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Accession: PRJNA350904 ID: 350904

Xanthomonas oryzae pv. oryzae

Xanthomonas oryzae pv. oryzae Genome sequencing and assembly

See Genome Information for Xanthomonas oryzae
More than 260 Xanthomonas oryzae pv. oryzae (Xoo) strains were collected from rice leaf of different provinces of China during the past 30 years. We sequenced these genomes to study the evolution and dynamics of Xoo in China.
AccessionPRJNA350904
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismXanthomonas oryzae pv. oryzae[Taxonomy ID: 64187]
Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas; Xanthomonas oryzae; Xanthomonas oryzae pv. oryzae
SubmissionRegistration date: 9-Jul-2018
Huazhong Agricultural University
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)200612
WGS master232
Genomic DNA10
SRA Experiments308
Protein Sequences1011484
Other datasets
BioSample254
Assembly242
Assembly details:
Assembly levelNumber of Assemblies
10
232
242
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_003388465.1ScaffoldQTZM00000000
SAMN05953167
PXO71
GCA_003382935.1Complete genomeSAMN05953178
YC11
GCA_003382915.1Complete genomeSAMN05953164
PX086
GCA_003382895.1Complete genomeSAMN05953163
PX079
GCA_003382875.1Complete genomeSAMN05953144
OS198
GCA_003382855.1Complete genomeSAMN05953100
JP01
GCA_003382835.1Complete genomeSAMN05953096
JL33
GCA_003382815.1Complete genomeSAMN05953090
JL28
GCA_003382795.1Complete genomeSAMN05953089
JL25
GCA_003382775.1Complete genomeSAMN05953072
HuN37
GCA_003382265.1ScaffoldQTKH00000000
SAMN05953132
LYG49
GCA_003299075.1ScaffoldQNQB00000000
SAMN05953223
YN5
GCA_003298825.1ScaffoldQNQJ00000000
SAMN05953231
ZJ28
GCA_003298195.1ScaffoldQNHY00000000
SAMN05952988
AH40
GCA_003298455.1ScaffoldQNHQ00000000
SAMN05952980
172
GCA_003298205.1ScaffoldQNHX00000000
SAMN05952987
AH4
GCA_003298235.1ScaffoldQNHW00000000
SAMN05952986
AH39
GCA_003298365.1ScaffoldQNHR00000000
SAMN05952981
296
GCA_003298245.1ScaffoldQNHU00000000
SAMN05952984
AH11
GCA_003298965.1ScaffoldQNQI00000000
SAMN05953230
ZJ27
GCA_003299145.1ScaffoldQNPY00000000
SAMN05953220
YN39
GCA_003299055.1ScaffoldQNQE00000000
SAMN05953226
ZJ05
GCA_003299175.1ScaffoldQNPX00000000
SAMN05953219
YN38
GCA_003299275.1ScaffoldQNPR00000000
SAMN05953213
YN16
GCA_003299065.1ScaffoldQNQA00000000
SAMN05953222
YN44
GCA_003299565.1ScaffoldQNPL00000000
SAMN05953205
YN08
GCA_003299635.1ScaffoldQNPI00000000
SAMN05953202
YN04-5
GCA_003299625.1ScaffoldQNPJ00000000
SAMN05953203
YN06
GCA_003299365.1ScaffoldQNPQ00000000
SAMN05953212
YN15
GCA_003299225.1ScaffoldQNPW00000000
SAMN05953218
YN30
GCA_003300375.1ScaffoldQNOC00000000
SAMN05953160
OS82
GCA_003300385.1ScaffoldQNOA00000000
SAMN05953158
OS70
GCA_003300585.1ScaffoldQNNQ00000000
SAMN05953146
OS221
GCA_003300235.1ScaffoldQNOF00000000
SAMN05953162
PX061
GCA_003300515.1ScaffoldQNNR00000000
SAMN05953148
