soda lake metagenome (ID 377096) - BioProject

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Accession: PRJNA377096 ID: 377096

soda lake metagenome

Soda lake innocuated bioreactors

Bioreactors were inoculated with microbial mats from alkaline soda lakes. 16S rRNA amplicon libraries were generated from multiple time points.

Accession	PRJNA377096
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	soda lake metagenome[Taxonomy ID: 1627878] unclassified sequences; metagenomes; ecological metagenomes; soda lake metagenome
Publications (total 3) Less...	Ataeian M et al., "Ecological Interactions of Cyanobacteria and Heterotrophs Enhances the Robustness of Cyanobacterial Consortium for Carbon Sequestration.", Front Microbiol, 2022;13:780346 More... Ataeian M et al., "Ecological Interactions of Cyanobacteria and Heterotrophs Enhances the Robustness of Cyanobacterial Consortium for Carbon Sequestration.", Front Microbiol, 2022;13:780346 Zorz JK et al., "A shared core microbiome in soda lakes separated by large distances.", Nat Commun, 2019 Sep 17;10(1):4230 Sharp CE et al., "Robust, high-productivity phototrophic carbon capture at high pH and alkalinity using natural microbial communities.", Biotechnol Biofuels, 2017;10:84 Less...
Submission	Registration date: 30-Jul-2019 University of Calgary
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	22222
WGS master	180
Genomic DNA	1
SRA Experiments	288
Protein Sequences	287281
Publications
PubMed	3
PMC	3
Other datasets
BioSample	560
Assembly	181

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
180
181

Assembly	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_007692425.1	RECG00000000		SAMN10237378	DLM2.Bin120	Acholeplasmataceae bacterium
GCA_007694145.1	RECF00000000		SAMN10237377	DLM2.Bin112	Acholeplasmatales bacterium
GCA_020832495.1	JAFIEP000000000		SAMN17266179	coassembly_bin.36	Acidimicrobiia bacterium
GCA_022565695.1	JAIUME000000000		SAMN21419671	PBR18_bin07	Alcanivorax sp.
GCA_022565475.1	JAIUMR000000000		SAMN21419684	PBR18_bin40	Aliidiomarina sp.
GCA_020832185.1	JAFIFE000000000		SAMN17266194	coassembly_bin.25	Alkalibacterium sp.
GCA_020832145.1	JAFIFF000000000		SAMN17266195	Super_Day6_Bin.28	Alkalibacterium sp.
GCA_007692455.1	RECC00000000		SAMN10237346	LCM1.Bin64	Alkalibacterium sp.
GCA_007692495.1	REBZ00000000		SAMN10237347	LCM1.Bin51	Alkalicoccus sp.
GCA_022565655.1	JAIUMG000000000		SAMN21419673	PBR18_bin08A	Alkalimonas sp.
GCA_020831935.1	JAFIFR000000000		SAMN17266207	Super_Day4_Bin.20	Alkalimonas sp.
GCA_020831925.1	JAFIFQ000000000		SAMN17266206	Super_Day4_Bin.14	Alkalimonas sp.
