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Links from Nucleotide

Accession: PRJNA376580 ID: 376580

indoor metagenome

Metagenomes from hospital (NICU) surfaces and sinks

This data was generated to recover genomes from hospital (NICU) surfaces and sinks.
AccessionPRJNA376580
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismindoor metagenome[Taxonomy ID: 1256227]
unclassified sequences; metagenomes; ecological metagenomes; indoor metagenome
Publications (total 3)
  • Olm MR et al., "Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.", Microbiome, 2019 Feb 15;7(1):26
More...
SubmissionRegistration date: 18-Jun-2018
Banfield Lab
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)45363
WGS master119
SRA Experiments39
Protein Sequences439662
Publications
PubMed3
PMC3
Other datasets
BioSample2981
Assembly119
Assembly details:
Assembly levelNumber of Assemblies
27
92
119
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_003248855.1ScaffoldQFPE00000000SAMN07426552
S2_005_003_R3_52
GCA_003240765.1ContigQFNG00000000SAMN07426609
S2_018_000_R3_109
GCA_003241525.1ContigQFQJ00000000SAMN07426520
S2_003_000_R3_20
GCA_003248375.1ContigQFNJ00000000SAMN07426605
S2_018_000_R2_105
GCA_003248585.1ContigQFPC00000000SAMN07426554
S2_006_000_R1_54
GCA_003243215.1ContigQFQK00000000SAMN07426519
S2_003_000_R3_19
GCA_003241215.1ScaffoldQFOL00000000SAMN07426573
S2_009_000_R2_73
GCA_003241355.1ContigQFPL00000000SAMN07426545
S2_005_003_R2_45
GCA_003241075.1ScaffoldQFOE00000000SAMN07426580
S2_012_000_R2_80
GCA_003241485.1ContigQFQD00000000SAMN07426527
S2_005_001_R2_27
GCA_003241695.1ContigQFPN00000000SAMN07426543
S2_005_003_R2_43
GCA_003243425.1ContigQFQP00000000SAMN07426514
S2_003_000_R2_14
GCA_003248635.1ContigQFPH00000000SAMN07426549
S2_005_003_R3_49
GCA_003243265.1ContigQFQN00000000SAMN07426516
S2_003_000_R2_16
GCA_003241205.1ScaffoldQFOK00000000SAMN07426574
S2_009_000_R2_74
GCA_003241545.1ScaffoldQFON00000000SAMN07426571
S2_009_000_R2_71
GCA_003241645.1ContigQFOX00000000SAMN07426560
S2_006_000_R2_60
GCA_003241095.1ContigQFOF00000000SAMN07426579
S2_012_000_R2_79
GCA_003243305.1ContigQFQT00000000SAMN07426510
S2_003_000_R2_10
GCA_005768725.1ContigVAFM00000000SAMN07426606
S2_018_000_R2_106
GCA_003241005.1ContigQFNX00000000SAMN07426589
S2_012_000_R3_89
GCA_005768645.1ScaffoldVAFH00000000SAMN07426521
S2_003_000_R3_21
GCA_003248455.1ScaffoldQFNM00000000SAMN07426602
S2_018_000_R2_102
GCA_003248925.1ContigQFQA00000000SAMN07426530
S2_005_002_R2_30
GCA_003248965.1ContigQFQU00000000SAMN07426509
S2_003_000_R2_9
GCA_003243465.1ContigQFQZ00000000SAMN07426504
S2_003_000_R2_4
GCA_003243455.1ContigQFQS00000000SAMN07426511
S2_003_000_R2_11
GCA_003248805.1ContigQFQY00000000SAMN07426505
S2_003_000_R2_5
GCA_003248755.1ContigQFQW00000000SAMN07426507
S2_003_000_R2_7
GCA_003248465.1ContigQFNO00000000SAMN07426600
S2_018_000_R2_100
GCA_003243445.1ContigQFQQ00000000SAMN07426513
