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Accession: PRJNA183850 ID: 183850

Salmonella enterica

GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center

See Genome Information for Salmonella enterica
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
AccessionPRJNA183850
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica[Taxonomy ID: 28901]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
SubmissionRegistration date: 25-Jan-2016
New York State Dept. of Health - Wadsworth Center
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)10480
WGS master2006
Genomic DNA4
SRA Experiments2180
Protein Sequences436325
Other datasets
BioSample2214
Assembly2008
Assembly details:
Assembly levelNumber of Assemblies
2
4
2002
2008
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_006145955.1ContigAAESBI000000000
SAMN10393042
ULBRA-SF319
GCA_006145915.1ContigAAESBL000000000
SAMN10392971
ULBRA-SF315
GCA_006145855.1ContigAAESDG000000000
SAMN08387131
RS-SF12037/13
GCA_006145795.1ContigAAESDD000000000
SAMN08386766
RS-SF03474/11
GCA_006145615.1ContigAAESDS000000000
SAMN08387145
RS-SF11293/10
GCA_006145595.1ContigAAESDK000000000
SAMN08387170
RS-SF11089/13
GCA_006145575.1ContigAAESDV000000000
SAMN08387064
ULBRA-SA155
GCA_006144915.1ContigAAESBR000000000
SAMN10393013
ULBRA-SF321
GCA_006144925.1ContigAAESBK000000000
SAMN10393019
ULBRA-SF320
GCA_006144695.1ContigAAESDE000000000
SAMN08387048
UFRGS-SA050
GCA_006144565.1ContigAAESBA000000000
SAMN10393017
ULBRA-SF299
GCA_006144495.1ContigAAESDH000000000
SAMN08386824
UFRGS-SA008
GCA_006144355.1ContigAAESAZ000000000
SAMN10393049
ULBRA-SF297
GCA_006144225.1ContigAAESBE000000000
SAMN10393020
ULBRA-SF298
GCA_006144215.1ContigAAESBH000000000
SAMN10392968
ULBRA-SF316
GCA_006144155.1ContigAAESBJ000000000
SAMN10392966
ULBRA-SF318
GCA_006144095.1ContigAAESDL000000000
SAMN08386744
UFRGS-SA033
GCA_006144015.1ContigAAESDF000000000
SAMN08387047
UFRGS-SA052
GCA_006143995.1ContigAAESBT000000000
SAMN08386801
UFRGS-SA049
GCA_006143815.1ContigAAESCB000000000
SAMN08386796
RS-SF11368/12
GCA_006143795.1ContigAAESDJ000000000
SAMN08386752
UFRGS-SA035
GCA_006143355.1ContigAAERYR000000000
SAMN08387176
RS-SF16364/13
GCA_006143315.1ContigAAERYV000000000
SAMN08387122
RS-SF18098/13
GCA_006141425.1ContigAAERYO000000000
SAMN08387148
RS-SF05524/10
GCA_006141255.1ContigAAERYP000000000
SAMN08386797
UFRGS-SA051
GCA_006212055.1ContigAAEWWP000000000
SAMN08387132
ULBRA-SA230
GCA_006212025.1ContigAAEWWR000000000
SAMN08387106
ULBRA-SA174
GCA_006211885.1ContigAAEWWT000000000
SAMN08387102
ULBRA-SA225
GCA_006210705.1ContigAAEWTS000000000
SAMN08387096
ULBRA-SA180
GCA_006214105.1ContigAAEXAK000000000
SAMN10393163
ULBRA-SA357
GCA_006213715.1ContigAAEXAD000000000
SAMN10393156
ULBRA-SA390
GCA_006213585.1ContigAAEXAI000000000
SAMN10393143
ULBRA-SA379
GCA_006213545.1ContigAAEXAG000000000
SAMN10393153
ULBRA-SA391
GCA_006213325.1ContigAAEWYO000000000
SAMN10393133
ULBRA-SA344
GCA_006213165.1ContigAAEWYG000000000
SAMN10393147
ULBRA-SA378
GCA_006213145.1ContigAAEWYN000000000
SAMN10393160
ULBRA-SA356
GCA_006212985.1ContigAAEWYQ000000000
SAMN10393197
ULBRA-SA381
GCA_006212705.1ContigAAEWYE000000000
SAMN08387128
ULBRA-SA186
GCA_006212645.1ContigAAEWXV000000000
