Helicobacter cinaedi (ID 474628) - BioProject

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Accession: PRJDB6556 ID: 474628

Helicobacter cinaedi

Genomic analysis of Helicobacter cinaedi

See Genome Information for Helicobacter cinaedi

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9 additional projects are related by organism.

We analyzed the genome sequences of 22 Helicobacter cinaedi strains isolated from blood cultures from patients in a hospital.

Accession	PRJDB6556
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Helicobacter cinaedi[Taxonomy ID: 213] Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter cinaedi
Publications	Gotoh Y et al., "Multi-step genomic dissection of a suspected intra-hospital Helicobacter cinaedi outbreak.", Microb Genom, 2018 Dec;4(12)
Submission	Registration date: 6-Jun-2018 Microbiology, Graduate School of Medical Sciences, Kyushu University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6211
WGS master	25
Genomic DNA	3
SRA Experiments	23
Publications
PubMed	1
PMC	1
Other datasets
BioSample	28
Assembly	28

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

3
25
28

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_003213725.2		1	SAMD00106671	P01D0000	Helicobacter cinaedi
GCA_003214155.2		1	SAMD00106675	P06D0798	Helicobacter cinaedi
GCA_003213825.2		1	SAMD00106672	P03D0629	Helicobacter cinaedi
GCA_003215375.1	BEZK00000000		SAMD00106685	P19D1315	Helicobacter cinaedi
GCA_003215615.1	BEZM00000000		SAMD00106687	CCUG 18818	Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
GCA_003215495.1	BEZL00000000		SAMD00106686	P20D1835	Helicobacter cinaedi
GCA_003215915.1	BEZP00000000		SAMD00106690	P15D1072	Helicobacter cinaedi
GCA_003215825.1	BEZO00000000		SAMD00106689	P02D0213	Helicobacter cinaedi
GCA_003215705.1	BEZN00000000		SAMD00106688	P21D1863	Helicobacter cinaedi
GCA_003216655.1	BGKH00000000		SAMD00116547	PAGU628	Helicobacter cinaedi
GCA_003216555.1	BGKG00000000		SAMD00116548	PAGU1382	Helicobacter cinaedi
GCA_003216475.1	BGKF00000000		SAMD00116546	PAGU617	Helicobacter cinaedi
GCA_003216395.1	BGKE00000000		SAMD00116545	CCUG19504	Helicobacter cinaedi
GCA_003216315.1	BGKD00000000		SAMD00116544	CCUG19503	Helicobacter cinaedi
GCA_003216215.1	BEZS00000000		SAMD00106693	P11D1015	Helicobacter cinaedi
GCA_003216115.1	BEZR00000000		SAMD00106692	P12D0946	Helicobacter cinaedi
GCA_003216015.1	BEZQ00000000		SAMD00106691	P16D1106	Helicobacter cinaedi
GCA_003214035.1	BEYZ00000000		SAMD00106674	P05D0741	Helicobacter cinaedi
GCA_003213915.1	BEYY00000000		SAMD00106673	P04D0736	Helicobacter cinaedi
GCA_003214395.1	BEZC00000000		SAMD00106677	P08D0905	Helicobacter cinaedi
GCA_003214265.1	BEZB00000000		SAMD00106676	P07D0876	Helicobacter cinaedi
GCA_003214885.1	BEZG00000000		SAMD00106681	P13D0979	Helicobacter cinaedi
GCA_003214675.1	BEZE00000000		SAMD00106679	P10D0937	Helicobacter cinaedi
GCA_003214775.1	BEZF00000000		SAMD00106680	P11D0946	Helicobacter cinaedi
GCA_003214515.1	BEZD00000000		SAMD00106678	P09D0927	Helicobacter cinaedi
GCA_003215135.1	BEZI00000000		SAMD00106683	P17D1144	Helicobacter cinaedi
GCA_003215005.1	BEZH00000000		SAMD00106682	P14D1067	Helicobacter cinaedi
GCA_003215255.1	BEZJ00000000		SAMD00106684	P18D1268	Helicobacter cinaedi

SRA Data Details

Parameter	Value
Data volume, Gbases	7
Data volume, Mbytes	4668

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Helicobacter cinaedi

Genomic analysis of Helicobacter cinaedi

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