Pantoea (ID 563888) - BioProject

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Accession: PRJNA563888 ID: 563888

Pantoea

Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop

Bacterial leaf blight (BLB) of cotton is an important bacterial disease occurring in all cotton producing countries of the world, including Pakistan. More...

Accession	PRJNA563888
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Pantoea[Taxonomy ID: 53335] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea
Submission	Registration date: 21-Sep-2019 Cook Lab - University of California at Davis
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2144
WGS master	43
SRA Experiments	43
Protein Sequences	190079
Other datasets
BioSample	43
Assembly	43

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

32
11
43

Assembly	WGS	BioSample	Infraspecies Id	Taxonomy
GCA_008632075.1	VWVM00000000	SAMN12692236	B_8	Candidatus Pantoea gossypiicola
GCA_008632105.1	VWVO00000000	SAMN12692234	B_10	Pantoea sp. B_10
GCA_008632095.1	VWVN00000000	SAMN12692235	B_2	Pantoea sp. B_2
GCA_008632015.1	VWVL00000000	SAMN12692237	B_9	Pantoea sp. B_9
GCA_008632025.1	VWVK00000000	SAMN12692238	Bo_10	Pantoea sp. Bo_10
GCA_008632005.1	VWVJ00000000	SAMN12692239	Bo_11	Pantoea sp. Bo_11
GCA_008631995.1	VWVI00000000	SAMN12692240	Bo_13	Pantoea sp. Bo_13
GCA_008631975.1	VWVH00000000	SAMN12692241	Bo_14	Pantoea sp. Bo_14
GCA_008631935.1	VWVG00000000	SAMN12692242	Bo_19	Pantoea sp. Bo_19
GCA_008631925.1	VWVF00000000	SAMN12692243	Bo_2	Pantoea sp. Bo_2
GCA_008631905.1	VWVE00000000	SAMN12692244	Bo_21	Pantoea sp. Bo_21
GCA_008631895.1	VWVD00000000	SAMN12692245	Bo_3	Pantoea sp. Bo_3
GCA_008631865.1	VWVC00000000	SAMN12692246	Bo_34a	Pantoea sp. Bo_34a
GCA_008631835.1	VWVB00000000	SAMN12692247	Bo_39	Pantoea sp. Bo_39
GCA_008631825.1	VWVA00000000	SAMN12692248	Bo_40	Pantoea sp. Bo_40
GCA_008631815.1	VWUZ00000000	SAMN12692249	Bo_46	Pantoea sp. Bo_46
GCA_008631795.1	VWUY00000000	SAMN12692250	Bo_5	Pantoea sp. Bo_5
GCA_008631755.1	VWUX00000000	SAMN12692251	Bo_7	Pantoea sp. Bo_7
GCA_008631735.1	VWUW00000000	SAMN12692252	FN_2b	Pantoea sp. FN_2b
GCA_008631725.1	VWUV00000000	SAMN12692253	F_11	Pantoea sp. F_11
GCA_008631715.1	VWUU00000000	SAMN12692254	F_12	Pantoea sp. F_12
GCA_008631685.1	VWUT00000000	SAMN12692255	F_14	Pantoea sp. F_14
GCA_008631665.1	VWUS00000000	SAMN12692256	F_15	Pantoea sp. F_15
GCA_008631645.1	VWUR00000000	SAMN12692257	F_16	Pantoea sp. F_16
GCA_008631635.1	VWUQ00000000	SAMN12692258	F_17	Pantoea sp. F_17
GCA_008631615.1	VWUP00000000	SAMN12692259	F_18	Pantoea sp. F_18
GCA_008631595.1	VWUO00000000	SAMN12692260	F_5	Pantoea sp. F_5
GCA_008631565.1	VWUN00000000	SAMN12692261	F_7	Pantoea sp. F_7
GCA_008631555.1	VWUM00000000	SAMN12692262	M_1	Pantoea sp. M_1
GCA_008631515.1	VWUL00000000	SAMN12692263	M_10	Pantoea sp. M_10
GCA_008631505.1	VWUK00000000	SAMN12692264	M_3	Pantoea sp. M_3
GCA_008631475.1	VWUJ00000000	SAMN12692265	M_4	Pantoea sp. M_4
GCA_008631495.1	VWUI00000000	SAMN12692266	M_5	Pantoea sp. M_5
GCA_008631445.1	VWUH00000000	SAMN12692267	M_6	Pantoea sp. M_6
GCA_008631425.1	VWUG00000000	SAMN12692268	M_8	Pantoea sp. M_8
GCA_008631385.1	VWUF00000000	SAMN12692269	M_9	Pantoea sp. M_9
GCA_008631415.1	VWUE00000000	SAMN12692270	VH_16	Pantoea sp. VH_16
GCA_008631375.1	VWUD00000000	SAMN12692271	VH_18	Pantoea sp. VH_18
GCA_008631345.1	VWUC00000000	SAMN12692272	VH_24	Pantoea sp. VH_24
GCA_008631335.1	VWUB00000000	SAMN12692273	VH_25	Pantoea sp. VH_25
GCA_008631285.1	VWUA00000000	SAMN12692274	VH_3	Pantoea sp. VH_3
GCA_008631295.1	VWTZ00000000	SAMN12692275	VH_4	Pantoea sp. VH_4
GCA_008631275.1	VWTY00000000	SAMN12692276	VH_8	Pantoea sp. VH_8

SRA Data Details

Parameter	Value
Data volume, Gbases	49
Data volume, Mbytes	19989

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Pantoea

Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop

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