SAMN08387139
ULBRA-SA248
GCA_006212625.1ContigAAEWXK000000000
SAMN08387114
ULBRA-SA235
GCA_006212605.1ContigAAEWXU000000000
SAMN08387121
ULBRA-SA242
GCA_006212585.1ContigAAEWXN000000000
SAMN08387116
ULBRA-SA237
GCA_006212505.1ContigAAEWYA000000000
SAMN08386975
ULBRA-SA244
GCA_006212485.1ContigAAEWXL000000000
SAMN08386976
ULBRA-SA243
GCA_006212465.1ContigAAEWXQ000000000
SAMN08387104
ULBRA-SA227
GCA_006158665.1ContigAAESZN000000000
SAMN01902271
NY_BAC0600004286
GCA_006158405.1ContigAAESXZ000000000
SAMN02777834
NY-N153
GCA_006158205.1ContigAAESYD000000000
SAMN02777835
NY-N154
GCA_006085115.1ContigAAENUN000000000
SAMN02989106
CFSAN023447
GCA_006077035.1ContigAAENFL000000000
SAMN08386972
RS-SF01341/12
GCA_006077015.1ContigAAENFM000000000
SAMN08387099
RS-SF05140/14
GCA_006076995.1ContigAAENFG000000000
SAMN08387051
UFRGS-SA045
GCA_006076975.1ContigAAENFW000000000
SAMN08386757
UFRGS-SA038
GCA_006076955.1ContigAAENFP000000000
SAMN08386799
UFRGS-SA048
GCA_006076915.1ContigAAENFJ000000000
SAMN08386748
UFRGS-SA031
GCA_006076935.1ContigAAENFF000000000
SAMN08386751
UFRGS-SA011
GCA_006076895.1ContigAAENFC000000000
SAMN08386755
UFRGS-SA009
GCA_006076875.1ContigAAENGB000000000
SAMN10393014
ULBRA-SF312
GCA_006076855.1ContigAAENFQ000000000
SAMN08386759
UFRGS-SA037
GCA_006076835.1ContigAAENFO000000000
SAMN08386736
SSSE-65
GCA_006076795.1ContigAAENFD000000000
SAMN08386750
UFRGS-SA034
GCA_006076595.1ContigAAENFX000000000
SAMN10392965
ULBRA-SF309
GCA_006076575.1ContigAAENFY000000000
SAMN10393015
ULBRA-SF322
GCA_006076535.1ContigAAENGI000000000
SAMN10392969
ULBRA-SF310
GCA_006076465.1ContigAAENFK000000000
SAMN08387124
RS-SF01156/13
GCA_006076395.1ContigAAENFN000000000
SAMN08386964
RS-SF15595/10
GCA_006076375.1ContigAAENGA000000000
SAMN08386769
RS-SF03089/11
GCA_006076355.1ContigAAENFR000000000
SAMN10393046
ULBRA-SF305
GCA_006075615.1ContigAAENCT000000000
SAMN08387137
ULBRA-SA053
GCA_006075475.1ContigAAENCX000000000
SAMN08387076
ULBRA-SA062
GCA_006075115.1ContigAAENCD000000000
SAMN08387150
RS-SF00434/10
GCA_006075055.1ContigAAENCF000000000
SAMN08387141
ULBRA-SA052
GCA_006074615.1ContigAAENAR000000000
SAMN08386771
RS-SF00998/12
GCA_006073695.1ContigAAENAC000000000
SAMN08387146
RS-SF03456/10
GCA_006073655.1ContigAAEMZY000000000
SAMN08387194
ULBRA-SA078
GCA_006073495.1ContigAAEMZW000000000
SAMN08387082
ULBRA-SA255
GCA_006073395.1ContigAAEMZU000000000
SAMN08386776
UFRGS-SA042
GCA_006079495.1ContigAAENGL000000000
SAMN10392962
ULBRA-SF313
GCA_006079475.1ContigAAENGG000000000
SAMN10393041
ULBRA-SF294
GCA_006003085.1ContigAAEHVA000000000
SAMN10392964
ULBRA-SF308
GCA_006002565.1ContigAAEHTY000000000
SAMN10392970
ULBRA-SF314
GCA_006002485.1ContigAAEHTT000000000
SAMN10392963
ULBRA-SF311
GCA_006002425.1ContigAAEHTI000000000
SAMN10393069
ULBRA-SF303
GCA_006002405.1ContigAAEHTO000000000
SAMN10393068
ULBRA-SF304
GCA_006002385.1ContigAAEHTJ000000000
SAMN10393035
ULBRA-SF300
GCA_006002325.1ContigAAEHTD000000000
SAMN10393034
ULBRA-SF323
GCA_006002305.1ContigAAEHTF000000000
SAMN08387093
RS-SF05209/14
GCA_006002285.1ContigAAEHSW000000000
SAMN08387171
RS-SF10794/13
GCA_006002245.1ContigAAEHTC000000000
SAMN08386767
RS-SF13568/11
GCA_006002265.1ContigAAEHTA000000000
SAMN08386777
