metagenome (ID 174530) - BioProject

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Accession: PRJNA174530 ID: 174530

metagenome

Multiple body sites from marine mammals, targeted locus (loci) and metagenome shotgun sequencing

The microbial community composition of dolphins and sea lions was characterized using a 16S rRNA gene-based survey of oral, gastric, rectal, and respiratory samples. More...

Accession	PRJNA174530
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	metagenome[Taxonomy ID: 256318] unclassified sequences; metagenomes; metagenome
Publications (total 3) Less...	Dudek NK et al., "Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome.", Curr Biol, 2017 Dec 18;27(24):3752-3762.e6 More... Dudek NK et al., "Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome.", Curr Biol, 2017 Dec 18;27(24):3752-3762.e6 Bik EM et al., "Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea.", Nat Commun, 2016 Feb 3;7:10516 Published online: Dudek N et al., "Previously uncharacterized rectangular bacterial structures in the dolphin mouth", Nature Communications, 2023;14(1) Less...
Submission	Registration date: 3-Nov-2017 Stanford University School of Medicine
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	15423
WGS master	165
SRA Experiments	474
Protein Sequences	174780
Publications
PubMed	2
PMC	1
Other datasets
BioSample	694
Assembly	165

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

10
7
17

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_018456095.2	JAGYHV000000000	SAMN18995133	bin16	Alcaligenaceae bacterium
GCA_018457235.1	JAGYHK000000000	SAMN18995121	bin4	Arcobacter sp.
GCA_018457325.1	JAGYHJ000000000	SAMN18995120	bin3	Campylobacteraceae bacterium
GCA_018457335.1	JAGYHI000000000	SAMN18995119	bin2	Candidatus Gracilibacteria bacterium
GCA_018456195.1	JAGYHL000000000	SAMN18995122	bin5	Candidatus Gracilibacteria bacterium
GCA_018457205.1	JAGYHN000000000	SAMN18995124	bin7	Corynebacteriaceae bacterium
GCA_018456185.1	JAGYHR000000000	SAMN18995129	bin12	Flavobacteriaceae bacterium
GCA_018457305.1	JAGYHM000000000	SAMN18995123	bin6	Fusobacterium sp.
GCA_018457245.1	JAGYHP000000000	SAMN18995127	bin10	Gammaproteobacteria bacterium
GCA_018456075.1	JAGYHU000000000	SAMN18995132	bin15	Gammaproteobacteria bacterium
GCA_018456065.1	JAGYHX000000000	SAMN18995135	bin18	Gammaproteobacteria bacterium
GCA_018606675.1	JAGYHO000000000	SAMN18995125	bin8	Malasseziomycetes sp.
GCA_018456165.1	JAGYHS000000000	SAMN18995130	bin13	Moraxellaceae bacterium
GCA_018457285.1	JAGYHT000000000	SAMN18995131	bin14	Oceanivirga sp.
GCA_018457225.1	JAGYHW000000000	SAMN18995134	bin17	Pasteurella sp.
GCA_018456245.1	JAGYHQ000000000	SAMN18995128	bin11	Tenacibaculum sp.
GCA_018606665.1	JAHCSF000000000	SAMN19014081	-	oral metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	99
Data volume, Mbytes	62077

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metagenome

Multiple body sites from marine mammals, targeted locus (loci) and metagenome shotgun sequencing

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