCA_008276645.1ContigAAKBFS000000000SAMN12642147
19B08042-4
GCA_008275945.1ContigAAKBHP000000000SAMN12642343
07B03512J-1
GCA_008224885.1ContigAAJXXU000000000SAMN12548129
07B01996K-1
GCA_008224905.1ContigAAJXXP000000000SAMN12548131
07B01996E-1
GCA_008224845.1ContigAAJXXT000000000SAMN12548135
07B02163F-1
GCA_008224825.1ContigAAJXXR000000000SAMN12548136
07B02164F-1
GCA_008224805.1ContigAAJXXC000000000SAMN12547998
07B01920H-1
GCA_008224785.1ContigAAJXXD000000000SAMN12547997
07B01996D-1
GCA_008225165.1ContigAAJXXY000000000SAMN12548132
07B01997F-1
GCA_008225225.1ContigAAJXXV000000000SAMN12548133
07B01920K-1
GCA_008223505.1ContigAAJXUE000000000SAMN12547590
19B07544-3
GCA_008221365.1ContigAAJXUD000000000SAMN12547587
19B07544-6
GCA_008221505.1ContigAAJXUH000000000SAMN12547585
07B01996F-1
GCA_008221205.1ContigAAJXUA000000000SAMN12547582
07B01996H-1
GCA_008221125.1ContigAAJXUI000000000SAMN12547589
07B02164H-1
GCA_008221285.1ContigAAJXUJ000000000SAMN12547595
07B01996G-1
GCA_004533565.1ContigAAARTG000000000SAMN11148751
19B01482D-6
GCA_004532005.1ContigAAARTI000000000SAMN11148754
19B01573-7
GCA_004531365.1ContigAAARUA000000000SAMN11191625
19B01573-3
GCA_004549385.1ContigAAASXC000000000SAMN11191616
19B01482L-8
GCA_004548545.1ContigAAASVP000000000SAMN11149011
19B01482L-6
GCA_004547145.1ContigAAASVV000000000SAMN11149015
19B01482D-5
GCA_004413345.1ContigAAAJKK000000000SAMN10880982
07B01920F-1
GCA_004413245.1ContigAAAJKP000000000SAMN10880989
19B00780-9
GCA_004413165.1ContigAAAJKB000000000SAMN10839683
06B06418F-1
GCA_004413055.1ContigAAAJJU000000000SAMN10839206
06B06674H-6
GCA_004474365.1ContigAAANWG000000000SAMN10880981
06B06826D-1
GCA_004474325.1ContigAAANWH000000000SAMN10880985
06B06969F-6
GCA_004474305.1ContigAAANWM000000000SAMN10880990
06B06826E-1
GCA_004474285.1ContigAAANWJ000000000SAMN10880988
06B07131E-1
GCA_004474665.1ContigAAANWP000000000SAMN10880987
06B07131C-1
GCA_004474645.1ContigAAANWO000000000SAMN10880986
06B07043C-1
GCA_004474625.1ContigAAANWK000000000SAMN10880983
06B07131H-1
GCA_004474605.1ContigAAANWI000000000SAMN10880980
07B01920E-1
GCA_004474585.1ContigAAANWL000000000SAMN10880991
19B00780-1
GCA_004472945.1ContigAAANTM000000000SAMN10839672
06B06114G-1
GCA_004472905.1ContigAAANTL000000000SAMN10839482
06B06114I-1
GCA_004472925.1ContigAAANTK000000000SAMN10839848
06B06674G-6
GCA_004472865.1ContigAAANTJ000000000SAMN10839486
06B06674E-6
GCA_004472225.1ContigAAANTB000000000SAMN10839228
06B06114J-6
GCA_004472145.1ContigAAANTE000000000SAMN10839266
06B06614E-6
GCA_004472065.1ContigAAANTC000000000SAMN10839208
06B06614G-6
SRA Data Details
ParameterValue
Data volume, Gbases455
Data volume, Tbytes0.26

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