GCA_007693385.1	REDR00000000		SAMN10237399	GEM2.Bin39	Anaerolineaceae bacterium
GCA_007732545.1	REEX00000000		SAMN10237416	PLM2.Bin9	Arthrospira sp. PLM2.Bin9
GCA_007695305.1	REEA00000000		SAMN10237397	GEM2.Bin73	Bacteroidia bacterium
GCA_020832235.1	JAFIEZ000000000		SAMN17266189	coassembly_bin.10	Bacteroidota bacterium
GCA_007694165.1	RECE00000000		SAMN10237364	DLM2.Bin11	Bacteroidota bacterium
GCA_007693555.1	REDJ00000000		SAMN10237396	GEM2.Bin22	Bacteroidota bacterium
GCA_020832225.1	JAFIFA000000000		SAMN17266190	coassembly_bin.34	Balneolaceae bacterium
GCA_020832285.1	JAFIFB000000000		SAMN17266191	coassembly_bin.53	Balneolaceae bacterium
GCA_020832415.1	JAFIES000000000		SAMN17266182	coassembly_bin.57	Balneolaceae bacterium
GCA_022565735.1	JAIUMD000000000		SAMN21419670	PBR18_bin06A	Balneolaceae bacterium
GCA_007693395.1	REDS00000000		SAMN10237394	GEM2.Bin41	Balneolaceae bacterium
GCA_007693295.1	REDT00000000		SAMN10237393	GEM2.Bin42	Balneolaceae bacterium
GCA_007694095.1	RECI00000000		SAMN10237362	DLM2.Bin24	Balneolaceae bacterium
GCA_007694035.1	RECM00000000		SAMN10237367	DLM2.Bin41	Balneolaceae bacterium
GCA_007693825.1	RECX00000000		SAMN10237366	DLM2.Bin66	Balneolaceae bacterium
GCA_007693745.1	REDA00000000		SAMN10237363	DLM2.Bin75	Balneolaceae bacterium
GCA_022565535.1	JAIUMK000000000		SAMN21419677	PBR18_bin20	Balneolales bacterium
GCA_022565415.1	JAIUMT000000000		SAMN21419686	PBR18_bin42	Balneolales bacterium
GCA_022565805.1	JAIULZ000000000		SAMN21419666	PBR18_bin03A	Balneolales bacterium
GCA_020832405.1	JAFIET000000000		SAMN17266183	Super_Day4_Bin.10	Balneolales bacterium
GCA_022565795.1	JAIUMA000000000		SAMN21419667	PBR18_bin04A	Balneolia bacterium
GCA_020832465.1	JAFIER000000000		SAMN17266181	coassembly_bin.30	Bernardetiaceae bacterium
GCA_007693605.1	REDG00000000		SAMN10237372	DLM2.Bin98	Bradymonadales bacterium
GCA_007695245.1	REEE00000000		SAMN10237422	PLM2.Bin17	Candidatus Competibacteraceae bacterium
GCA_022565555.1	JAIUMN000000000		SAMN21419680	PBR18_bin29	Candidatus Gracilibacteria bacterium
GCA_020831705.1	JAFIGB000000000		SAMN17266217	coassembly_bin.29	Candidatus Sumerlaeia bacterium
GCA_007695095.1	REEL00000000		SAMN10237414	PLM2.Bin36	Chitinophagaceae bacterium
GCA_020831465.1	JAFIGI000000000		SAMN17266224	coassembly_bin.4	Chlamydiales bacterium
GCA_007760615.1	REBO00000000		SAMN10237357	LCM1.Bin2	Chlorophyta sp.
GCA_007693535.1	REDK00000000		SAMN10237403	GEM2.Bin25	Chromatiaceae bacterium
GCA_007693695.1	REDC00000000		SAMN10237375	DLM2.Bin80	Chromatiaceae bacterium
GCA_020831895.1	JAFIFS000000000		SAMN17266208	coassembly_bin.65	Chromatiales bacterium
GCA_020832135.1	JAFIFG000000000		SAMN17266196	coassembly_bin.26	Clostridiaceae bacterium
GCA_020832365.1	JAFIEX000000000		SAMN17266187	BM_Day4_Bin.3	Crocinitomicaceae bacterium
GCA_022565745.1	JAIUMB000000000		SAMN21419668	PBR18_bin05	Cryomorphaceae bacterium
GCA_020832345.1	JAFIEY000000000		SAMN17266188	coassembly_bin.80	Cryomorphaceae bacterium
GCA_007695365.1	REDV00000000		SAMN10237395	GEM2.Bin46	Cryomorphaceae bacterium
GCA_007694915.1	REEV00000000		SAMN10237415	PLM2.Bin73	Cyanobium sp. PLM2.Bin73
GCA_020832305.1	JAFIEV000000000		SAMN17266185	coassembly_bin.59	Cyclobacteriaceae bacterium
GCA_020832375.1	JAFIEW000000000		SAMN17266186	Super_Day4_Bin.12	Cyclobacteriaceae bacterium
GCA_022565445.1	JAIUMQ000000000		SAMN21419683	PBR18_bin39	Cyclobacteriaceae bacterium
GCA_022565315.1	JAIUMX000000000		SAMN21419690	PBR18_bin53	Cyclonatronum sp.
