hot springs metagenome (ID 419931) - BioProject

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Accession: PRJNA419931 ID: 419931

hot springs metagenome

Metagenomic assembled genomes from two thermal pools in the Uzon Caldera, Kamchatka, Russia

In this study we focus on two hydrothermal pools, Arkashin Shurf and Zavarzin Spring, in Uzon Caldera, Kamchatka, Russia that were previously characterized using 16S ribosomal RNA sequencing and geochemical analysis undertaken in Burgess et al. More...

Accession	PRJNA419931
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	hot springs metagenome[Taxonomy ID: 433727] unclassified sequences; metagenomes; ecological metagenomes; hot springs metagenome
Publications	Wilkins LGE et al., "Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia.", Sci Rep, 2019 Feb 28;9(1):3059 Published online: Wilkins L et al., "Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia", Scientific Reports, 2019;9(1)
Submission	Registration date: 9-Jan-2018 UC Berkeley
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	7347
WGS master	35
SRA Experiments	4
Protein Sequences	50837
Publications
PubMed	1
PMC	1
Other datasets
BioSample	40
Assembly	35

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

35
35

Assembly	WGS	BioSample	Taxonomy
GCA_002878135.1	PNIT00000000	SAMN08107308	Aciduliprofundum sp.
GCA_002877875.1	PNIE00000000	SAMN08107324	Caldimicrobium thiodismutans
GCA_002877955.1	PNIL00000000	SAMN08107316	Caldisericum exile
GCA_002878115.1	PNIX00000000	SAMN08107303	Caldisericum exile
GCA_002878225.1	PNJB00000000	SAMN08107299	Caldisphaera sp.
GCA_002878235.1	PNJA00000000	SAMN08107300	Caldisphaera sp.
GCA_002877855.1	PNIA00000000	SAMN08107328	Caldisphaera sp.
GCA_002877795.1	PNHZ00000000	SAMN08107329	Caldisphaera sp.
GCA_002878065.1	PNIN00000000	SAMN08107314	Calditerrivibrio nitroreducens
GCA_002877915.1	PNJE00000000	SAMN08107295	Candidatus Aminicenantes bacterium
GCA_002871235.1	PNIC00000000	SAMN08107326	Candidatus Bathyarchaeota archaeon
GCA_002871255.1	PNIF00000000	SAMN08107322	Candidatus Bathyarchaeota archaeon
GCA_002871245.1	PNIH00000000	SAMN08107320	Candidatus Bathyarchaeota archaeon
GCA_002899815.1	PNIB00000000	SAMN08107327	Candidatus Korarchaeota archaeon
GCA_002877815.1	PNIQ00000000	SAMN08107311	Chloroflexus aggregans
GCA_002877975.1	PNII00000000	SAMN08107319	Desulfurella multipotens
GCA_002878175.1	PNIZ00000000	SAMN08107301	Desulfurella sp.
GCA_002899755.1	POCC00000000	SAMN08107323	Dictyoglomus turgidum
GCA_002871295.1	PNIV00000000	SAMN08107305	Fervidicoccus fontis
GCA_002871215.1	PNIM00000000	SAMN08107315	Fervidicoccus fontis
GCA_002899805.1	POCB00000000	SAMN08107307	Fervidicoccus sp.
GCA_002878215.1	PNJC00000000	SAMN08107298	Hydrogenobaculum sp.
GCA_002877935.1	PNIG00000000	SAMN08107321	Hydrogenobaculum sp.
GCA_002878335.1	PNIP00000000	SAMN08107312	Mesoaciditoga sp.
GCA_002878315.1	PNIW00000000	SAMN08107304	Mesoaciditoga sp.
GCA_002869475.1	PKSC00000000	SAMN08107296	Mucilaginibacter sp.
GCA_002878015.1	PNIJ00000000	SAMN08107318	Mucilaginibacter sp.
GCA_002878195.1	PNJF00000000	SAMN08107294	Nitrososphaera sp.
GCA_002877835.1	PNIR00000000	SAMN08107310	Roseiflexus castenholzii
GCA_002878035.1	PNIU00000000	SAMN08107306	Sulfurihydrogenibium sp.
GCA_002877885.1	PNID00000000	SAMN08107325	Sulfurihydrogenibium sp.
GCA_002877985.1	PNIK00000000	SAMN08107317	Thermodesulfobacterium geofontis
GCA_002878125.1	PNJD00000000	SAMN08107297	Thermodesulfobacterium geofontis
GCA_002878095.1	PNIY00000000	SAMN08107302	Thermodesulfobium narugense
GCA_002878055.1	PNIO00000000	SAMN08107313	Thermodesulfovibrio aggregans

SRA Data Details

Parameter	Value
Data volume, Gbases	9
Data volume, Mbytes	5340

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hot springs metagenome

Metagenomic assembled genomes from two thermal pools in the Uzon Caldera, Kamchatka, Russia

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