ID 355910 - BioProject

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Accession: PRJNA355910 ID: 355910

ESBL-producing Enterobacteriaceae from Pretoria, South Africa. Genome sequencing and assembly

Clinical Enterobacteriaceae that were isolated from hospitals in Pretoria, South Africa and found to be resistant to extended-spectrum beta lactamases (penicillins and cephalosporins) were subjected to whole genome sequencing to characterize their resistance mechanisms and molecular epidemiology.

Accession	PRJNA355910
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 1-Dec-2016 University of Pretoria
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	28457
WGS master	78
Protein Sequences	374610
Other datasets
BioSample	78
Assembly	78

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

3
75
78

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002417535.1	NXKF00000000	SAMN06106878	CF004	Citrobacter freundii
GCA_002417525.1	NXKE00000000	SAMN06106877	CF003	Citrobacter freundii
GCA_002416525.1	NXIL00000000	SAMN06106832	ST-231:Ec009	Enterobacter hormaechei
GCA_002416545.1	NXIK00000000	SAMN06106831	ST-459:Ec001	Enterobacter hormaechei
GCA_002416535.1	NXIM00000000	SAMN06106833	ST-231:Ec010	Enterobacter hormaechei
GCA_002417315.1	NXJN00000000	SAMN06106860	ST-234:K063	Enterobacter hormaechei
GCA_002417005.1	NXJF00000000	SAMN06106852	EC015	Enterobacter hormaechei
GCA_002416795.1	NXJH00000000	SAMN06106854	KOO6	Enterobacter hormaechei
GCA_002510085.1	NXKO00000000	SAMN06106888	K130	Enterobacter hormaechei
GCA_002417225.1	NXKG00000000	SAMN06106879	ST-6:CF006	Enterococcus faecalis
GCA_002416685.1	NXIX00000000	SAMN06106844	ST-18:K073	Enterococcus faecium
GCA_002528845.1	NXLG00000000	SAMN06106906	ST-617:E019	Escherichia coli
GCA_002528825.1	NXLF00000000	SAMN06106904	ST-131:E005	Escherichia coli
GCA_002416935.1	NXJD00000000	SAMN06106850	ST-131:E056	Escherichia coli
GCA_002416955.1	NXJC00000000	SAMN06106849	ST-998:E035	Escherichia coli
GCA_002416915.1	NXIZ00000000	SAMN06106846	E003	Escherichia coli
GCA_002416875.1	NXIT00000000	SAMN06106840	ST-131:E063	Escherichia coli
GCA_002416865.1	NXIR00000000	SAMN06106838	ST-73:E053	Escherichia coli
GCA_002416845.1	NXIP00000000	SAMN06106836	ST-95:E040	Escherichia coli
GCA_002416555.1	NXIN00000000	SAMN06106834	ST-131:E013	Escherichia coli
GCA_002416625.1	NXIS00000000	SAMN06106839	ST-665:E057	Escherichia coli
GCA_002416785.1	NXIO00000000	SAMN06106835	ST-131:E021	Escherichia coli
GCA_002416765.1	NXJE00000000	SAMN06106851	ST-131:E062	Escherichia coli
GCA_002416715.1	NXJB00000000	SAMN06106847	ST-617:E020	Escherichia coli
GCA_002417555.1	NXKJ00000000	SAMN06106882	ST-648:K075	Escherichia coli
GCA_002510165.1	NXKR00000000	SAMN06106889	ST-131:E011	Escherichia coli
GCA_002510175.1	NXKS00000000	SAMN06106891	ST-410:K011	Escherichia coli
GCA_002510125.1	NXKQ00000000	SAMN06106890	K091	Escherichia coli
GCA_002528925.1	NXLJ00000000	SAMN06106908	ST-131:E060	Escherichia coli
GCA_002528895.1	NXLI00000000	SAMN06106907	ST-131:E058	Escherichia coli
GCA_002528885.1	NXLH00000000	SAMN06106905	ST-131:E009	Escherichia coli
GCA_002504065.1	NXLA00000000	SAMN06106899	K123	Klebsiella pneumoniae
GCA_002510095.1	NXKP00000000	SAMN06106887	ST-14:K118	Klebsiella pneumoniae
GCA_002510145.1	NXKN00000000	SAMN06106886	ST-152:K131	Klebsiella pneumoniae
GCA_002510065.1	NXKM00000000	SAMN06106885	ST-643:K129	Klebsiella pneumoniae