OS225
GCA_003299875.1ScaffoldQNOW00000000
SAMN05953189
YN03-09
GCA_003300265.1ScaffoldQNOE00000000
SAMN05953161
PX0124
GCA_003299835.1ScaffoldQNOZ00000000
SAMN05953192
YN03-13
GCA_003300225.1ScaffoldQNOI00000000
SAMN05953173
XZ39
GCA_003300215.1ScaffoldQNOK00000000
SAMN05953175
XZ42
GCA_003299885.1ScaffoldQNOV00000000
SAMN05953188
YN03-07
GCA_003300125.1ScaffoldQNOM00000000
SAMN05953177
XZ44
GCA_003300075.1ScaffoldQNON00000000
SAMN05953179
YC20
GCA_003300055.1ScaffoldQNOQ00000000
SAMN05953182
YC36
GCA_003300065.1ScaffoldQNOR00000000
SAMN05953184
YN03-02
GCA_003299265.1ScaffoldQNPV00000000
SAMN05953217
YN23
GCA_003299955.1ScaffoldQNOS00000000
SAMN05953185
YN03-03
GCA_003299865.1ScaffoldQNOX00000000
SAMN05953190
YN03-10
GCA_003299395.1ScaffoldQNPP00000000
SAMN05953211
YN14
GCA_003299435.1ScaffoldQNPO00000000
SAMN05953210
YN14
GCA_003299755.1ScaffoldQNPA00000000
SAMN05953193
YN03-14
GCA_003298815.1ScaffoldQNQK00000000
SAMN05953232
ZPY1
GCA_003298955.1ScaffoldQNQH00000000
SAMN05953229
ZJ26
GCA_003299525.1ScaffoldQNPM00000000
SAMN05953208
YN11
GCA_003299665.1ScaffoldQNPF00000000
SAMN05953198
YN03-21
GCA_003299745.1ScaffoldQNPE00000000
SAMN05953197
YN03-20
GCA_003300415.1ScaffoldQNNZ00000000
SAMN05953157
OS57
GCA_003300465.1ScaffoldQNNU00000000
SAMN05953152
OS34
GCA_003300685.1ScaffoldQNNO00000000
SAMN05953143
OS189
GCA_003300715.1ScaffoldQNNN00000000
SAMN05953142
OS185
GCA_003300505.1ScaffoldQNNT00000000
SAMN05953150
OS27
GCA_003300615.1ScaffoldQNNP00000000
SAMN05953145
OS209
GCA_003300815.1ScaffoldQNNK00000000
SAMN05953139
OS169
GCA_003300845.1ScaffoldQNNG00000000
SAMN05953135
LYG53
GCA_003301295.1ScaffoldQNNX00000000
SAMN05953155
OS48
GCA_003301345.1ScaffoldQNNH00000000
SAMN05953136
OS109
GCA_003301335.1ScaffoldQNNI00000000
SAMN05953137
OS15
GCA_003294095.1ScaffoldQNQF00000000
SAMN05953227
ZJ16
GCA_003294085.1ScaffoldQNQG00000000
SAMN05953228
ZJ25
GCA_003294155.1ScaffoldQNPZ00000000
SAMN05953221
YN40
GCA_003294115.1ScaffoldQNQD00000000
SAMN05953225
YN8
GCA_003294135.1ScaffoldQNQC00000000
SAMN05953224
YN6
GCA_003294195.1ScaffoldQNPU00000000
SAMN05953216
YN20
GCA_003294205.1ScaffoldQNPT00000000
SAMN05953215
YN19
GCA_003294225.1ScaffoldQNPN00000000
SAMN05953209
YN11
GCA_003294295.1ScaffoldQNPD00000000
SAMN05953196
YN03-18
GCA_003294405.1ScaffoldQNOT00000000
SAMN05953186
YN03-04
GCA_003294345.1ScaffoldQNPB00000000
SAMN05953194
YN03-15
GCA_003294335.1ScaffoldQNPC00000000
SAMN05953195
YN03-16
GCA_003294275.1ScaffoldQNPK00000000
SAMN05953204
YN07
GCA_003294215.1ScaffoldQNPS00000000
SAMN05953214
YN17
GCA_003294285.1ScaffoldQNPG00000000
SAMN05953199
YN03-23
GCA_003294385.1ScaffoldQNOU00000000
SAMN05953187
YN03-06
GCA_003294365.1ScaffoldQNOY00000000
SAMN05953191
YN03-11
GCA_003294425.1ScaffoldQNOP00000000
SAMN05953181
YC3
GCA_003294445.1ScaffoldQNOO00000000
SAMN05953180
YC26
GCA_003294495.1ScaffoldQNOJ00000000
SAMN05953174
XZ40