RS-SF01352/12
GCA_006002185.1ContigAAEHSY000000000
SAMN08386768
RS-SF15875/10
GCA_006002165.1ContigAAEHSV000000000
SAMN08387050
UFRGS-SA046
GCA_006002145.1ContigAAEHSZ000000000
SAMN08386844
RS-SF09687/13
GCA_006002125.1ContigAAEHTK000000000
SAMN10393071
ULBRA-SF296
GCA_006002085.1ContigAAEHTE000000000
SAMN10393031
ULBRA-SF293
GCA_006002065.1ContigAAEHTB000000000
SAMN10393076
ULBRA-SF295
GCA_006002045.1ContigAAEHSX000000000
SAMN08386761
UFRGS-SA040
GCA_006002005.1ContigAAEHSU000000000
SAMN08386773
RS-SF00991/12
GCA_006001965.1ContigAAEHTL000000000
SAMN10393072
ULBRA-SF306
GCA_006001945.1ContigAAEHTM000000000
SAMN10392967
ULBRA-SF307
GCA_006001845.1ContigAAEHST000000000
SAMN08386746
UFRGS-SA030
GCA_006001825.1ContigAAEHSS000000000
SAMN08386775
UFRGS-SA041
GCA_006001805.1ContigAAEHSR000000000
SAMN08386753
UFRGS-SA010
GCA_006001785.1ContigAAEHSQ000000000
SAMN08386763
UFRGS-SA039
GCA_006001765.1ContigAAEHSL000000000
SAMN08386778
UFRGS-SA043
GCA_006001745.1ContigAAEHSP000000000
SAMN08386839
UFRGS-SA007
GCA_005999385.1ContigAAEHNQ000000000
SAMN08387118
ULBRA-SA009
GCA_005999325.1ContigAAEHNL000000000
SAMN08387173
ULBRA-SA068
GCA_005998245.1ContigAAEHLF000000000
SAMN09630290
NY89812649
GCA_005998125.1ContigAAEHNJ000000000
SAMN08387059
ULBRA-SA215
GCA_005998105.1ContigAAEHNP000000000
SAMN08387183
ULBRA-SA210
GCA_005998045.1ContigAAEHNO000000000
SAMN08387181
ULBRA-SA209
GCA_005997965.1ContigAAEHNK000000000
SAMN08386965
RS-SF00022/10
GCA_005997705.1ContigAAEHNI000000000
SAMN08387077
ULBRA-SA066
GCA_005997665.1ContigAAEHNM000000000
SAMN08386998
ULBRA-SA253
GCA_005997645.1ContigAAEHNN000000000
SAMN08387081
ULBRA-SA256
GCA_005997605.1ContigAAEHKH000000000
SAMN08387180
RS-SF09692/13
GCA_005997045.1ContigAAEHKD000000000
SAMN08387149
ULBRA-SA065
GCA_005996745.1ContigAAEHKL000000000
SAMN08386741
UFRGS-SA032
GCA_005996665.1ContigAAEHKK000000000
SAMN08387089
RS-SF01623/15
GCA_005933935.1ContigAAECTB000000000
SAMN02298222
ATCC BAA-664
GCA_005899285.1ContigAAEAJH000000000
SAMN03838173
POR1-0138
GCA_005899245.1ContigAAEAJD000000000
SAMN03838167
POR1-0122
GCA_005898505.1ContigAAEAHP000000000
SAMN02983190
POR1-0047
GCA_005902545.1ContigAAEAPK000000000
SAMN08387013
SSSE-26
GCA_005902505.1ContigAAEAPI000000000
SAMN08386811
UFRGS-SA006
GCA_005902485.1ContigAAEAPN000000000
SAMN08386783
UFRGS-SA003
GCA_005902445.1ContigAAEAPG000000000
SAMN08386781
UFRGS-SA002
GCA_005902455.1ContigAAEAPF000000000
SAMN08386840
UFRGS-SA004
GCA_005902025.1ContigAAEANW000000000
SAMN08387071
ULBRA-SA258
GCA_005902005.1ContigAAEAOD000000000
SAMN08387066
ULBRA-SA269
GCA_005900465.1ContigAAEALI000000000
SAMN08387085
ULBRA-SA271
GCA_005900445.1ContigAAEALU000000000
SAMN08386810
UFRGS-SA005
GCA_006215125.1ContigAAEXAX000000000
SAMN08386882
RS-SF02560/13
GCA_006215065.1ContigAAEXAW000000000
SAMN08386833
SSSE-01
GCA_006215005.1ContigAAEXAP000000000
SAMN08387019
SSSE-03
GCA_006214985.1ContigAAEXAO000000000
SAMN10393121
ULBRA-SA364
GCA_006214225.1ContigAAEXAR000000000
SAMN10393136
ULBRA-SA372
GCA_006214145.1ContigAAEXAV000000000
SAMN10393186
ULBRA-SA355
GCA_006240335.1ContigAAEXWF000000000
SAMN02777836
NY-N155
GCA_006240315.1ContigAAEXWE000000000
SAMN02777837
NY-N156
GCA_006292355.1ContigAAFBSK000000000
