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Accession: PRJNA321606 ID: 321606

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
Investigation of Horizontal Gene Transfer of Pathogenicity Islands in Escherichia coli using Next-Generation Sequencing
AccessionPRJNA321606
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 12-Jun-2017
Max von Pettenkofer-Institute
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)52862
WGS master72
SRA Experiments72
Protein Sequences344754
Other datasets
BioSample72
Assembly72
Assembly details:
Assembly levelNumber of Assemblies
72
72
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_002191135.1ContigLYYB00000000SAMN05010842
ECOR51
GCA_002191015.1ContigLYCC00000000SAMN05007689
ECOR46
GCA_002191055.1ContigLYCI00000000SAMN05007539
ECOR40
GCA_002191105.1ContigLYCD00000000SAMN05007654
ECOR45
GCA_002191075.1ContigLYCE00000000SAMN05007550
ECOR44
GCA_002191035.1ContigLYBY00000000SAMN05010821
ECOR50
GCA_002191025.1ContigLYCA00000000SAMN05010819
ECOR48
GCA_002190945.1ContigLYCB00000000SAMN05007900
ECOR47
GCA_002190975.1ContigLYBZ00000000SAMN05010820
ECOR49
GCA_002190955.1ContigLYCF00000000SAMN05007549
ECOR43
GCA_002190875.1ContigLYCJ00000000SAMN05007378
ECOR39
GCA_002190935.1ContigLYCG00000000SAMN05007547
ECOR42
GCA_002190885.1ContigLYCH00000000SAMN05007541
ECOR41
GCA_002190835.1ContigLYAA00000000SAMN05004647
ECOR37
GCA_002190865.1ContigLXZZ00000000SAMN05004757
ECOR38
GCA_002190825.1ContigLYBO00000000SAMN05004646
ECOR36
GCA_002190815.1ContigLYAB00000000SAMN05004608
ECOR35
GCA_002190785.1ContigLYAC00000000SAMN05004606
ECOR34
GCA_002190705.1ContigLYAG00000000SAMN05004391
ECOR30
GCA_002190775.1ContigLYAD00000000SAMN05004557
ECOR33
GCA_002190745.1ContigLYAE00000000SAMN05004556
ECOR32
GCA_002190715.1ContigLYAF00000000SAMN05004435
ECOR31
GCA_002190685.1ContigLYAH00000000SAMN05004371
ECOR29
GCA_002190675.1ContigLYAI00000000SAMN05004357
ECOR28
GCA_002190645.1ContigLYAJ00000000SAMN05004331
ECOR27
GCA_002190625.1ContigLYAK00000000SAMN05004314
ECOR26
GCA_002190605.1ContigLYAL00000000SAMN05004301
ECOR25
GCA_002190595.1ContigLYAM00000000SAMN05004300
ECOR24
GCA_002190555.1ContigLYAN00000000SAMN05004288
ECOR23
GCA_002190545.1ContigLYAP00000000SAMN05004259
ECOR21
GCA_002190535.1ContigLYAO00000000SAMN05004273
ECOR22
GCA_002190515.1ContigLYAQ00000000SAMN05004248
ECOR20
GCA_002190475.1ContigLYAR00000000SAMN05004066
ECOR19
GCA_002190455.1ContigLYAT00000000SAMN05004027
ECOR17
GCA_002190465.1ContigLYAS00000000SAMN05004036
ECOR18
GCA_002190355.1ContigLYAY00000000SAMN05003856
ECOR12
GCA_002190435.1ContigLYAU00000000SAMN05004025
ECOR16
GCA_002190395.1ContigLYAV00000000SAMN05003867
ECOR15
GCA_002190375.1ContigLYAW00000000SAMN05003863
ECOR14
GCA_002190365.1ContigLYAX00000000SAMN05003858
ECOR13
GCA_002190295.1ContigLYBA00000000SAMN05003850
ECOR10
GCA_002190305.1ContigLYAZ00000000SAMN05003853
ECOR11
GCA_002190285.1ContigLYBB00000000SAMN05003837
ECOR09
GCA_002190275.1ContigLYBC00000000SAMN05003836
ECOR08
GCA_002190225.1ContigLYBE00000000SAMN05003834
ECOR06
GCA_002190245.1ContigLYBD00000000SAMN05003835
ECOR07
GCA_002190165.1ContigLYBG00000000SAMN05003830
ECOR04
GCA_002190205.1ContigLYBF00000000SAMN05003833
ECOR05
GCA_002190095.1ContigLYDJ00000000SAMN05017800
ECOR72
GCA_002190155.1ContigLYBH00000000SAMN05003829
ECOR03
GCA_002190145.1ContigLYBI00000000SAMN05003828
ECOR02
GCA_002190085.1ContigLYDI00000000SAMN05017798
ECOR71
GCA_002190105.1ContigLYBJ00000000SAMN05003827
ECOR01
GCA_002190075.1ContigLYDH00000000SAMN05017797
ECOR70
GCA_002189985.1ContigLYDE00000000SAMN05017774
ECOR66
GCA_002190025.1ContigLYDF00000000SAMN05017777
ECOR68
GCA_002190035.1ContigLYDG00000000SAMN05017796
ECOR69
GCA_002190005.1ContigLYDN00000000SAMN05017776
ECOR67
GCA_002189955.1ContigLYCZ00000000SAMN05017739
ECOR59
GCA_002189945.1ContigLYDC00000000SAMN05017771
ECOR64
GCA_002189935.1ContigLYDD00000000SAMN05017773
ECOR65
GCA_002189895.1ContigLYDL00000000SAMN05017750
ECOR62
GCA_002189905.1ContigLYDM00000000SAMN05017752
ECOR63
GCA_002189875.1ContigLYDB00000000SAMN05017749
ECOR61
GCA_002189825.1ContigLYCY00000000SAMN05017738
ECOR58
GCA_002189815.1ContigLYCX00000000SAMN05017708
ECOR57
GCA_002189835.1ContigLYDA00000000SAMN05017740
ECOR60
GCA_002189765.1ContigLYDK00000000SAMN05017706
ECOR56
GCA_002189755.1ContigLYCT00000000SAMN05017701
ECOR52
GCA_002189745.1ContigLYCU00000000SAMN05017703
ECOR53
GCA_002189735.1ContigLYCW00000000SAMN05017705
ECOR55
GCA_002189715.1ContigLYCV00000000SAMN05017704
ECOR54
SRA Data Details
ParameterValue
Data volume, Gbases82
Data volume, Mbytes59526

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