groundwater metagenome (ID 414404) - BioProject

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Accession: PRJNA414404 ID: 414404

groundwater metagenome

Comano Thermal Spring metagenome

Whole shotgun metagenome from a therapeutic thermal spring water, extracted after filtration (at 0.22 um) from filters.

Accession	PRJNA414404
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	groundwater metagenome[Taxonomy ID: 717931] unclassified sequences; metagenomes; ecological metagenomes; groundwater metagenome
Publications	Pedron R et al., "Genomic and metagenomic insights into the microbial community of a thermal spring.", Microbiome, 2019 Jan 23;7(1):8
Grants	"Valorization of the biospecificity and the therapeutic properties of Comano thermal spring waters." (Grant ID /, G.B. Mattei Institute)
Submission	Registration date: 9-May-2019 University of Trento
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	14000
WGS master	102
SRA Experiments	8
Publications
PubMed	1
PMC	1
Other datasets
BioSample	106
Assembly	102

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

102
102

Assembly	WGS	BioSample	Infraspecies Id	Taxonomy
GCA_005503255.1	SCNA00000000	SAMN08712269	2SH	Bacillus sp. 2SH
GCA_005503015.1	SCOL00000000	SAMN08712306	E(2018)	Bacillus sp. E(2018)
GCA_005502515.1	SCOP00000000	SAMN08712310	H2N5002	Bacillus sp. H2N5002
GCA_005502845.1	SCMW00000000	SAMN08712265	2SA	Brevibacterium sp. 2SA
GCA_005503145.1	SCNV00000000	SAMN08712290	4M9327F10	Burkholderia sp. 4M9327F10
GCA_005503135.1	SCNW00000000	SAMN08712291	4M9327G5	Burkholderia sp. 4M9327G5
GCA_005502665.1	SCNX00000000	SAMN08712292	4NA327B6	Burkholderia sp. 4NA327B6
GCA_005503435.1	SCNY00000000	SAMN08712293	4NA327C10	Burkholderia sp. 4NA327C10
GCA_005502655.1	SCNZ00000000	SAMN08712294	4NA327C6	Burkholderia sp. 4NA327C6
GCA_005503085.1	SCOI00000000	SAMN08712303	C2	Burkholderiales bacterium C2
GCA_005239865.1	SBBC00000000	SAMN08774414	Bin_28_1_1	Candidatus Microgenomatus auricola
GCA_005239655.1	SBBP00000000	SAMN08774427	Bin_40	Candidatus Microgenomatus auricola
GCA_005240015.1	SBBV00000000	SAMN08774433	Bin_9_1	Candidatus Odyssella thessalonicensis
GCA_005239925.1	SBBA00000000	SAMN08774412	Bin_24_1	Candidatus Troglogloeales bacterium
GCA_005239745.1	SBBL00000000	SAMN08774423	Bin_34_1	Candidatus Troglogloeales bacterium
GCA_005239595.1	SBBT00000000	SAMN08774431	Bin_6_1_1	Candidatus Troglogloeales bacterium
GCA_005502685.1	SCNR00000000	SAMN08712286	3R27C2-B	Caulobacter sp. 3R27C2-B
GCA_005503445.1	SCOH00000000	SAMN08712302	B	Chitinivorax sp. B
GCA_005240105.1	SBAT00000000	SAMN08774405	Bin_14_1_1	Chloroflexota bacterium
GCA_005503635.1	SCNC00000000	SAMN08712271	2VB	Chryseobacterium sp. 2VB
GCA_005503725.1	SCMN00000000	SAMN08712256	2FD	Comamonadaceae bacterium 2FD
GCA_005503335.1	SCMQ00000000	SAMN08712259	2FH	Comamonadaceae bacterium 2FH
GCA_005502875.1	SCMV00000000	SAMN08712264	2PF	Comamonadaceae bacterium 2PF