GCA_002510015.1	NXKW00000000	SAMN06106895	ST-234:K054	Klebsiella pneumoniae
GCA_002510025.1	NXKX00000000	SAMN06106896	ST-234:K062	Klebsiella pneumoniae
GCA_002510005.1	NXKY00000000	SAMN06106897	ST-152:K069	Klebsiella pneumoniae
GCA_002509985.1	NXKV00000000	SAMN06106894	ST-234:K053	Klebsiella pneumoniae
GCA_002528835.1	NXLE00000000	SAMN06106903	ST-101:K169	Klebsiella pneumoniae
GCA_002522945.1	NXKZ00000000	SAMN06106898	ST-17:K120	Klebsiella pneumoniae
GCA_002522955.1	NXLB00000000	SAMN06106900	ST-101:K126	Klebsiella pneumoniae
GCA_002510215.1	NXKU00000000	SAMN06106893	ST-1552:K038	Klebsiella pneumoniae
GCA_002510205.1	NXKT00000000	SAMN06106892	ST-607:K014	Klebsiella pneumoniae
GCA_002417545.1	NXKL00000000	SAMN06106884	ST-15:K104	Klebsiella pneumoniae
GCA_002417455.1	NXKB00000000	SAMN06106874	ST-39:K145	Klebsiella pneumoniae
GCA_002417365.1	NXJQ00000000	SAMN06106864	K094	Klebsiella pneumoniae
GCA_002417435.1	NXKA00000000	SAMN06106873	ST-15:K125	Klebsiella pneumoniae
GCA_002417385.1	NXJY00000000	SAMN06106871	ST-234:K080	Klebsiella pneumoniae
GCA_002417395.1	NXJT00000000	SAMN06106866	ST-152:K110	Klebsiella pneumoniae
GCA_002417375.1	NXJS00000000	SAMN06106865	ST-15:K087	Klebsiella pneumoniae
GCA_002417325.1	NXJP00000000	SAMN06106861	ST-1552:K086	Klebsiella pneumoniae
GCA_002416705.1	NXJA00000000	SAMN06106848	ST-15:E041	Klebsiella pneumoniae
GCA_002416695.1	NXIY00000000	SAMN06106845	ST-39:K0179	Klebsiella pneumoniae
GCA_002416615.1	NXIU00000000	SAMN06106841	ST-152:K021	Klebsiella pneumoniae
GCA_002416655.1	NXIW00000000	SAMN06106843	ST-1552:K089	Klebsiella pneumoniae
GCA_002416895.1	NXIV00000000	SAMN06106842	ST-1414:K058	Klebsiella pneumoniae
GCA_002417015.1	NXJK00000000	SAMN06106857	ST-152:K051	Klebsiella pneumoniae
GCA_002416985.1	NXJI00000000	SAMN06106855	ST-152:KO25	Klebsiella pneumoniae
GCA_002417305.1	NXJM00000000	SAMN06106859	ST-1552:K061	Klebsiella pneumoniae
GCA_002417255.1	NXKI00000000	SAMN06106881	ST-25:K161	Klebsiella pneumoniae
GCA_002417245.1	NXKK00000000	SAMN06106883	ST-101:K085	Klebsiella pneumoniae
GCA_002417145.1	NXJV00000000	SAMN06106868	ST-1414:K141	Klebsiella pneumoniae
GCA_002417175.1	NXJZ00000000	SAMN06106872	ST-152:K181	Klebsiella pneumoniae
GCA_002417165.1	NXJX00000000	SAMN06106869	ST-152:K071	Klebsiella pneumoniae
GCA_002417155.1	NXJW00000000	SAMN06106870	ST-1552:K077	Klebsiella pneumoniae
GCA_002417105.1	NXJU00000000	SAMN06106867	ST-1552:K117	Klebsiella pneumoniae
GCA_002417075.1	NXJO00000000	SAMN06106862	ST-1414:K078	Klebsiella pneumoniae
GCA_002417085.1	NXJR00000000	SAMN06106863	ST-323:K090	Klebsiella pneumoniae
GCA_002416995.1	NXJJ00000000	SAMN06106856	ST-152:K031	Klebsiella pneumoniae
GCA_002417065.1	NXJL00000000	SAMN06106858	ST-234:K059	Klebsiella pneumoniae
GCA_002528795.1	NXLD00000000	SAMN06106902	ST-1414:K146	Klebsiella pneumoniae
GCA_002528785.1	NXLC00000000	SAMN06106901	ST-182:K137	Klebsiella pneumoniae
GCA_002416775.1	NXJG00000000	SAMN06106853	ST-1791:KOO1	Klebsiella variicola
GCA_002417235.1	NXKH00000000	SAMN06106880	M006	Morganella morganii
GCA_002416605.1	NXIQ00000000	SAMN06106837	E042	Morganella morganii
GCA_002417445.1	NXKC00000000	SAMN06106876	PM005	Proteus mirabilis
GCA_002417505.1	NXKD00000000	SAMN06106875	PR002	Providencia rettgeri

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ESBL-producing Enterobacteriaceae from Pretoria, South Africa. Genome sequencing and assembly

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