microbial mat metagenome (ID 448579) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Nucleotide

Accession: PRJNA448579 ID: 448579

microbial mat metagenome

Freshwater benthic Oscillatoriales (Cyanobacteria) mats

Freshwater benthic Oscillatoriales (Cyanobacteria) mats collected from cobbles in the Eel River (California, USA) in August 2015

Accession	PRJNA448579
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	microbial mat metagenome[Taxonomy ID: 527640] unclassified sequences; metagenomes; ecological metagenomes; microbial mat metagenome
Grants	"Eel River Critical Zone Observatory" (Grant ID EAR-1331940, U.S. NSF) "Science to Achieve Results (STAR) Fellowship" (Grant ID 91767101-0, U.S. Environmental Protection Agency) "Multi-'omic' Analyses of the Dynamics, Mechanisms, and Pathways for Carbon Turnover in Grassland Soil Under Two Climate Regimes" (Grant ID DOE-SC10010566, U.S. Department of Energy)
Submission	Registration date: 22-Feb-2019 Jill Banfield's Lab at Berkeley
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	33931
WGS master	145
SRA Experiments	61
Protein Sequences	356524
Other datasets
BioSample	206
Assembly	145

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Contig

Total

115
30
145

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_004293935.1	RDZH00000000	SAMN10167060	PH2015_06S_46_36	Alphaproteobacteria bacterium
GCA_004293245.1	RDYU00000000	SAMN10167073	PH2015_07D_46_8	Alphaproteobacteria bacterium
GCA_004293195.1	RDYM00000000	SAMN10167081	PH2015_08D_46_9	Alphaproteobacteria bacterium
GCA_004292755.1	RDXE00000000	SAMN10167115	PH2015_14S_64_13	Alphaproteobacteria bacterium
GCA_004292665.1	RDYD00000000	SAMN10167090	PH2015_08U_46_8	Alphaproteobacteria bacterium
GCA_004292675.1	RDXO00000000	SAMN10167105	PH2015_12D_46_26	Alphaproteobacteria bacterium
GCA_004293915.1	RDZG00000000	SAMN10167061	PH2015_06S_32_163	Bacteroidota bacterium
GCA_004294185.1	REAN00000000	SAMN10167028	PH2015_02D_30_9	Bacteroidota bacterium
GCA_004292575.1	RDXD00000000	SAMN10167116	PH2015_14S_48_7	Bacteroidota bacterium
GCA_004292605.1	RDXK00000000	SAMN10167109	PH2015_12U_41_10	Bacteroidota bacterium
GCA_004292795.1	RDXI00000000	SAMN10167111	PH2015_13D_43_10	Bacteroidota bacterium
GCA_004292785.1	RDXG00000000	SAMN10167113	PH2015_13U_35_20	Bacteroidota bacterium
GCA_004292985.1	RDXT00000000	SAMN10167100	PH2015_11S_54_10	Bacteroidota bacterium
GCA_004292965.1	RDXW00000000	SAMN10167097	PH2015_10S_40_6	Bacteroidota bacterium
GCA_004293295.1	RDYC00000000	SAMN10167091	PH2015_08U_38_6	Bacteroidota bacterium
GCA_004293265.1	RDXZ00000000	SAMN10167094	PH2015_09S_30_10	Bacteroidota bacterium
GCA_004293575.1	RDZM00000000	SAMN10167055	PH2015_05S_41_34	Bacteroidota bacterium
GCA_004293675.1	READ00000000	SAMN10167038	PH2015_03U_57_24	Betaproteobacteria bacterium
GCA_004294365.1	REAM00000000	SAMN10167029	PH2015_02D_57_9	Betaproteobacteria bacterium
