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Accession: PRJNA355910 ID: 355910

ESBL-producing Enterobacteriaceae from Pretoria, South Africa. Genome sequencing and assembly

Clinical Enterobacteriaceae that were isolated from hospitals in Pretoria, South Africa and found to be resistant to extended-spectrum beta lactamases (penicillins and cephalosporins) were subjected to whole genome sequencing to characterize their resistance mechanisms and molecular epidemiology.
AccessionPRJNA355910
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 1-Dec-2016
University of Pretoria
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)28457
WGS master78
Protein Sequences374610
Other datasets
BioSample78
Assembly78
Genome assemblies, organelles and plasmids:
Assembly GCA_002416525.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIL00000000
Assembly GCA_002416535.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIM00000000
Assembly GCA_002416545.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIK00000000
Assembly GCA_002416555.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIN00000000
Assembly GCA_002416605.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIQ00000000
Assembly GCA_002416615.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIU00000000
Assembly GCA_002416625.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIS00000000
Assembly GCA_002416655.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIW00000000
Assembly GCA_002416685.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIX00000000
Assembly GCA_002416695.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIY00000000
Assembly GCA_002416705.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJA00000000
Assembly GCA_002416715.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJB00000000
Assembly GCA_002416765.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJE00000000
Assembly GCA_002416775.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJG00000000
Assembly GCA_002416785.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIO00000000
Assembly GCA_002416795.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJH00000000
Assembly GCA_002416845.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIP00000000
Assembly GCA_002416865.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIR00000000
Assembly GCA_002416875.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIT00000000
Assembly GCA_002416895.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIV00000000
Assembly GCA_002416915.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXIZ00000000
Assembly GCA_002416935.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJD00000000
Assembly GCA_002416955.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJC00000000
Assembly GCA_002416985.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJI00000000
Assembly GCA_002416995.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJJ00000000
Assembly GCA_002417005.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJF00000000
Assembly GCA_002417015.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJK00000000
Assembly GCA_002417065.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJL00000000
Assembly GCA_002417075.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJO00000000
Assembly GCA_002417085.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJR00000000
Assembly GCA_002417105.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJU00000000
Assembly GCA_002417145.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJV00000000
Assembly GCA_002417155.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJW00000000
Assembly GCA_002417165.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJX00000000
Assembly GCA_002417175.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJZ00000000
Assembly GCA_002417225.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKG00000000
Assembly GCA_002417235.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKH00000000
Assembly GCA_002417245.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKK00000000
Assembly GCA_002417255.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKI00000000
Assembly GCA_002417305.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJM00000000
Assembly GCA_002417315.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJN00000000
Assembly GCA_002417325.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJP00000000
Assembly GCA_002417365.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJQ00000000
Assembly GCA_002417375.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJS00000000
Assembly GCA_002417385.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJY00000000
Assembly GCA_002417395.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXJT00000000
Assembly GCA_002417435.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKA00000000
Assembly GCA_002417445.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKC00000000
Assembly GCA_002417455.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKB00000000
Assembly GCA_002417505.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKD00000000
Assembly GCA_002417525.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKE00000000
Assembly GCA_002417535.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKF00000000
Assembly GCA_002417545.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKL00000000
Assembly GCA_002417555.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKJ00000000
Assembly GCA_002504065.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLA00000000
Assembly GCA_002509985.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKV00000000
Assembly GCA_002510005.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKY00000000
Assembly GCA_002510015.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKW00000000
Assembly GCA_002510025.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKX00000000
Assembly GCA_002510065.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKM00000000
Assembly GCA_002510085.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKO00000000
Assembly GCA_002510095.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKP00000000
Assembly GCA_002510125.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKQ00000000
Assembly GCA_002510145.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKN00000000
Assembly GCA_002510165.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKR00000000
Assembly GCA_002510175.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKS00000000
Assembly GCA_002510205.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKT00000000
Assembly GCA_002510215.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKU00000000
Assembly GCA_002522945.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXKZ00000000
Assembly GCA_002522955.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLB00000000
Assembly GCA_002528785.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLC00000000
Assembly GCA_002528795.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLD00000000
Assembly GCA_002528825.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLF00000000
Assembly GCA_002528835.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLE00000000
Assembly GCA_002528845.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLG00000000
Assembly GCA_002528885.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLH00000000
Assembly GCA_002528895.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLI00000000
Assembly GCA_002528925.1 :
NameGenBank
Whole Genome Shotgun AssemblyNXLJ00000000

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