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Accession: PRJNA309469 ID: 309469

marine sediment metagenome

marine sediment metagenome Genome sequencing and assembly

Sediments from various coordinates in and around the Arabian Sea Oxygen Minimum Zone off the Maharashtra Coast of India.

Accession	PRJNA309469
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	marine sediment metagenome[Taxonomy ID: 412755] unclassified sequences; metagenomes; ecological metagenomes; marine sediment metagenome
Submission	Registration date: 20-Apr-2019 Bose Institute
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3007
WGS master	10
Genomic DNA	13
SRA Experiments	213
Protein Sequences	62455
Other datasets
BioSample	152
Assembly	19

Assembly details:

Assembly level

Number of Assemblies

Complete genome

Complete genome

Scaffold

Contig

9
6
4
19

Assembly	Level	WGS	Chrs	BioSample	Infraspecies Id	Taxonomy
GCA_028201555.1			1	SAMN32648651	BDJS002	Brevibacterium sp. BDJS002
GCA_026013965.1			1	SAMN22418679	JSBI002	Brevibacterium sp. JSBI002
GCA_026014005.1			2	SAMN22417814	JSBI001	Brucella sp. JSBI001
GCA_005096335.1		SWAU00000000		SAMN11475349	SBBC	Cereibacter changlensis
GCA_008274745.1		VTPT00000000		SAMN12620745	RVSM5a	Enterobacter sp. RVSM5a
GCA_029866425.1			3	SAMN34045557	SMJS1	Gordonia sp. SMJS1
GCA_005096345.1		SWAW00000000		SAMN11475377	SB14A	Guyparkeria sp. SB14A
GCA_005218165.1		SSXT00000000		SAMN11431386	15WGF	Halomonas sp. 15WGF
GCA_026104355.1			1	SAMN31497625	BDJS001	Halomonas sp. BDJS001
GCA_020428305.1		VOGA00000000		SAMN12368305	SBBP1	Halomonas sp. SBBP1
GCA_005096325.1		SWAV00000000		SAMN11475375	SBBB	Halopseudomonas bauzanensis
GCA_029866945.1			2	SAMN34065700	SMJS2	Halopseudomonas sp. SMJS2
GCA_026013985.1			1	SAMN22405812	AN1	Marinobacter sp. AN1
GCA_014856545.2			1	SAMN12273885	SBJS01	Mesobacillus jeotgali
GCA_004801425.1		SSSH00000000		SAMN11393081	Bin_30	Methylophaga nitratireducenticrescens
GCA_004832235.1		SSXS00000000		SAMN11431367	SB9B	Methylophaga sp. SB9B
GCA_020428325.2			1	SAMN12369121	SBJS02	Stenotrophomonas sp. SBJS02
GCA_005068605.1		SZNL00000000		SAMN11515579	15WGC	Sulfitobacter sp. 15WGC
GCA_004801465.1		SSSG00000000		SAMN11393080	SK025	Sulfitobacter sp. SK025

SRA Data Details

Parameter	Value
Data volume, Gbases	148
Data volume, Mbytes	92873

Supplemental Content

Related information

Assembly
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BioSample
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Genome
Related Genomes
Genomic DNA
Link to genomic DNA records
Nucleotide
Related Nucleotide entry
Protein
Related Proteins
SRA
All related SRA Experiments
Taxonomy
Taxonomy Links
WGS master
Link to WGS master record(s)

LinkOut to external resources

2890815686: Guyparkeria sp. SB14A [Integrated Microbial Genomes]
2890815686: Guyparkeria sp. SB14A
Integrated Microbial Genomes
2900682122: Halomonas sp. 15WGF [Integrated Microbial Genomes]
2900682122: Halomonas sp. 15WGF
Integrated Microbial Genomes
2891509934: Methylophaga sp. SB9B [Integrated Microbial Genomes]
2891509934: Methylophaga sp. SB9B
Integrated Microbial Genomes

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marine sediment metagenome
marine sediment metagenome
marine sediment metagenome Genome sequencing and assembly

BioProject
BioProject Links for Nucleotide (Select 1631867077) (1)
BioProject
BioSample links for Nucleotide (Select 1631867077) (1)
BioSample
Microbe sample from Cereibacter changlensis
Microbe sample from Cereibacter changlensis

biosample
"collection_4034"[Properties] (188813)
Protein

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