GCA_004294085.1	RDZQ00000000	SAMN10167051	PH2015_04U_57_31	Betaproteobacteria bacterium
GCA_004294355.1	REAJ00000000	SAMN10167032	PH2015_02U_56_5	Burkholderiales bacterium
GCA_004293765.1	RDZW00000000	SAMN10167045	PH2015_04D_56_11	Burkholderiales bacterium
GCA_004292595.1	RDXM00000000	SAMN10167107	PH2015_12D_48_15	Candidatus Kapaibacterium sp.
GCA_004293725.1	REAW00000000	SAMN10167019	PH2015_01D_58_15	Curvibacter sp.
GCA_004293565.1	RDZF00000000	SAMN10167062	PH2015_06S_60_13	Curvibacter sp.
GCA_004293205.1	RDYT00000000	SAMN10167074	PH2015_07D_41_23	Cytophagales bacterium
GCA_004293585.1	RDZV00000000	SAMN10167046	PH2015_04D_46_33	Cytophagales bacterium
GCA_004292855.1	RDXN00000000	SAMN10167106	PH2015_12D_54_44	Cytophagales bacterium
GCA_004292975.1	RDXS00000000	SAMN10167101	PH2015_11S_30_33	Cytophagales bacterium
GCA_004294475.1	REBB00000000	SAMN10167014	PH2015_01D_30_21	Cytophagales bacterium
GCA_004294445.1	REAZ00000000	SAMN10167016	PH2015_01D_39_27	Cytophagales bacterium
GCA_004294225.1	REBA00000000	SAMN10167015	PH2015_01D_33_11	Cytophagales bacterium
GCA_004294265.1	REAG00000000	SAMN10167035	PH2015_03D_30_9	Cytophagales bacterium
GCA_004294375.1	REAL00000000	SAMN10167030	PH2015_02D_46_24	Cytophagales bacterium
GCA_004293815.1	RDZD00000000	SAMN10167064	PH2015_06S_41_96	Cytophagales bacterium
GCA_004293905.1	RDZE00000000	SAMN10167063	PH2015_06S_38_90	Cytophagales bacterium
GCA_004294005.1	RDZP00000000	SAMN10167052	PH2015_04U_30_13	Cytophagia bacterium
GCA_004294245.1	REAC00000000	SAMN10167039	PH2015_03U_30_10	Cytophagia bacterium
GCA_004293645.1	REAB00000000	SAMN10167040	PH2015_03U_46_23	Cytophagia bacterium
GCA_004295165.1	RDZL00000000	SAMN10167056	PH2015_05S_45_8	Flavobacteriia bacterium
GCA_004293165.1	RDYL00000000	SAMN10167082	PH2015_08D_32_81	Flavobacteriia bacterium
GCA_004293045.1	RDXY00000000	SAMN10167095	PH2015_09S_32_9	Flavobacteriia bacterium
GCA_004293805.1	RDZC00000000	SAMN10167065	PH2015_06S_35_10	Flavobacterium sp.
GCA_020738945.1	JAEQBX000000000	SAMN17127349	PH2017_01_SCD_O_A	Microcoleus sp. PH2017_01_SCD_O_A
GCA_020738905.1	JAEQBY000000000	SAMN17127350	PH2017_02_FOX_O_A	Microcoleus sp. PH2017_02_FOX_O_A
GCA_020738805.1	JAEQBZ000000000	SAMN17127351	PH2017_03_ELD_O_A	Microcoleus sp. PH2017_03_ELD_O_A
GCA_020738835.1	JAEQCA000000000	SAMN17127352	PH2017_04_SCI_O_A	Microcoleus sp. PH2017_04_SCI_O_A
GCA_020738785.1	JAEQCB000000000	SAMN17127353	PH2017_05_CCC_O_A	Microcoleus sp. PH2017_05_CCC_O_A
GCA_020738825.1	JAEQCC000000000	SAMN17127354	PH2017_06_SFM_O_A	Microcoleus sp. PH2017_06_SFM_O_A
GCA_020738685.1	JAEQCD000000000	SAMN17127355	PH2017_07_MST_O_A	Microcoleus sp. PH2017_07_MST_O_A
GCA_020738665.1	JAEQCE000000000	SAMN17127356	PH2017_08_TRC_O_A	Microcoleus sp. PH2017_08_TRC_O_A
GCA_020738625.1	JAEQCF000000000	SAMN17127357	PH2017_09_SFU_O_A	Microcoleus sp. PH2017_09_SFU_O_A