S2_003_000_R2_13
GCA_003248785.1ContigQFOP00000000SAMN07426569
S2_006_000_R3_69
GCA_003248395.1ContigQFNA00000000SAMN07426615
S2_018_000_R3_115
GCA_003243515.1ContigQFRA00000000SAMN07426503
S2_003_000_R1_3
GCA_003241755.1ContigQFPU00000000SAMN07426536
S2_005_003_R1_36
GCA_003240965.1ContigQFNY00000000SAMN07426587
S2_012_000_R3_87
GCA_003243365.1ContigQFPZ00000000SAMN07426531
S2_005_002_R2_31
GCA_005768695.1ContigVAFI00000000SAMN07426558
S2_006_000_R1_58
GCA_003241135.1ContigQFOG00000000SAMN07426578
S2_012_000_R1_78
GCA_003241045.1ScaffoldQFOC00000000SAMN07426582
S2_012_000_R2_82
GCA_003240845.1ContigQFNS00000000SAMN07426596
S2_018_000_R1_96
GCA_003243545.1ScaffoldQFRB00000000SAMN07426502
S2_003_000_R1_2
GCA_003241655.1ContigQFPA00000000SAMN07426556
S2_006_000_R1_56
GCA_003241745.1ScaffoldQFPT00000000SAMN07426537
S2_005_003_R2_37
GCA_003243165.1ContigQFQC00000000SAMN07426528
S2_005_001_R3_28
GCA_003241515.1ScaffoldQFQE00000000SAMN07426526
S2_005_001_R2_26
GCA_004799385.1ContigSSMF00000000SAMN07426566
S2_006_000_R2_66
GCA_003243255.1ContigQFQM00000000SAMN07426517
S2_003_000_R2_17
GCA_003248485.1ScaffoldQFNR00000000SAMN07426597
S2_018_000_R1_97
GCA_003240955.1ContigQFNU00000000SAMN07426593
S2_012_000_R3_93
GCA_003240925.1ContigQFNV00000000SAMN07426592
S2_012_000_R3_92
GCA_005768775.1ContigVAFN00000000SAMN07426617
S2_018_000_R3_117
GCA_003248405.1ScaffoldQFNH00000000SAMN07426608
S2_018_000_R3_108
GCA_003240835.1ContigQFNQ00000000SAMN07426598
S2_018_000_R1_98
GCA_003240705.1ContigQFND00000000SAMN07426612
S2_018_000_R3_112
GCA_003240995.1ScaffoldQFNW00000000SAMN07426591
S2_012_000_R3_91
GCA_003241315.1ContigQFOZ00000000SAMN07426557
S2_006_000_R1_57
GCA_003240615.1ContigQFMY00000000SAMN07426618
S2_018_000_R3_118
GCA_003243275.1ContigQFQR00000000SAMN07426512
S2_003_000_R2_12
GCA_003240775.1ContigQFNI00000000SAMN07426607
S2_018_000_R3_107
GCA_003241555.1ContigQFOQ00000000SAMN07426568
S2_006_000_R2_68
GCA_003241475.1ContigQFQB00000000SAMN07426529
S2_005_002_R2_29
GCA_003241285.1ContigQFOT00000000SAMN07426564
S2_006_000_R2_64
GCA_003240795.1ContigQFNK00000000SAMN07426604
S2_018_000_R2_104
GCA_003248835.1ContigQFPB00000000SAMN07426555
S2_006_000_R1_55
GCA_003248845.1ContigQFPD00000000SAMN07426553
S2_006_000_R1_53
GCA_003248655.1ContigQFPM00000000SAMN07426544
S2_005_003_R2_44
GCA_003248605.1ScaffoldQFPF00000000SAMN07426551
S2_005_003_R3_51
GCA_003243185.1ScaffoldQFQH00000000SAMN07426523
S2_005_001_R1_23
GCA_003241455.1ContigQFPX00000000SAMN07426533
S2_005_002_R2_33
GCA_003243335.1ScaffoldQFRC00000000SAMN07426501
S2_003_000_R1_1
GCA_003240735.1ContigQFNE00000000SAMN07426611
S2_018_000_R3_111
GCA_003240635.1ContigQFMZ00000000SAMN07426616
S2_018_000_R3_116
GCA_005768755.1ContigVAFL00000000SAMN07426594
S2_012_000_R3_94
GCA_003240655.1ContigQFNB00000000SAMN07426614
S2_018_000_R3_114
GCA_003243355.1ScaffoldQFPI00000000SAMN07426548