GCA_003294465.1ScaffoldQNOL00000000
SAMN05953176
XZ43
GCA_003294505.1ScaffoldQNOH00000000
SAMN05953172
SX-85-73
GCA_003294525.1ScaffoldQNOG00000000
SAMN05953170
ScHy-b
GCA_003294585.1ScaffoldQNNY00000000
SAMN05953156
OS54
GCA_003294545.1ScaffoldQNOD00000000
SAMN05953166
PXO112
GCA_003294605.1ScaffoldQNNV00000000
SAMN05953153
OS35
GCA_003294715.1ScaffoldQNNF00000000
SAMN05953134
LYG52
GCA_003294575.1ScaffoldQNOB00000000
SAMN05953159
OS77
GCA_003294665.1ScaffoldQNNM00000000
SAMN05953141
OS182
GCA_003294595.1ScaffoldQNNW00000000
SAMN05953154
OS44
GCA_003294635.1ScaffoldQNNS00000000
SAMN05953149
OS26
GCA_003294695.1ScaffoldQNNJ00000000
SAMN05953138
OS166
GCA_003294745.1ScaffoldQNNB00000000
SAMN05953129
LYG03-13
GCA_003294675.1ScaffoldQNNL00000000
SAMN05953140
OS181
GCA_003294835.1ScaffoldQNMU00000000
SAMN05953121
LN-85-59
GCA_003294765.1ScaffoldQNMX00000000
SAMN05953125
LYG03-05
GCA_003294775.1ScaffoldQNMZ00000000
SAMN05953127
LYG03-08
GCA_003294875.1ScaffoldQNMR00000000
SAMN05953118
LN2
GCA_003294955.1ScaffoldQNMI00000000
SAMN05953109
JX19
GCA_003294795.1ScaffoldQNMW00000000
SAMN05953124
LYG03-04
GCA_003294995.1ScaffoldQNMA00000000
SAMN05953101
JP02
GCA_003295045.1ScaffoldQNLY00000000
SAMN05953098
JL6
GCA_003294965.1ScaffoldQNMH00000000
SAMN05953108
JS72
GCA_003294885.1ScaffoldQNMN00000000
SAMN05953114
LFX325
GCA_003294945.1ScaffoldQNMK00000000
SAMN05953111
KS-2-2
GCA_003295065.1ScaffoldQNLQ00000000
SAMN05953087
JL23
GCA_003295075.1ScaffoldQNLN00000000
SAMN05953084
JL19
GCA_003295125.1ScaffoldQNLJ00000000
SAMN05953080
JL15
GCA_003295135.1ScaffoldQNLD00000000
SAMN05953074
HuN39
GCA_003295175.1ScaffoldQNKY00000000
SAMN05953068
HUN22
GCA_003295035.1ScaffoldQNLS00000000
SAMN05953091
JL29
GCA_003295185.1ScaffoldQNKX00000000
SAMN05953067
HUN20
GCA_003295245.1ScaffoldQNKL00000000
SAMN05953055
HLJ02
GCA_003295085.1ScaffoldQNLL00000000
SAMN05953082
JL16
GCA_003295215.1ScaffoldQNKU00000000
SAMN05953064
HuN03-02
GCA_003295275.1ScaffoldQNKF00000000
SAMN05953049
HeN03-10
GCA_003295315.1ScaffoldQNKE00000000
SAMN05953048
HeN03-06
GCA_003295335.1ScaffoldQNJV00000000
SAMN05953039
GX6
GCA_003295235.1ScaffoldQNKP00000000
SAMN05953059
HN-7
GCA_003295375.1ScaffoldQNJN00000000
SAMN05953031
GX2
GCA_003295225.1ScaffoldQNKS00000000
SAMN05953062
HuB03-06
GCA_003295365.1ScaffoldQNJP00000000
SAMN05953033
GX3
GCA_003295325.1ScaffoldQNJY00000000
SAMN05953042
HB-84-17
GCA_003295425.1ScaffoldQNJI00000000
SAMN05953026
GD416
GCA_003295485.1ScaffoldQNJC00000000
SAMN05953019
GD407
GCA_003295405.1ScaffoldQNJL00000000
SAMN05953029
GX09
GCA_003295455.1ScaffoldQNJG00000000
SAMN05953024
GD413
GCA_003295645.1ScaffoldQNHZ00000000
SAMN05952989
AH8
GCA_003295635.1ScaffoldQNIA00000000
SAMN05952990
AH87
GCA_003295585.1ScaffoldQNIG00000000
SAMN05952996
DBX0016
GCA_003295565.1ScaffoldQNIX00000000
SAMN05953014
GD401
GCA_003295545.1ScaffoldQNIY00000000
SAMN05953015
GD402
GCA_003295525.1ScaffoldQNIR00000000