GCA_020738635.1	JAEQCG000000000	SAMN17127358	PH2017_10_PVI_O_A	Microcoleus sp. PH2017_10_PVI_O_A
GCA_020738595.1	JAEQCH000000000	SAMN17127359	PH2017_11_PCY_U_A	Microcoleus sp. PH2017_11_PCY_U_A
GCA_020738565.1	JAEQCI000000000	SAMN17127360	PH2017_12_PCY_D_A	Microcoleus sp. PH2017_12_PCY_D_A
GCA_020738505.1	JAEQCJ000000000	SAMN17127361	PH2017_13_LAR_U_A	Microcoleus sp. PH2017_13_LAR_U_A
GCA_020738465.1	JAEQCK000000000	SAMN17127362	PH2017_14_LAR_D_A	Microcoleus sp. PH2017_14_LAR_D_A
GCA_020738445.1	JAEQCL000000000	SAMN17127363	PH2017_15_JOR_U_A	Microcoleus sp. PH2017_15_JOR_U_A
GCA_020738475.1	JAEQCM000000000	SAMN17127364	PH2017_16_JOR_D_A	Microcoleus sp. PH2017_16_JOR_D_A
GCA_020738515.1	JAEQCN000000000	SAMN17127365	PH2017_17_BER_D_A	Microcoleus sp. PH2017_17_BER_D_A
GCA_020738385.1	JAEQCO000000000	SAMN17127366	PH2017_18_LLB_O_A	Microcoleus sp. PH2017_18_LLB_O_A
GCA_020738265.1	JAEQCP000000000	SAMN17127367	PH2017_19_SFW_U_A	Microcoleus sp. PH2017_19_SFW_U_A
GCA_020738295.1	JAEQCQ000000000	SAMN17127368	PH2017_20_SFW_D_A	Microcoleus sp. PH2017_20_SFW_D_A
GCA_020738285.1	JAEQCR000000000	SAMN17127369	PH2017_21_RUC_O_A	Microcoleus sp. PH2017_21_RUC_O_A
GCA_020738275.1	JAEQCS000000000	SAMN17127370	PH2017_22_RUC_O_B	Microcoleus sp. PH2017_22_RUC_O_B
GCA_020738205.1	JAEQCT000000000	SAMN17127371	PH2017_24_DOB_U_A	Microcoleus sp. PH2017_24_DOB_U_A
GCA_020738135.1	JAEQCU000000000	SAMN17127372	PH2017_25_DOB_D_A	Microcoleus sp. PH2017_25_DOB_D_A
GCA_020738105.1	JAEQCV000000000	SAMN17127373	PH2017_26_ELK_O_A	Microcoleus sp. PH2017_26_ELK_O_A
GCA_020738075.1	JAEQCW000000000	SAMN17127374	PH2017_27_LUM_O_A	Microcoleus sp. PH2017_27_LUM_O_A
GCA_020738035.1	JAEQCX000000000	SAMN17127375	PH2017_28_MFU_U_A	Microcoleus sp. PH2017_28_MFU_U_A
GCA_020738025.1	JAEQCY000000000	SAMN17127376	PH2017_29_MFU_D_A	Microcoleus sp. PH2017_29_MFU_D_A
GCA_020737965.1	JAEQCZ000000000	SAMN17127377	PH2017_30_WIL_O_A	Microcoleus sp. PH2017_30_WIL_O_A
GCA_020737895.1	JAEQDA000000000	SAMN17127378	PH2017_31_RDM_U_A	Microcoleus sp. PH2017_31_RDM_U_A
GCA_020737945.1	JAEQDB000000000	SAMN17127379	PH2017_32_RDM_D_A	Microcoleus sp. PH2017_32_RDM_D_A
GCA_020737905.1	JAEQDC000000000	SAMN17127380	PH2017_33_LGB_O_A	Microcoleus sp. PH2017_33_LGB_O_A
GCA_020737885.1	JAEQDD000000000	SAMN17127381	PH2017_34_RAT_O_A	Microcoleus sp. PH2017_34_RAT_O_A
GCA_020737865.1	JAEQDE000000000	SAMN17127382	PH2017_35_SFW_U_B	Microcoleus sp. PH2017_35_SFW_U_B
GCA_020737805.1	JAEQDF000000000	SAMN17127383	PH2017_36_ELK_O_B	Microcoleus sp. PH2017_36_ELK_O_B
GCA_020737775.1	JAEQDG000000000	SAMN17127384	PH2017_37_MFU_D_B	Microcoleus sp. PH2017_37_MFU_D_B
GCA_020737765.1	JAEQDH000000000	SAMN17127385	PH2017_38_RDM_U_B	Microcoleus sp. PH2017_38_RDM_U_B
GCA_020737835.1	JAEQDI000000000	SAMN17127386	PH2017_39_LGB_O_B	Microcoleus sp. PH2017_39_LGB_O_B
GCA_020737825.1	JAEQDJ000000000	SAMN17127387	PH2017_40_RAT_O_B	Microcoleus sp. PH2017_40_RAT_O_B