S2_005_003_R2_48
GCA_003241595.1ContigQFOU00000000SAMN07426563
S2_006_000_R2_63
GCA_003241145.1ContigQFOH00000000SAMN07426577
S2_009_000_R2_77
GCA_003240885.1ContigQFNP00000000SAMN07426599
S2_018_000_R2_99
GCA_003241405.1ContigQFPS00000000SAMN07426538
S2_005_003_R2_38
GCA_003241175.1ScaffoldQFOI00000000SAMN07426576
S2_009_000_R2_76
GCA_003241185.1ContigQFOJ00000000SAMN07426575
S2_009_000_R2_75
GCA_003240695.1ContigQFNC00000000SAMN07426613
S2_018_000_R3_113
GCA_003248675.1ScaffoldQFQG00000000SAMN07426524
S2_005_001_R1_24
GCA_003241385.1ContigQFPO00000000SAMN07426542
S2_005_003_R2_42
GCA_003241785.1ContigQFPW00000000SAMN07426534
S2_005_002_R2_34
GCA_003241055.1ContigQFOD00000000SAMN07426581
S2_012_000_R2_81
GCA_004799365.1ContigSSME00000000SAMN07426586
S2_012_000_R3_86
GCA_003241435.1ContigQFPV00000000SAMN07426535
S2_005_003_R1_35
GCA_003241225.1ScaffoldQFOM00000000SAMN07426572
S2_009_000_R2_72
GCA_003248545.1ContigQFOR00000000SAMN07426567
S2_006_000_R2_67
GCA_003248775.1ContigQFQX00000000SAMN07426506
S2_003_000_R2_6
GCA_003248935.1ContigQFQF00000000SAMN07426525
S2_005_001_R2_25
GCA_003248695.1ContigQFQL00000000SAMN07426518
S2_003_000_R3_18
GCA_003248645.1ScaffoldQFPY00000000SAMN07426532
S2_005_002_R2_32
GCA_003248505.1ContigQFOA00000000SAMN07426584
S2_012_000_R2_84
GCA_003241025.1ScaffoldQFNZ00000000SAMN07426585
S2_012_000_R2_85
GCA_003240755.1ScaffoldQFNF00000000SAMN07426610
S2_018_000_R3_110
GCA_003240855.1ScaffoldQFNN00000000SAMN07426601
S2_018_000_R2_101
GCA_003248515.1ContigQFOB00000000SAMN07426583
S2_012_000_R2_83
GCA_003248385.1ContigQFNL00000000SAMN07426603
S2_018_000_R2_103
GCA_003248735.1ContigQFQV00000000SAMN07426508
S2_003_000_R2_8
GCA_003248865.1ContigQFPK00000000SAMN07426546
S2_005_003_R2_46
GCA_003243195.1ContigQFQI00000000SAMN07426522
S2_005_001_R1_22
GCA_003240625.1ContigQFMX00000000SAMN07426619
S2_018_000_R3_119
GCA_003241685.1ScaffoldQFPJ00000000SAMN07426547
S2_005_003_R2_47
GCA_003241305.1ContigQFOY00000000SAMN07426559
S2_006_000_R1_59
GCA_003241345.1ContigQFPG00000000SAMN07426550
S2_005_003_R3_50
GCA_005768675.1ContigVAFJ00000000SAMN07426588
S2_012_000_R3_88
GCA_003241705.1ContigQFPQ00000000SAMN07426540
S2_005_003_R2_40
GCA_003241275.1ScaffoldQFOO00000000SAMN07426570
S2_009_000_R1_70
GCA_003248565.1ContigQFOV00000000SAMN07426562
S2_006_000_R2_62
GCA_003240915.1ContigQFNT00000000SAMN07426595
S2_012_000_R3_95
GCA_005768745.1ContigVAFK00000000SAMN07426590
S2_012_000_R3_90
GCA_003243385.1ContigQFQO00000000SAMN07426515
S2_003_000_R2_15
GCA_003248915.1ContigQFPR00000000SAMN07426539
S2_005_003_R2_39
GCA_003243375.1ContigQFPP00000000SAMN07426541
S2_005_003_R2_41
GCA_003241585.1ContigQFOS00000000SAMN07426565
S2_006_000_R2_65
GCA_003241635.1ContigQFOW00000000SAMN07426561
S2_006_000_R2_61
SRA Data Details
ParameterValue
Data volume, Gbases465
Data volume, Tbytes0.24

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