GCA_007693595.1	REDI00000000		SAMN10237400	GEM2.Bin11	Deltaproteobacteria bacterium
GCA_007693585.1	REDH00000000		SAMN10237401	GEM2.Bin10	Deltaproteobacteria bacterium
GCA_007693505.1	REDL00000000		SAMN10237402	GEM2.Bin26	Desulfovibrionales bacterium
GCA_022565505.1	JAIUMP000000000		SAMN21419682	PBR18_bin35	Ectothiorhodospiraceae bacterium
GCA_020831885.1	JAFIFU000000000		SAMN17266210	BM_Day10_Bin.33	Ectothiorhodospiraceae bacterium
GCA_020831845.1	JAFIFV000000000		SAMN17266211	coassembly_bin.70	Ectothiorhodospiraceae bacterium
GCA_020832205.1	JAFIFD000000000		SAMN17266193	coassembly_bin.71	Exiguobacterium sp.
GCA_022565635.1	JAIUMH000000000		SAMN21419674	PBR18_bin10A	Flavobacteriaceae bacterium
GCA_007693635.1	REDE00000000		SAMN10237361	DLM2.Bin87	Flavobacteriales bacterium
GCA_020832085.1	JAFIFJ000000000		SAMN17266199	coassembly_bin.6	Gammaproteobacteria bacterium
GCA_020832055.1	JAFIFL000000000		SAMN17266201	Super_Day12_Bin.14	Gammaproteobacteria bacterium
GCA_020832015.1	JAFIFM000000000		SAMN17266202	BM_Day4_Bin.16	Gammaproteobacteria bacterium
GCA_020832005.1	JAFIFN000000000		SAMN17266203	Super_Day8_Bin.28	Gammaproteobacteria bacterium
GCA_007693855.1	RECU00000000		SAMN10237374	DLM2.Bin61	Gammaproteobacteria bacterium
GCA_007694905.1	REEU00000000		SAMN10237419	PLM2.Bin7	Gammaproteobacteria bacterium
GCA_007694015.1	RECO00000000		SAMN10237359	DLM2.Bin45	Geminicoccaceae bacterium
GCA_007695225.1	REED00000000		SAMN10237423	PLM2.Bin16	Gemmatimonadales bacterium
GCA_007695195.1	REEG00000000		SAMN10237424	PLM2.Bin20	Gemmatimonadales bacterium
GCA_007692605.1	REBS00000000		SAMN10237354	LCM1.Bin31	Gemmatimonadales bacterium
GCA_007692665.1	REBP00000000		SAMN10237353	LCM1.Bin21	Gemmatimonadales bacterium
GCA_007692505.1	REBX00000000		SAMN10237355	LCM1.Bin49	Gemmatimonadales bacterium
GCA_007693955.1	RECR00000000		SAMN10237368	DLM2.Bin57	Gloeocapsa sp. DLM2.Bin57
GCA_022565665.1	JAIUMI000000000		SAMN21419675	PBR18_bin12	Glycocaulis sp.
GCA_007692645.1	REBR00000000		SAMN10237352	LCM1.Bin30	Halomonadaceae bacterium
GCA_020832045.1	JAFIFK000000000		SAMN17266200	coassembly_bin.77	Halomonas sp.
GCA_020832125.1	JAFIFI000000000		SAMN17266198	coassembly_bin.43	Halomonas sp.
GCA_007692655.1	REBQ00000000		SAMN10237348	LCM1.Bin22	Halomonas sp.
GCA_020832105.1	JAFIFH000000000		SAMN17266197	coassembly_bin.33	Idiomarina sp.
GCA_020831965.1	JAFIFP000000000		SAMN17266205	coassembly_bin.63	Idiomarina sp.
GCA_022565355.1	JAIUMU000000000		SAMN21419687	PBR18_bin46	Idiomarina sp.
GCA_007693335.1	REDU00000000		SAMN10237392	GEM2.Bin45	Ilumatobacter sp.