GCA_004292695.1	RDXV00000000	SAMN10167098	PH2015_10S_36_12	Nostocales cyanobacterium
GCA_004293145.1	RDYJ00000000	SAMN10167084	PH2015_08D_39_10	Nostocales cyanobacterium
GCA_004293375.1	RDYK00000000	SAMN10167083	PH2015_08D_37_15	Nostocales cyanobacterium
GCA_004295285.1	REAX00000000	SAMN10167018	PH2015_01D_46_31	Oscillatoriales cyanobacterium
GCA_004293365.1	RDYN00000000	SAMN10167080	PH2015_07U_46_236	Oscillatoriales cyanobacterium
GCA_004293395.1	RDYI00000000	SAMN10167085	PH2015_08D_45_74	Oscillatoriales cyanobacterium
GCA_004293185.1	RDYR00000000	SAMN10167076	PH2015_07D_46_1245	Oscillatoriales cyanobacterium
GCA_004293515.1	RDZB00000000	SAMN10167066	PH2015_06S_45_83	Oscillatoriales cyanobacterium
GCA_004293465.1	RDYS00000000	SAMN10167075	PH2015_07D_45_11	Oscillatoriales cyanobacterium
GCA_004293705.1	REAO00000000	SAMN10167027	PH2015_01U_45_14	Oscillatoriales cyanobacterium
GCA_004293745.1	REAY00000000	SAMN10167017	PH2015_01D_44_513	Oscillatoriales cyanobacterium
GCA_004292585.1	RDXF00000000	SAMN10167114	PH2015_13U_45_97	Oscillatoriales cyanobacterium
GCA_004293335.1	RDYH00000000	SAMN10167086	PH2015_08D_46_1646	Oscillatoriales cyanobacterium
GCA_004293075.1	RDYB00000000	SAMN10167092	PH2015_08U_46_180	Oscillatoriales cyanobacterium
GCA_004292955.1	RDXX00000000	SAMN10167096	PH2015_09S_45_247	Oscillatoriales cyanobacterium
GCA_004292945.1	RDXU00000000	SAMN10167099	PH2015_10S_46_199	Oscillatoriales cyanobacterium
GCA_004292845.1	RDXL00000000	SAMN10167108	PH2015_12D_45_607	Oscillatoriales cyanobacterium
GCA_004292895.1	RDXR00000000	SAMN10167102	PH2015_11S_45_847	Oscillatoriales cyanobacterium
GCA_004292775.1	RDXJ00000000	SAMN10167110	PH2015_12U_45_315	Oscillatoriales cyanobacterium
GCA_004292745.1	RDXH00000000	SAMN10167112	PH2015_13D_45_19	Oscillatoriales cyanobacterium
GCA_004294385.1	REAP00000000	SAMN10167026	PH2015_01U_44_212	Oscillatoriales cyanobacterium
GCA_004294345.1	REAI00000000	SAMN10167033	PH2015_02U_45_393	Oscillatoriales cyanobacterium
GCA_004294295.1	REAA00000000	SAMN10167041	PH2015_03U_45_708	Oscillatoriales cyanobacterium
GCA_004294275.1	REAF00000000	SAMN10167036	PH2015_03D_45_235	Oscillatoriales cyanobacterium
GCA_004294025.1	RDZO00000000	SAMN10167053	PH2015_04U_45_1042	Oscillatoriales cyanobacterium
GCA_004294035.1	RDZK00000000	SAMN10167057	PH2015_05S_45_1152	Oscillatoriales cyanobacterium
GCA_004294125.1	RDZU00000000	SAMN10167047	PH2015_04D_45_965	Oscillatoriales cyanobacterium
GCA_004293855.1	RDYZ00000000	SAMN10167068	PH2015_06S_54_30	Oscillatoriales cyanobacterium
GCA_004293835.1	RDZA00000000	SAMN10167067	PH2015_06S_46_2585	Oscillatoriales cyanobacterium
GCA_004295175.1	REAK00000000	SAMN10167031	PH2015_02D_45_1038	Oscillatoriales cyanobacterium
GCA_004292525.1	RDXC00000000	SAMN10167117	PH2015_14S_45_132	Oscillatoriales cyanobacterium
GCA_004292515.1	RDXB00000000	SAMN10167118	PH2015_14S_56_116	Oscillatoriales cyanobacterium