SAMN05953008
FJ22
GCA_003295435.1ScaffoldQNJK00000000
SAMN05953028
GX07
GCA_003295515.1ScaffoldQNIZ00000000
SAMN05953016
GD403
GCA_003295705.1ScaffoldQNHT00000000
SAMN05952983
AH1
GCA_003295625.1ScaffoldQNIB00000000
SAMN05952991
BJ12
GCA_003295615.1ScaffoldQNID00000000
SAMN05952993
BJ84-4
GCA_003295735.1ScaffoldQNHP00000000
SAMN05952979
26
GCA_003295725.1ScaffoldQNHS00000000
SAMN05952982
#2
GCA_003295795.1ScaffoldQNND00000000
SAMN05953131
LYG48
GCA_003295775.1ScaffoldQNNE00000000
SAMN05953133
LYG51
GCA_003295825.1ScaffoldQNMY00000000
SAMN05953126
LYG03-07
GCA_003295695.1ScaffoldQNHV00000000
SAMN05952985
AH3
GCA_003295805.1ScaffoldQNNC00000000
SAMN05953130
LYG46
GCA_003295845.1ScaffoldQNNA00000000
SAMN05953128
LYG03-11
GCA_003295925.1ScaffoldQNMQ00000000
SAMN05953117
LN1
GCA_003295915.1ScaffoldQNMS00000000
SAMN05953119
LN3
GCA_003297035.1ScaffoldQNJW00000000
SAMN05953040
HaN1
GCA_003296985.1ScaffoldQNJZ00000000
SAMN05953043
HB-84-21
GCA_003297025.1ScaffoldQNJX00000000
SAMN05953041
HB8417
GCA_003296925.1ScaffoldQNKD00000000
SAMN05953047
HeN03-04
GCA_003296915.1ScaffoldQNKA00000000
SAMN05953044
HeN03-01
GCA_003296935.1ScaffoldQNKC00000000
SAMN05953046
HeN03-03
GCA_003296805.1ScaffoldQNKJ00000000
SAMN05953053
HEN11
GCA_003296715.1ScaffoldQNKQ00000000
SAMN05953060
HN-84-31
GCA_003296685.1ScaffoldQNKR00000000
SAMN05953061
HN-84-35
GCA_003296655.1ScaffoldQNKV00000000
SAMN05953065
HUN14
GCA_003296675.1ScaffoldQNKW00000000
SAMN05953066
HUN17
GCA_003296815.1ScaffoldQNKK00000000
SAMN05953054
HEN12
GCA_003296855.1ScaffoldQNKI00000000
SAMN05953052
HEN08
GCA_003296865.1ScaffoldQNKG00000000
SAMN05953050
HeN03-11
GCA_003296845.1ScaffoldQNKH00000000
SAMN05953051
HeN03-16
GCA_003296745.1ScaffoldQNKO00000000
SAMN05953058
HN14
GCA_003296775.1ScaffoldQNKM00000000
SAMN05953056
HLJ85-69
GCA_003296495.1ScaffoldQNLI00000000
SAMN05953079
JL13
GCA_003296465.1ScaffoldQNLG00000000
SAMN05953078
JL12
GCA_003296455.1ScaffoldQNLK00000000
SAMN05953081
JL15
GCA_003296395.1ScaffoldQNLR00000000
SAMN05953088
JL24
GCA_003296945.1ScaffoldQNKB00000000
SAMN05953045
HeN03-02
GCA_003296565.1ScaffoldQNLE00000000
SAMN05953076
JL1
GCA_003296515.1ScaffoldQNLF00000000
SAMN05953077
JL11
GCA_003296575.1ScaffoldQNLA00000000
SAMN05953070
HuN33
GCA_003296695.1ScaffoldQNKT00000000
SAMN05953063
HUB14
GCA_003296625.1ScaffoldQNKZ00000000
SAMN05953069
HuN32
GCA_003296615.1ScaffoldQNLB00000000
SAMN05953071
HuN36
GCA_003296765.1ScaffoldQNKN00000000
SAMN05953057
HLJ-85-72
GCA_003296555.1ScaffoldQNLC00000000
SAMN05953073
HuN38
GCA_003296105.1ScaffoldQNMC00000000
SAMN05953103
JP04
GCA_003296035.1ScaffoldQNMF00000000
SAMN05953106
JS68
GCA_003296115.1ScaffoldQNMB00000000
SAMN05953102
JP03
GCA_003296005.1ScaffoldQNML00000000
SAMN05953112
KS-6-6
GCA_003295955.1ScaffoldQNMP00000000
SAMN05953116
LN02
GCA_003295855.1ScaffoldQNMV00000000
SAMN05953122
LYG03-02
GCA_003295865.1ScaffoldQNMT00000000