GCA_022565545.1	JAIUMJ000000000		SAMN21419676	PBR18_bin17	Kiritimatiellia bacterium
GCA_022565435.1	JAIUMS000000000		SAMN21419685	PBR18_bin41	Kiritimatiellia bacterium
GCA_020831865.1	JAFIFT000000000		SAMN17266209	coassembly_bin.13	Legionellaceae bacterium
GCA_007694125.1	RECH00000000		SAMN10237370	DLM2.Bin15	Leptolyngbya sp. DLM2.Bin15
GCA_007694115.1	RECJ00000000		SAMN10237371	DLM2.Bin27	Leptolyngbya sp. DLM2.Bin27
GCA_007692715.1	REBM00000000		SAMN10237344	LCM1.Bin17	Leptolyngbya sp. LCM1.Bin17
GCA_020831715.1	JAFIGA000000000		SAMN17266216	coassembly_bin.86	Leptospira sp.
GCA_020832325.1	JAFIEU000000000		SAMN17266184	coassembly_bin.35	Lunatimonas sp.
GCA_007695015.1	REEN00000000		SAMN10237411	PLM2.Bin38	Marinilabiliales bacterium
GCA_022565395.1	JAIUMV000000000		SAMN21419688	PBR18_bin50	Marinobacter sp.
GCA_020831825.1	JAFIFW000000000		SAMN17266212	coassembly_bin.73	Methylophaga sp.
GCA_007693615.1	REDF00000000		SAMN10237360	DLM2.Bin89	Micavibrio sp.
GCA_007692705.1	REBN00000000		SAMN10237343	LCM1.Bin19	Mongoliibacter sp.
GCA_022565615.1	JAIUMM000000000		SAMN21419679	PBR18_bin24	Nanoarchaeota archaeon
GCA_020832585.1	JAFIEL000000000		SAMN17266175	BM_Day12_Bin.9	Natronohydrobacter sp.
GCA_020832555.1	JAFIEM000000000		SAMN17266176	BM_Day8_Bin.11	Natronohydrobacter sp.
GCA_022565775.1	JAIUMC000000000		SAMN21419669	PBR18_bin05A	Natronospirillum sp.
GCA_007692565.1	REBT00000000		SAMN10237342	LCM1.Bin35	Nitriliruptor sp.
GCA_007693425.1	REDQ00000000		SAMN10237390	GEM2.Bin37	Nitriliruptor sp.
GCA_007693285.1	REDY00000000		SAMN10237391	GEM2.Bin56	Nitriliruptor sp.
GCA_020832455.1	JAFIEQ000000000		SAMN17266180	BM_Day6_Bin.7	Nitriliruptoraceae bacterium
GCA_007692755.1	REBL00000000		SAMN10237345	LCM1.Bin15	Nodularia sp. (in: cyanobacteria)
GCA_022565365.1	JAIUMW000000000		SAMN21419689	PBR18_bin52	Oceanicaulis sp.
GCA_020832645.1	JAFIEH000000000		SAMN17266171	coassembly_bin.9	Oceanicaulis sp.
GCA_020832735.1	JAFIEB000000000		SAMN17266165	coassembly_bin.1	Oceanicaulis sp.