SAMN10393130
ULBRA-SA345
GCA_006292295.1ContigAAFBQX000000000
SAMN08386963
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GCA_006291755.1ContigAAFBPP000000000
SAMN08387101
ULBRA-SA226
GCA_006293215.1ContigAAFBRJ000000000
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ULBRA-SA181
GCA_006293175.1ContigAAFBSI000000000
SAMN10393129
ULBRA-SA359
GCA_006293155.1ContigAAFBQZ000000000
SAMN08387058
ULBRA-SA170
GCA_006293345.1ContigAAFBRA000000000
SAMN08387147
ULBRA-SA252
GCA_006292375.1ContigAAFBRL000000000
SAMN08387094
ULBRA-SA198
GCA_006294535.1ContigAAFBRB000000000
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ULBRA-SA185
GCA_006294455.1ContigAAFBRG000000000
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ULBRA-SA231
GCA_006294435.1ContigAAFBRE000000000
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ULBRA-SA197
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ULBRA-SA361
GCA_006294805.1ContigAAFBSF000000000
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ULBRA-SA365
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ULBRA-SA350
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ULBRA-SA363
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SAMN10393016
ULBRA-SF328
GCA_006294715.1ContigAAFBSB000000000
SAMN08386745
SSSE-59
GCA_006294695.1ContigAAFBSG000000000
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ULBRA-SA389
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ULBRA-SA366
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ULBRA-SA371
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ULBRA-SF343
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UFRGS-SA024
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SSSE-17
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SSSE-136
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ULBRA-SA217
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GCA_003876695.1ContigRSXG00000000
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RS-SF03447/10
GCA_004192725.1ContigAAACKD000000000
SAMN02777729
NY-32413
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SAMN02983200
POR1-0057
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POR1-0059
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NY-N13154
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IDR2100096246-01
GCA_020866305.1ContigABDVJP000000000
SAMN23007933
IDR2100096245-01
GCA_006952825.2Complete genomeSAMN02989073
CFSAN023357
GCA_021566075.1ContigABETGA000000000
SAMN25225895
IDR2100108223-01
GCA_021566295.1ContigABETGM000000000
SAMN25225884
IDR2100108124-01
GCA_021566155.1ContigABETFZ000000000
SAMN25225894
IDR2100108222-01
GCA_021566355.1ContigABETHC000000000
SAMN25225898
IDR2100108226-01
GCA_021566435.1ContigABETHD000000000
SAMN25225891
IDR2100108219-01
GCA_021566375.1ContigABETHK000000000
SAMN25225885
IDR2100108133-01
GCA_021566455.1ContigABETGO000000000
SAMN25225896
IDR2100108224-01
GCA_021566595.1ContigABETGP000000000
SAMN25225889
IDR2100108150-01
GCA_021566575.1ContigABETGQ000000000
SAMN25225890
IDR2100108153-01
GCA_021566555.1ContigABETGN000000000
SAMN25225887
IDR2100108144-01
GCA_021568035.1ContigABETJO000000000
SAMN25225892
IDR2100108220-01
GCA_021567915.1ContigABETJK000000000