SAMN05953120
LN8547
GCA_003295965.1ScaffoldQNMO00000000
SAMN05953115
LN01
GCA_003296015.1ScaffoldQNMJ00000000
SAMN05953110
JX21
GCA_003295975.1ScaffoldQNMM00000000
SAMN05953113
KSI-3
GCA_003296065.1ScaffoldQNME00000000
SAMN05953105
JS65
GCA_003296505.1ScaffoldQNLH00000000
SAMN05953075
JL1-2003
GCA_003296355.1ScaffoldQNLU00000000
SAMN05953094
JL30
GCA_003296335.1ScaffoldQNLV00000000
SAMN05953095
JL31
GCA_003296415.1ScaffoldQNLM00000000
SAMN05953083
JL17
GCA_003296405.1ScaffoldQNLP00000000
SAMN05953086
JL22
GCA_003296365.1ScaffoldQNLT00000000
SAMN05953093
JL3
GCA_003296245.1ScaffoldQNLX00000000
SAMN05953097
JL4
GCA_003296075.1ScaffoldQNMD00000000
SAMN05953104
JS158-2
GCA_003296255.1ScaffoldQNLO00000000
SAMN05953085
JL21
GCA_003296295.1ScaffoldQNMG00000000
SAMN05953107
JS69
GCA_003296305.1ScaffoldQNLW00000000
SAMN05953092
JL3
GCA_003296135.1ScaffoldQNLZ00000000
SAMN05953099
JNXO
GCA_003298095.1ScaffoldQNIC00000000
SAMN05952992
BJ84-3
GCA_003298075.1ScaffoldQNIE00000000
SAMN05952994
DBX0011
GCA_003298065.1ScaffoldQNIH00000000
SAMN05952997
DBX0017
GCA_003298055.1ScaffoldQNIF00000000
SAMN05952995
DBX0013
GCA_003297945.1ScaffoldQNII00000000
SAMN05952998
DBX0018
GCA_003297905.1ScaffoldQNIL00000000
SAMN05953001
DBX0023
GCA_003297895.1ScaffoldQNIK00000000
SAMN05953000
DBX0020
GCA_003297915.1ScaffoldQNIJ00000000
SAMN05952999
DBX0019
GCA_003297775.1ScaffoldQNIN00000000
SAMN05953003
DBX004
GCA_003297765.1ScaffoldQNIO00000000
SAMN05953005
FJ16
GCA_003297785.1ScaffoldQNIM00000000
SAMN05953002
DBX0024
GCA_003297745.1ScaffoldQNIP00000000
SAMN05953006
FJ17
GCA_003297535.1ScaffoldQNIU00000000
SAMN05953011
GD32
GCA_003297685.1ScaffoldQNIQ00000000
SAMN05953007
FJ21
GCA_003297625.1ScaffoldQNIS00000000
SAMN05953009
FJ24
GCA_003297605.1ScaffoldQNIT00000000
SAMN05953010
G8
GCA_003297505.1ScaffoldQNIV00000000
SAMN05953012
GD33
GCA_003297475.1ScaffoldQNIW00000000
SAMN05953013
GD38
GCA_003297265.1ScaffoldQNJF00000000
SAMN05953023
GD412
GCA_003297375.1ScaffoldQNJB00000000
SAMN05953018
GD405
GCA_003297395.1ScaffoldQNJA00000000
SAMN05953017
GD404
GCA_003297245.1ScaffoldQNJH00000000
SAMN05953025
GD415
GCA_003297285.1ScaffoldQNJD00000000
SAMN05953020
GD408
GCA_003297095.1ScaffoldQNJT00000000
SAMN05953037
GX5
GCA_003297085.1ScaffoldQNJU00000000
SAMN05953038
GX56
GCA_003297145.1ScaffoldQNJR00000000
SAMN05953035
GX4
GCA_003297135.1ScaffoldQNJS00000000
SAMN05953036
GX49
GCA_003297155.1ScaffoldQNJQ00000000
SAMN05953034
GX35
GCA_003297195.1ScaffoldQNJM00000000
SAMN05953030
GX1
GCA_003297275.1ScaffoldQNJE00000000
SAMN05953022
GD411
GCA_003297235.1ScaffoldQNJJ00000000
SAMN05953027
GD417
GCA_003297175.1ScaffoldQNJO00000000
SAMN05953032
GX23
GCA_003311715.1ScaffoldQNPH00000000
SAMN05953200
YN03-24
GCA_044358565.1Complete genomeSAMN05953207
YN10
SRA Data Details
ParameterValue
Data volume, Gbases370
Data volume, Tbytes0.15

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