GCA_005503065.1	SCOE00000000	SAMN08712299	ALPHA2B	Comamonadaceae bacterium ALPHA2B
GCA_005503625.1	SCMX00000000	SAMN08712266	2SB	Cupriavidus sp. 2SB
GCA_005503595.1	SCNE00000000	SAMN08712273	2VL	Enterobacter sp. 2VL
GCA_005240065.1	SBBG00000000	SAMN08774418	Bin_2_1_1	Gammaproteobacteria bacterium
GCA_005502615.1	SCOC00000000	SAMN08712297	ALPHA1B1	Gordonia sp. ALPHA1B1
GCA_005502605.1	SCOD00000000	SAMN08712298	ALPHA2A	Gordonia sp. ALPHA2A
GCA_005502535.1	SCON00000000	SAMN08712308	GAMMA	Gordonia sp. GAMMA
GCA_005502725.1	SCOR00000000	SAMN08712312	K	Gordonia terrae
GCA_005503365.1	SCML00000000	SAMN08712254	2FB	Hydrogenophaga sp. 2FB
GCA_005502825.1	SCNB00000000	SAMN08712270	2SI	Kocuria sp. 2SI
GCA_005503645.1	SCMS00000000	SAMN08712261	2PA	Lysobacteraceae bacterium 2PA
GCA_005502915.1	SCMT00000000	SAMN08712262	2PB	Lysobacteraceae bacterium 2PB
GCA_005503055.1	SCOX00000000	SAMN08712318	P	Lysobacteraceae bacterium P
GCA_005503535.1	SCNN00000000	SAMN08712282	3P27G6	Mesorhizobium comanense
GCA_005502435.1	SCOU00000000	SAMN08712315	L1B	Methylobacillus flagellatus
GCA_005239965.1	SBAV00000000	SAMN08774407	Bin_16_1	Methylobacter tundripaludum
GCA_005502455.1	SCOS00000000	SAMN08712313	L1A1	Methylobacterium sp. L1A1
GCA_005239995.1	SBAU00000000	SAMN08774406	Bin_15_1	Methylocystis sp.
GCA_005502775.1	SCNI00000000	SAMN08712277	3FA27C10	Microbacteriaceae bacterium 3FA27C10
GCA_005503235.1	SCNK00000000	SAMN08712279	3P27C6	Microbacteriaceae bacterium 3P27C6
GCA_005503155.1	SCNU00000000	SAMN08712289	3R27F9-B	Microbacteriaceae bacterium 3R27F9-B
GCA_005502445.1	SCPB00000000	SAMN08712322	X2B	Microbacteriaceae bacterium X2B
GCA_005502885.1	SCMR00000000	SAMN08712260	2FI	Microbacterium sp. 2FI
GCA_005503465.1	SCOB00000000	SAMN08712296	4NA327F11	Microbacterium sp. 4NA327F11
GCA_005502545.1	SCOG00000000	SAMN08712301	Beta	Microbacterium sp. Beta
GCA_005502335.1	SCOW00000000	SAMN08712317	O	Microbacterium sp. O
GCA_005240145.1	SBAS00000000	SAMN08774404	Bin_11_1	Nitrosomonadales bacterium
GCA_005240075.1	SBBF00000000	SAMN08774417	Bin_29_2_1	Nitrospira sp.
GCA_005239945.1	SBAY00000000	SAMN08774410	Bin_21_1	Nitrospira sp.
GCA_005239825.1	SBBE00000000	SAMN08774416	Bin_29_1	Nitrospira sp.
GCA_005240095.1	SBAX00000000	SAMN08774409	Bin_18_1	Phycisphaera mikurensis
GCA_005239585.1	SBBU00000000	SAMN08774432	Bin_8_1_1	Planctomycetaceae bacterium
GCA_005239675.1	SBBO00000000	SAMN08774426	Bin_37_8	Planctomycetales bacterium
GCA_005239725.1	SBBM00000000	SAMN08774424	Bin_37_1_1	Planctomycetales bacterium
GCA_005239935.1	SBAZ00000000	SAMN08774411	Bin_23_1_1	Planctomycetales bacterium
GCA_005239795.1	SBBH00000000	SAMN08774419	Bin_31	Planctomycetales bacterium
GCA_005503735.1	SCMO00000000	SAMN08712257	2FE	Pseudomonas sp. 2FE
GCA_005502935.1	SCMP00000000	SAMN08712258	2FG	Pseudomonas sp. 2FG
GCA_005503585.1	SCND00000000	SAMN08712272	2VD	Pseudomonas sp. 2VD
GCA_005503545.1	SCNO00000000	SAMN08712283	3PA37B6	Pseudomonas sp. 3PA37B6
GCA_005502595.1	SCOF00000000	SAMN08712300	A(2018)	Pseudomonas sp. A(2018)
