Escherichia coli O121 (ID 387273) - BioProject

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Accession: PRJDB5333 ID: 387273

Escherichia coli O121

Diffuse outbreak investigation and development of rapid screening method by using whole genome sequences of enterohemorrhagic Escherichia coli O121

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To detect nationwide diffuse outbreak of enterohemorrhagic Escherichia coli O121, which showed similar PFGE profiles, SNP analyses were performed by using whole genome sequences.

Accession	PRJDB5333
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli O121[Taxonomy ID: 1055537] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; Escherichia coli O121
Grants	"Research Program on Emerging and Re-emerging Infectious Diseases" (Grant ID N/A, Japan Agency for Medical Research and development)
Submission	Registration date: 18-Mar-2019 Department of Bacteriology I, National Institute of Infectious Diseases

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6745
WGS master	44
SRA Experiments	44
Other datasets
BioSample	44
Assembly	44

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

44
44

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_005381365.1	BDLE00000000	SAMD00067442	151387	Escherichia coli O121
GCA_005381345.1	BDLD00000000	SAMD00067441	151171	Escherichia coli O121
GCA_005381325.1	BDLC00000000	SAMD00067440	150977	Escherichia coli O121
GCA_005381305.1	BDLB00000000	SAMD00067439	150616	Escherichia coli O121
GCA_005381285.1	BDLA00000000	SAMD00067438	150542	Escherichia coli O121
GCA_005381265.1	BDKZ00000000	SAMD00067437	150400	Escherichia coli O121
GCA_005381245.1	BDKY00000000	SAMD00067436	150395	Escherichia coli O121
GCA_005381225.1	BDKX00000000	SAMD00067435	150393	Escherichia coli O121
GCA_005381205.1	BDKW00000000	SAMD00067434	150387	Escherichia coli O121
GCA_005381185.1	BDKV00000000	SAMD00067433	150376	Escherichia coli O121
GCA_005381165.1	BDKU00000000	SAMD00067432	150375	Escherichia coli O121
GCA_005381145.1	BDKT00000000	SAMD00067431	150373	Escherichia coli O121
GCA_005381125.1	BDKS00000000	SAMD00067430	150342	Escherichia coli O121
GCA_005381105.1	BDKR00000000	SAMD00067429	150341	Escherichia coli O121
GCA_005381085.1	BDKQ00000000	SAMD00067428	150340	Escherichia coli O121
GCA_005381065.1	BDKP00000000	SAMD00067427	150339	Escherichia coli O121
GCA_005381045.1	BDKO00000000	SAMD00067426	150338	Escherichia coli O121
GCA_005381025.1	BDKN00000000	SAMD00067425	150337	Escherichia coli O121
GCA_005381005.1	BDKM00000000	SAMD00067424	150281	Escherichia coli O121
GCA_005380985.1	BDKL00000000	SAMD00067423	150243	Escherichia coli O121
GCA_005380965.1	BDKK00000000	SAMD00067422	150242	Escherichia coli O121
GCA_005380945.1	BDKJ00000000	SAMD00067421	150241	Escherichia coli O121
GCA_005380925.1	BDKI00000000	SAMD00067420	150240	Escherichia coli O121
GCA_005380905.1	BDKH00000000	SAMD00067419	150239	Escherichia coli O121
GCA_005380885.1	BDKG00000000	SAMD00067418	150238	Escherichia coli O121
GCA_005380865.1	BDKF00000000	SAMD00067417	150213	Escherichia coli O121
GCA_005380845.1	BDKE00000000	SAMD00067416	150174	Escherichia coli O121
GCA_005380825.1	BDKD00000000	SAMD00067415	150152	Escherichia coli O121
GCA_005380805.1	BDKC00000000	SAMD00067414	150151	Escherichia coli O121
GCA_005380785.1	BDKB00000000	SAMD00067413	142774	Escherichia coli O121
GCA_005380765.1	BDKA00000000	SAMD00067412	142676	Escherichia coli O121
GCA_005380745.1	BDJZ00000000	SAMD00067411	142478	Escherichia coli O121
GCA_005380725.1	BDJY00000000	SAMD00067410	142321	Escherichia coli O121
GCA_005380705.1	BDJX00000000	SAMD00067409	142136	Escherichia coli O121
GCA_005380685.1	BDJW00000000	SAMD00067408	141544	Escherichia coli O121
GCA_005380665.1	BDJV00000000	SAMD00067407	141341	Escherichia coli O121
GCA_005380645.1	BDJU00000000	SAMD00067406	141247	Escherichia coli O121
GCA_005380625.1	BDJT00000000	SAMD00067405	141202	Escherichia coli O121
GCA_005380605.1	BDJS00000000	SAMD00067404	141004	Escherichia coli O121
GCA_005380585.1	BDJR00000000	SAMD00067403	140990	Escherichia coli O121
GCA_005380565.1	BDJQ00000000	SAMD00067402	140961	Escherichia coli O121
GCA_005380545.1	BDJP00000000	SAMD00067401	140452	Escherichia coli O121
GCA_005380525.1	BDJO00000000	SAMD00067400	132137	Escherichia coli O121
GCA_005380505.1	BDJN00000000	SAMD00067399	121512	Escherichia coli O121

SRA Data Details

Parameter	Value
Data volume, Gbases	24
Data volume, Mbytes	14465

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Escherichia coli O121

Diffuse outbreak investigation and development of rapid screening method by using whole genome sequences of enterohemorrhagic Escherichia coli O121

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