GCA_004293655.1	RDZZ00000000	SAMN10167042	PH2015_03U_58_17	Polaromonas sp.
GCA_004294255.1	RDZT00000000	SAMN10167048	PH2015_04D_65_6	Rhodobacterales bacterium
GCA_004295155.1	REAH00000000	SAMN10167034	PH2015_02U_47_5	Runella slithyformis
GCA_004294145.1	REAE00000000	SAMN10167037	PH2015_03D_46_6	Runella slithyformis
GCA_004293825.1	RDYX00000000	SAMN10167070	PH2015_06S_46_53	Runella slithyformis
GCA_004293785.1	REAT00000000	SAMN10167022	PH2015_01D_46_14	Runella slithyformis
GCA_004293985.1	RDZJ00000000	SAMN10167058	PH2015_05S_46_15	Runella slithyformis
GCA_004293475.1	RDYQ00000000	SAMN10167077	PH2015_07D_46_24	Runella slithyformis
GCA_004293085.1	RDYG00000000	SAMN10167087	PH2015_08D_46_7	Runella slithyformis
GCA_004292915.1	RDXQ00000000	SAMN10167103	PH2015_11S_46_32	Runella slithyformis
GCA_004294015.1	RDZN00000000	SAMN10167054	PH2015_04U_46_82	Runella sp.
GCA_004294495.1	REAS00000000	SAMN10167023	PH2015_01D_34_72	Sphingobacteriales bacterium
GCA_004293945.1	RDZI00000000	SAMN10167059	PH2015_05S_36_9	Sphingobacteriales bacterium
GCA_004294195.1	REAQ00000000	SAMN10167025	PH2015_01D_47_7	Sphingobacteriales bacterium
GCA_004292865.1	RDXP00000000	SAMN10167104	PH2015_11S_37_14	Sphingobacteriales bacterium
GCA_004293485.1	RDYW00000000	SAMN10167071	PH2015_06S_36_19	Sphingobacteriales bacterium
GCA_004295245.1	REAR00000000	SAMN10167024	PH2015_01D_40_17	Sphingobacteriales bacterium
GCA_004295255.1	REAU00000000	SAMN10167021	PH2015_01D_37_39	Sphingobacteriia bacterium
GCA_004295185.1	RDZS00000000	SAMN10167049	PH2015_04D_38_7	Sphingobacteriia bacterium
GCA_004293505.1	RDYY00000000	SAMN10167069	PH2015_06S_48_28	Sphingobacteriia bacterium
GCA_004294465.1	REAV00000000	SAMN10167020	PH2015_01D_36_10	Sphingobacteriia bacterium
GCA_004294135.1	RDZY00000000	SAMN10167043	PH2015_03U_37_29	Sphingobacteriia bacterium
GCA_004292705.1	RDXA00000000	SAMN10167119	PH2015_14S_65_9	Sphingomonadales bacterium
GCA_004295145.1	RDZX00000000	SAMN10167044	PH2015_03U_62_7	Verrucomicrobiota bacterium
GCA_004294095.1	RDZR00000000	SAMN10167050	PH2015_04D_52_11	Verrucomicrobiota bacterium
GCA_004293445.1	RDYP00000000	SAMN10167078	PH2015_07D_62_35	Verrucomicrobiota bacterium
GCA_004293105.1	RDYE00000000	SAMN10167089	PH2015_08D_62_147	Verrucomicrobiota bacterium
GCA_004293385.1	RDYO00000000	SAMN10167079	PH2015_07D_67_13	Verrucomicrobiota bacterium
GCA_004293285.1	RDYF00000000	SAMN10167088	PH2015_08D_54_98	Verrucomicrobiota bacterium
GCA_004293275.1	RDYV00000000	SAMN10167072	PH2015_06S_62_27	Verrucomicrobiota bacterium
GCA_004293065.1	RDYA00000000	SAMN10167093	PH2015_08U_61_10	Verrucomicrobiota bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	537
Data volume, Tbytes	0.23

BioProject

Result Filters

Display Settings:

Send to:

Links from Nucleotide

microbial mat metagenome

Freshwater benthic Oscillatoriales (Cyanobacteria) mats

Supplemental Content

Related information

Recent activity