ID 479542 - BioProject

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Accession: PRJNA479542 ID: 479542

Whole Genome Sequence Analysis of Avian Pathogenic E. coli - An Australian Perspective

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This project is a component of the Genome submissions of the Ausgem initiative

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15 additional projects are components of the Genome submissions of the Ausgem initiative.

This investigation was intended to be a genomic epidemiological snapshot of Australian APEC populations to infer their potential as a reservoir of potential human pathogens and clinically relevant genetic material, including antimicrobial resistance genes/plasmids, virulence plasmids, and associated genetic elements

Accession	PRJNA479542
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 4-Jul-2018 University of Technology, Sydney
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	23273
WGS master	97
SRA Experiments	98
Protein Sequences	510456
Other datasets
BioSample	97
Assembly	97

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

10
87
97

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_003319015.1	QOEM00000000	SAMN09580052	AVC252	Escherichia coli
GCA_003318985.1	QOEL00000000	SAMN09580053	AVC256	Escherichia coli
GCA_003319035.1	QOEP00000000	SAMN09580049	AVC246	Escherichia coli
GCA_003319045.1	QOEQ00000000	SAMN09580048	AVC242	Escherichia coli
GCA_003319075.1	QOER00000000	SAMN09580047	AVC237	Escherichia coli
GCA_003318945.1	QOEH00000000	SAMN09579970	AVC30	Escherichia coli
GCA_003318935.1	QOEG00000000	SAMN09579971	AVC34	Escherichia coli
GCA_003318965.1	QOEI00000000	SAMN09579969	AVC29	Escherichia coli
GCA_003318875.1	QOED00000000	SAMN09579957	AVC4	Escherichia coli
GCA_003318885.1	QOEE00000000	SAMN09579974	AVC39	Escherichia coli
GCA_003318825.1	QOEC00000000	SAMN09579975	AVC51	Escherichia coli
GCA_003318865.1	QOEW00000000	SAMN09580042	AVC228	Escherichia coli
GCA_003318855.1	QOEV00000000	SAMN09580043	AVC232	Escherichia coli
GCA_003318815.1	QOEX00000000	SAMN09580041	AVC227	Escherichia coli
GCA_003318705.1	QOEN00000000	SAMN09580051	AVC251	Escherichia coli
GCA_003318765.1	QOET00000000	SAMN09580045	AVC234	Escherichia coli
GCA_003318755.1	QOEU00000000	SAMN09580044	AVC233	Escherichia coli
GCA_003318745.1	QOES00000000	SAMN09580046	AVC235	Escherichia coli
GCA_003318735.1	QOEO00000000	SAMN09580050	AVC249	Escherichia coli
GCA_003318695.1	QOEJ00000000	SAMN09579968	AVC26	Escherichia coli
GCA_003318665.1	QOEK00000000	SAMN09579967	AVC25	Escherichia coli
GCA_003318575.1	QODZ00000000	SAMN09579958	AVC5	Escherichia coli
GCA_003318655.1	QOEB00000000	SAMN09579976	AVC58	Escherichia coli
GCA_003318635.1	QOEF00000000	SAMN09579972	AVC35	Escherichia coli
GCA_003318595.1	QODY00000000	SAMN09579978	AVC60	Escherichia coli
GCA_003318605.1	QOEA00000000	SAMN09579977	AVC59	Escherichia coli
GCA_003318555.1	QODX00000000	SAMN09579979	AVC61	Escherichia coli
GCA_003318485.1	QODT00000000	SAMN09579959	AVC7	Escherichia coli
GCA_003318525.1	QODW00000000	SAMN09579980	AVC64	Escherichia coli
GCA_003318475.1	QODV00000000	SAMN09579981	AVC65	Escherichia coli
GCA_003318455.1	QODS00000000	SAMN09579984	AVC80	Escherichia coli
GCA_003318495.1	QODU00000000	SAMN09579982	AVC77	Escherichia coli
GCA_003318385.1	QODM00000000	SAMN09579989	AVC98	Escherichia coli
GCA_003318395.1	QODQ00000000	SAMN09579985	AVC91	Escherichia coli
GCA_003318405.1	QODR00000000	SAMN09579960	AVC8	Escherichia coli
GCA_003318375.1	QODN00000000	SAMN09579988	AVC97	Escherichia coli
GCA_003318335.1	QODP00000000	SAMN09579986	AVC94	Escherichia coli
GCA_003318345.1	QODO00000000	SAMN09579987	AVC96	Escherichia coli
GCA_003339565.1	QOFH00000000	SAMN09580032	AVC216	Escherichia coli
GCA_003339025.1	QOGW00000000	SAMN09579991	AVC105	Escherichia coli
GCA_003338965.1	QOGI00000000	SAMN09580002	AVC154	Escherichia coli
GCA_003338945.1	QOGV00000000	SAMN09579992	AVC106	Escherichia coli
