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Accession: PRJNA184698 ID: 184698

sediment metagenome

Microbial communities from contaminated river sediment (the River Calcaieu, LA, USA) Metagenome

A total of five communities (DP, DPB, B, B33d, and B43d metagenomes) were sampled. More...

Accession	PRJNA184698
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	sediment metagenome[Taxonomy ID: 749907] unclassified sequences; metagenomes; ecological metagenomes; sediment metagenome
Grants	"Disinfectant-Induced Antibiotic Resistance: Relevance, Mechanisms and Practical Considerations" (Grant ID 0967130, National Science Foundation)
Submission	Registration date: 25-Jul-2014 Georgia Institute of Technology
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2472
WGS master	9
SRA Experiments	69
Other datasets
BioSample	73
Assembly	9

Assembly details:

Assembly level

Number of Assemblies

Contig

9
9

Assembly	Level	WGS	BioSample	Strain	Taxonomy
GCA_002192685.1		MTLH00000000	SAMN06009452	DP_1	Achromobacter denitrificans
GCA_002192705.1		MTLI00000000	SAMN06009453	DPB_1	Achromobacter xylosoxidans
GCA_002192695.1		MTLG00000000	SAMN06009451	B_1	Achromobacter xylosoxidans
GCA_002192675.1		MTLJ00000000	SAMN06009454	DPB_2	Citrobacter freundii
GCA_002192755.1		MTLK00000000	SAMN06009455	DPB_3	Klebsiella michiganensis
GCA_002192775.1		MTLM00000000	SAMN06009457	DPB_4	Pseudomonas aeruginosa
GCA_002192765.1		MTLL00000000	SAMN06009456	DP_4	Pseudomonas aeruginosa
GCA_000733635.1		JNFO00000000	SAMN02798138	DPB	Pseudomonas nitroreducens
GCA_000733615.1		JNFN00000000	SAMN02798137	B	Pseudomonas nitroreducens

SRA Data Details

Parameter	Value
Data volume, Gbases	99
Data volume, Mbytes	53070

Supplemental Content

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SRA
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WGS master
Link to WGS master record(s)

LinkOut to external resources

2654587543: Pseudomonas nitroreducens B [Integrated Microbial Genomes]
2654587543: Pseudomonas nitroreducens B
Integrated Microbial Genomes
2648501913: Pseudomonas nitroreducens DPB [Integrated Microbial Genomes]
2648501913: Pseudomonas nitroreducens DPB
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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sediment metagenome
sediment metagenome
Microbial communities from contaminated river sediment (the River Calcaieu, LA, USA) Metagenome

BioProject
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