GCA_007693685.1	REDB00000000		SAMN10237376	DLM2.Bin78	Oceanospirillales bacterium
GCA_020831485.1	JAFIGG000000000		SAMN17266222	Super_Day4_Bin.8	Opitutales bacterium
GCA_020831585.1	JAFIGE000000000		SAMN17266220	BM_Day8_Bin.4	Opitutales bacterium
GCA_020831525.1	JAFIGH000000000		SAMN17266223	Super_Day6_Bin.11	Opitutales bacterium
GCA_020831535.1	JAFIGF000000000		SAMN17266221	coassembly_bin.52	Opitutales bacterium
GCA_022565335.1	JAIUMY000000000		SAMN21419691	PBR18_bin56	Opitutales bacterium
GCA_022565675.1	JAIUMF000000000		SAMN21419672	PBR18_bin07A	Opitutales bacterium
GCA_020832705.1	JAFIEE000000000		SAMN17266168	Super_Day12_Bin.9	Paracoccaceae bacterium
GCA_020832655.1	JAFIEF000000000		SAMN17266169	Super_Day2_Bin.16	Paracoccaceae bacterium
GCA_020832575.1	JAFIEJ000000000		SAMN17266173	BM_Day10_Bin.16	Paracoccaceae bacterium
GCA_020832445.1	JAFIEO000000000		SAMN17266178	coassembly_bin.17	Paracoccaceae bacterium
GCA_020832725.1	JAFIEC000000000		SAMN17266166	coassembly_bin.23	Paracoccaceae bacterium
GCA_007693835.1	RECW00000000		SAMN10237358	DLM2.Bin65	Paracoccaceae bacterium
GCA_007694945.1	REER00000000		SAMN10237410	PLM2.Bin49	Paracoccaceae bacterium
GCA_007692585.1	REBU00000000		SAMN10237341	LCM1.Bin36	Paracoccaceae bacterium
GCA_007695345.1	REDZ00000000		SAMN10237389	GEM2.Bin58	Paracoccaceae bacterium
GCA_020832805.1	JAFIED000000000		SAMN17266167	coassembly_bin.62	Pararhodobacter sp.
GCA_020832545.1	JAFIEK000000000		SAMN17266174	BM_Day12_Bin.30	Pararhodobacter sp.
GCA_020832665.1	JAFIEG000000000		SAMN17266170	Super_Day2_Bin.31	Pararhodobacter sp.
GCA_020832215.1	JAFIFC000000000		SAMN17266192	BM_Day4_Bin.17	Phormidium sp. BM_Day4_Bin.17
GCA_007693465.1	REDN00000000		SAMN10237398	GEM2.Bin31	Phormidium sp. GEM2.Bin31
GCA_020386575.1		1	SAMN17928605	PBR-2020	Phormidium sp. PBR-2020
GCA_020831765.1	JAFIFY000000000		SAMN17266214	coassembly_bin.18	Phycisphaeraceae bacterium
GCA_007693965.1	RECQ00000000		SAMN10237379	DLM2.Bin55	Phycisphaeraceae bacterium
GCA_007693725.1	REDD00000000		SAMN10237383	DLM2.Bin81	Phycisphaeraceae bacterium
GCA_022565495.1	JAIUMO000000000		SAMN21419681	PBR18_bin34	Phycisphaerales bacterium
GCA_020831775.1	JAFIFZ000000000		SAMN17266215	coassembly_bin.61	Phycisphaerales bacterium
GCA_007693845.1	RECV00000000		SAMN10237380	DLM2.Bin64	Phycisphaerales bacterium
GCA_007693785.1	RECY00000000		SAMN10237381	DLM2.Bin69	Phycisphaerales bacterium
GCA_007693765.1	RECZ00000000		SAMN10237382	DLM2.Bin74	Phycisphaerales bacterium
GCA_007694925.1	REET00000000		SAMN10237425	PLM2.Bin57	Phycisphaerales bacterium
GCA_007694185.1	RECD00000000		SAMN10237384	DLM2.Bin10	Planctomycetaceae bacterium
GCA_007695205.1	REEF00000000		SAMN10237426	PLM2.Bin2	Planctomycetaceae bacterium
GCA_020831805.1	JAFIFX000000000		SAMN17266213	BM_Day4_Bin.20	Planctomycetota bacterium
GCA_007695355.1	REDX00000000		SAMN10237405	GEM2.Bin49	Planctomycetota bacterium
GCA_007693455.1	REDP00000000		SAMN10237404	GEM2.Bin36	Planctomycetota bacterium
GCA_007692485.1	REBY00000000		SAMN10237351	LCM1.Bin50	Pseudomonadaceae bacterium
GCA_007692545.1	REBV00000000		SAMN10237356	LCM1.Bin39	Puniceicoccaceae bacterium
GCA_007695295.1	REEB00000000		SAMN10237427	PLM2.Bin11	Puniceicoccaceae bacterium
GCA_007694935.1	REES00000000		SAMN10237409	PLM2.Bin51	Rhodospirillales bacterium
GCA_007695045.1	REEP00000000		SAMN10237408	PLM2.Bin41	Rhodospirillales bacterium
GCA_022565265.1	JAIUNA000000000		SAMN21419693	PBR18_bin58	Roseinatronobacter sp.