GCA_005502555.1	SCOK00000000	SAMN08712305	D(2018)	Pseudomonas sp. D(2018)
GCA_005508865.1	SCOM00000000	SAMN08712307	F(2018)	Pseudomonas sp. F(2018)
GCA_005502415.1	SCOO00000000	SAMN08712309	G(2018)	Pseudomonas sp. G(2018)
GCA_005503495.1	SCNP00000000	SAMN08712284	3PA37C10	Ralstonia sp. 3PA37C10
GCA_005503115.1	SCOA00000000	SAMN08712295	4NA327D5	Ralstonia sp. 4NA327D5
GCA_005503345.1	SCMM00000000	SAMN08712255	2FC	Ramlibacter sp. 2FC
GCA_005502805.1	SCMY00000000	SAMN08712267	2SD	Rhizobiales bacterium 2SD
GCA_005502785.1	SCNJ00000000	SAMN08712278	3FA27D7	Rhizobiales bacterium 3FA27D7
GCA_005502345.1	SCPA00000000	SAMN08712321	X1A	Rhizobiales bacterium X1A
GCA_005502975.1	SCPC00000000	SAMN08712323	X2C	Rhizobiales bacterium X2C
GCA_005502925.1	SCPD00000000	SAMN08712324	Y(2018)	Rhizobiales bacterium Y(2018)
GCA_005503035.1	SCOY00000000	SAMN08712319	Q	Rhodococcus sp. Q
GCA_005503555.1	SCNG00000000	SAMN08712275	3F27F6	Rudaea sp. 3F27F6
GCA_005503455.1	SCNQ00000000	SAMN08712285	3R27B10	Sphingomonadaceae bacterium 3R27B10
GCA_005503215.1	SCNS00000000	SAMN08712287	3R27C6	Sphingomonadaceae bacterium 3R27C6
GCA_005503165.1	SCNT00000000	SAMN08712288	3R27E2-A	Sphingomonadaceae bacterium 3R27E2-A
GCA_005503405.1	SCOJ00000000	SAMN08712304	Delta	Sphingomonadaceae bacterium Delta
GCA_005503355.1	SCMK00000000	SAMN08712253	1F27F7B	Sphingomonas sp. 1F27F7B
GCA_005503285.1	SCMZ00000000	SAMN08712268	2SG	Sphingomonas sp. 2SG
GCA_005503245.1	SCNF00000000	SAMN08712274	3F27E9-B	Sphingomonas sp. 3F27E9-B
GCA_005503265.1	SCNH00000000	SAMN08712276	3F27F9	Sphingomonas sp. 3F27F9
GCA_005502745.1	SCNL00000000	SAMN08712280	3P27F8	Sphingomonas sp. 3P27F8
GCA_005503695.1	SCMU00000000	SAMN08712263	2PD	Sphingopyxis sp. 2PD
GCA_005502465.1	SCOT00000000	SAMN08712314	L1A2A	Sphingopyxis sp. L1A2A
GCA_005502375.1	SCOQ00000000	SAMN08712311	J	Staphylococcus sp. J
GCA_005502385.1	SCOV00000000	SAMN08712316	L2B	Staphylococcus sp. L2B
GCA_005502985.1	SCOZ00000000	SAMN08712320	U	Staphylococcus sp. U
GCA_005239635.1	SBBQ00000000	SAMN08774428	Bin_43	Uliginosibacterium gangwonense
GCA_005502705.1	SCNM00000000	SAMN08712281	3P27G3	Variovorax sp. 3P27G3
GCA_005239615.1	SBBR00000000	SAMN08774429	Bin_44_1	archaeon
GCA_005239845.1	SBBD00000000	SAMN08774415	Bin_28_2_1	archaeon
GCA_005240025.1	SBBK00000000	SAMN08774422	Bin_33_1	archaeon
GCA_005239955.1	SBAW00000000	SAMN08774408	Bin_17_1	bacterium
GCA_005239895.1	SBBB00000000	SAMN08774413	Bin_25_1_1	bacterium
GCA_005239765.1	SBBJ00000000	SAMN08774421	Bin_32_2	bacterium
GCA_005239785.1	SBBI00000000	SAMN08774420	Bin_32_1_1	bacterium
GCA_005239605.1	SBBS00000000	SAMN08774430	Bin_46_1	bacterium
GCA_005239695.1	SBBN00000000	SAMN08774425	Bin_37_7	bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	71
Data volume, Mbytes	41059

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groundwater metagenome

Comano Thermal Spring metagenome

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