GCA_003338975.1	QOGP00000000	SAMN09579962	AVC11	Escherichia coli
GCA_003338955.1	QOHA00000000	SAMN09580015	AVC183	Escherichia coli
GCA_003338905.1	QOGR00000000	SAMN09579995	AVC111	Escherichia coli
GCA_003338875.1	QOGQ00000000	SAMN09579996	AVC113	Escherichia coli
GCA_003338885.1	QOGU00000000	SAMN09579993	AVC107	Escherichia coli
GCA_003338865.1	QOGO00000000	SAMN09579997	AVC123	Escherichia coli
GCA_003338815.1	QOGL00000000	SAMN09579999	AVC148	Escherichia coli
GCA_003338805.1	QOGN00000000	SAMN09579998	AVC126	Escherichia coli
GCA_003338795.1	QOHD00000000	SAMN09580003	AVC155	Escherichia coli
GCA_003338785.1	QOGJ00000000	SAMN09580001	AVC153	Escherichia coli
GCA_003338735.1	QOGF00000000	SAMN09580006	AVC160	Escherichia coli
GCA_003338705.1	QOGH00000000	SAMN09580004	AVC156	Escherichia coli
GCA_003338695.1	QOGG00000000	SAMN09580005	AVC159	Escherichia coli
GCA_003338635.1	QOGZ00000000	SAMN09580029	AVC211	Escherichia coli
GCA_003338645.1	QOHC00000000	SAMN09580007	AVC161	Escherichia coli
GCA_003338655.1	QOGY00000000	SAMN09579973	AVC38	Escherichia coli
GCA_003337985.1	QOFK00000000	SAMN09580028	AVC210	Escherichia coli
GCA_003337975.1	QOFM00000000	SAMN09580027	AVC209	Escherichia coli
GCA_003337945.1	QOFG00000000	SAMN09580033	AVC218	Escherichia coli
GCA_003337895.1	QOFB00000000	SAMN09580037	AVC222	Escherichia coli
GCA_003337935.1	QOFE00000000	SAMN09579966	AVC21	Escherichia coli
GCA_003337905.1	QOFD00000000	SAMN09580035	AVC220	Escherichia coli
GCA_003337815.1	QOGX00000000	SAMN09579983	AVC79	Escherichia coli
GCA_003337865.1	QOFA00000000	SAMN09580038	AVC223	Escherichia coli
GCA_003337835.1	QOEZ00000000	SAMN09580039	AVC224	Escherichia coli
GCA_003337825.1	QOEY00000000	SAMN09580040	AVC226	Escherichia coli
GCA_003338545.1	QOHE00000000	SAMN09579990	AVC103	Escherichia coli
GCA_003338515.1	QOGC00000000	SAMN09580011	AVC173	Escherichia coli
GCA_003338525.1	QOGE00000000	SAMN09580008	AVC162	Escherichia coli
GCA_003338535.1	QOHB00000000	SAMN09580009	AVC167	Escherichia coli
GCA_003338465.1	QOFW00000000	SAMN09580018	AVC191	Escherichia coli
GCA_003338445.1	QOFT00000000	SAMN09580021	AVC197	Escherichia coli
GCA_003338435.1	QOFS00000000	SAMN09580022	AVC198	Escherichia coli
GCA_003338455.1	QOFV00000000	SAMN09580019	AVC195	Escherichia coli
GCA_003338355.1	QOFF00000000	SAMN09580034	AVC219	Escherichia coli
GCA_003338395.1	QOFN00000000	SAMN09580026	AVC207	Escherichia coli
GCA_003338405.1	QOFR00000000	SAMN09579964	AVC19	Escherichia coli
GCA_003338365.1	QOFL00000000	SAMN09579965	AVC20	Escherichia coli
GCA_003338325.1	QOGT00000000	SAMN09579994	AVC109	Escherichia coli
GCA_003338305.1	QOFC00000000	SAMN09580036	AVC221	Escherichia coli
GCA_003338295.1	QOGS00000000	SAMN09579961	AVC10	Escherichia coli
GCA_003338275.1	QOGM00000000	SAMN09579963	AVC12	Escherichia coli
GCA_003338215.1	QOGB00000000	SAMN09580012	AVC176	Escherichia coli
GCA_003338225.1	QOGD00000000	SAMN09580010	AVC171	Escherichia coli
GCA_003338235.1	QOGK00000000	SAMN09580000	AVC149	Escherichia coli
GCA_003338175.1	QOFZ00000000	SAMN09580014	AVC179	Escherichia coli
GCA_003338155.1	QOFY00000000	SAMN09580016	AVC184	Escherichia coli
GCA_003338165.1	QOFX00000000	SAMN09580017	AVC186	Escherichia coli
GCA_003338135.1	QOGA00000000	SAMN09580013	AVC177	Escherichia coli
GCA_003338075.1	QOFJ00000000	SAMN09580030	AVC213	Escherichia coli
GCA_003338115.1	QOFU00000000	SAMN09580020	AVC196	Escherichia coli
GCA_003338065.1	QOFI00000000	SAMN09580031	AVC215	Escherichia coli
GCA_003338055.1	QOFQ00000000	SAMN09580023	AVC200	Escherichia coli
GCA_003338035.1	QOFP00000000	SAMN09580024	AVC201	Escherichia coli
GCA_003338015.1	QOFO00000000	SAMN09580025	AVC204	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	32
Data volume, Mbytes	13066

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Whole Genome Sequence Analysis of Avian Pathogenic E. coli - An Australian Perspective

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