SAMN25225893
IDR2100108221-01
GCA_021567895.1ContigABETJI000000000
SAMN25225888
IDR2100108147-01
GCA_021567875.1ContigABETJJ000000000
SAMN25225886
IDR2100108139-01
GCA_021581295.1ContigABETOO000000000
SAMN25225897
IDR2100108225-01
GCA_019270815.1ContigABBJCC000000000
SAMN20247397
IDR2100071965-01
GCA_019270585.1ContigABBJBM000000000
SAMN20247393
IDR2100071954-01
GCA_019270515.1ContigABBJBL000000000
SAMN20247402
IDR2100071974-01
GCA_019270485.1ContigABBJBK000000000
SAMN20247392
IDR2100071953-01
GCA_019270415.1ContigABBJBJ000000000
SAMN20247391
IDR2100071950-01
GCA_019270395.1ContigABBJBI000000000
SAMN20247401
IDR2100071973-01
GCA_019322965.1ContigABBLGM000000000
SAMN20327859
IDR2100073331-01
GCA_019322925.1ContigABBLGJ000000000
SAMN20327860
IDR2100073332-01
GCA_019322775.1ContigABBLGE000000000
SAMN20327855
IDR2100073320-01
GCA_019322695.1ContigABBLGH000000000
SAMN20327862
IDR2100073334-01
GCA_019322635.1ContigABBLGF000000000
SAMN20327858
IDR2100073330-01
GCA_019322275.1ContigABBLFZ000000000
SAMN20327863
IDR2100073335-01
GCA_019322255.1ContigABBLFU000000000
SAMN20327856
IDR2100073324-01
GCA_019322235.1ContigABBLFX000000000
SAMN20327861
IDR2100073333-01
GCA_019322215.1ContigABBLFW000000000
SAMN20327857
IDR2100073328-01
GCA_019322195.1ContigABBLGB000000000
SAMN20327864
IDR2100073336-01
GCA_019322175.1ContigABBLGC000000000
SAMN20327854
IDR2100069011-01
GCA_019270975.1ContigABBJCA000000000
SAMN20247398
IDR2100071968-01
GCA_019270915.1ContigABBJCB000000000
SAMN20247399
IDR2100071971-01
GCA_019270895.1ContigABBJCD000000000
SAMN20247400
IDR2100071972-01
GCA_019270845.1ContigABBJBY000000000
SAMN20247396
IDR2100071963-01
GCA_019270835.1ContigABBJBX000000000
SAMN20247394
IDR2100071959-01
GCA_019270775.1ContigABBJBZ000000000
SAMN20247395
IDR2100071961-01
GCA_019197495.1ContigABBGGU000000000
SAMN20090292
E1298-87
GCA_019197455.1ContigABBGGY000000000
SAMN20090293
E1299-87
GCA_019197405.1ContigABBGGW000000000
SAMN20090294
E1300-87
GCA_019197395.1ContigABBGGR000000000
SAMN20090295
E1301-87
GCA_019197375.1ContigABBGGQ000000000
SAMN20090291
E1297-87
GCA_019197355.1ContigABBGGP000000000
SAMN20090290
E1296-87
GCA_019197335.1ContigABBGGO000000000
SAMN20090289
E1295-87
GCA_019197255.1ContigABBGGN000000000
SAMN20090288
E1293-87
GCA_019729855.1ContigABCBSQ000000000
SAMN20868062
IDR2100079844-01
GCA_019729575.1ContigABCBRU000000000
SAMN20868065
IDR2100079851-01
GCA_019729915.1ContigABCBST000000000
SAMN20868063
IDR2100079847-01
GCA_019730075.1ContigABCBSR000000000
SAMN20868060
IDR2100079841-01
GCA_019730055.1ContigABCBSS000000000
SAMN20868057
IDR2100079835-01
GCA_019730195.1ContigABCBSZ000000000
SAMN20868066
IDR2100079853-01
GCA_019728675.1ContigABCBPX000000000
SAMN20868061
IDR2100079842-01
GCA_019729115.1ContigABCBQV000000000
SAMN20868064
IDR2100079848-01
GCA_019729055.1ContigABCBQO000000000
SAMN20868068
IDR2100079856-01
GCA_019729035.1ContigABCBQK000000000
SAMN20868059
IDR2100079839-01
GCA_019728995.1ContigABCBQJ000000000
SAMN20868067
IDR2100079854-01
GCA_019728975.1ContigABCBQM000000000
SAMN20868058
IDR2100079838-01
SRA Data Details
ParameterValue
Data volume, Gbases940
Data volume, Tbytes0.52

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