GCA_007694245.1	RECB00000000		SAMN10237340	LCM1.Bin54	Roseinatronobacter sp.
GCA_020832515.1	JAFIEN000000000		SAMN17266177	BM_Day8_Bin.38	Rubellimicrobium sp.
GCA_022565595.1	JAIUML000000000		SAMN21419678	PBR18_bin23	Saccharospirillum sp.
GCA_007693435.1	REDO00000000		SAMN10237388	GEM2.Bin33	Salinarimonadaceae bacterium
GCA_020832565.1	JAFIEI000000000		SAMN17266172	BM_Day12_Bin.15	Salinarimonas sp.
GCA_007695035.1	REEO00000000		SAMN10237413	PLM2.Bin40	Saprospirales bacterium
GCA_007695145.1	REEI00000000		SAMN10237412	PLM2.Bin24	Saprospirales bacterium
GCA_007693915.1	RECS00000000		SAMN10237365	DLM2.Bin58	Saprospirales bacterium
GCA_022565875.1	JAIULY000000000		SAMN21419665	PBR18_bin01	Schleiferiaceae bacterium
GCA_007695115.1	REEK00000000		SAMN10237417	PLM2.Bin26	Sphaerobacteraceae bacterium
GCA_007693945.1	RECP00000000		SAMN10237387	DLM2.Bin48	Spirochaetaceae bacterium
GCA_007694025.1	RECL00000000		SAMN10237385	DLM2.Bin35	Spirochaetaceae bacterium
GCA_007694005.1	RECN00000000		SAMN10237386	DLM2.Bin42	Spirochaetaceae bacterium
GCA_007695285.1	REEC00000000		SAMN10237428	PLM2.Bin13	Spirochaetaceae bacterium
GCA_007695175.1	REEH00000000		SAMN10237429	PLM2.Bin22	Spirochaetaceae bacterium
GCA_007695055.1	REEM00000000		SAMN10237430	PLM2.Bin37	Spirochaetaceae bacterium
GCA_007693325.1	REDW00000000		SAMN10237407	GEM2.Bin48	Spirochaetaceae bacterium
GCA_007693485.1	REDM00000000		SAMN10237406	GEM2.Bin30	Spirochaetaceae bacterium
GCA_007693875.1	RECT00000000		SAMN10237369	DLM2.Bin59	Spirulina sp. DLM2.Bin59
GCA_007692435.1	RECA00000000		SAMN10237350	LCM1.Bin52	Thioalkalivibrio sp.
GCA_007692535.1	REBW00000000		SAMN10237349	LCM1.Bin42	Thioalkalivibrio sp.
GCA_007695125.1	REEJ00000000		SAMN10237418	PLM2.Bin25	Trueperaceae bacterium
GCA_020831635.1	JAFIGC000000000		SAMN17266218	BM_Day0_Bin.15	Verrucomicrobiota bacterium
GCA_020831625.1	JAFIGD000000000		SAMN17266219	Super_Day4_Bin.15	Verrucomicrobiota bacterium
GCA_020831985.1	JAFIFO000000000		SAMN17266204	BM_Day4_Bin.27	Wenzhouxiangella sp.
GCA_022565295.1	JAIUMZ000000000		SAMN21419692	PBR18_bin57	Wenzhouxiangella sp.
GCA_007694055.1	RECK00000000		SAMN10237373	DLM2.Bin32	Wenzhouxiangella sp.
GCA_007694885.1	REEW00000000		SAMN10237421	PLM2.Bin80	Wenzhouxiangella sp.
GCA_007695005.1	REEQ00000000		SAMN10237420	PLM2.Bin43	Wenzhouxiangellaceae bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	239
Data volume, Tbytes	0.11

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soda lake metagenome

Soda lake innocuated bioreactors

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