Francisella tularensis subsp. holarctica (ID 285145) - BioProject

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Accession: PRJNA285145 ID: 285145

Francisella tularensis subsp. holarctica

Genomic epidemiological analysis of the clonal expansion of F.tularensis in continental Western Europe

See Genome Information for Francisella tularensis

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This project is a component of the Global phylogeography of F. tularensis subspecies holarctica

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6 additional projects are components of the Global phylogeography of F. tularensis subspecies holarctica.

174 additional projects are related by organism.

Genomic epidemiology of F.tularensis in continental Western Europe

Accession	PRJNA285145
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Francisella tularensis subsp. holarctica[Taxonomy ID: 119857] Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella; Francisella tularensis; Francisella tularensis subsp. holarctica
Publications	Dwibedi C et al., "Long-range dispersal moved Francisella tularensis into Western Europe from the East.", Microb Genom, 2016 Dec;2(12):e000100
Submission	Registration date: 19-Apr-2017 FOI Swedish Defence Research Agency
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6964
WGS master	51
Protein Sequences	83179
Publications
PubMed	1
PMC	1
Other datasets
BioSample	58
Assembly	51

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

17
34
51

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002100715.1	MRJV00000000	SAMN03773912	FSC026	Francisella tularensis subsp. holarctica
GCA_002100705.1	MRJU00000000	SAMN03773913	FSC027	Francisella tularensis subsp. holarctica
GCA_002100685.1	MRJM00000000	SAMN03774150	FSC599	Francisella tularensis subsp. holarctica
GCA_002100665.1	MRJN00000000	SAMN03774138	FSC555	Francisella tularensis subsp. holarctica
GCA_002100645.1	MRJP00000000	SAMN03774110	FSC455	Francisella tularensis subsp. holarctica
GCA_002100625.1	MRJW00000000	SAMN03773906	FDC434	Francisella tularensis subsp. holarctica
GCA_002100605.1	MRKA00000000	SAMN03773902	FDC430	Francisella tularensis subsp. holarctica
GCA_002100585.1	MRJR00000000	SAMN03773917	FSC031	Francisella tularensis subsp. holarctica
GCA_002100565.1	MRJY00000000	SAMN03773904	FDC432	Francisella tularensis subsp. holarctica
GCA_002100535.1	MRKC00000000	SAMN03773900	FDC428	Francisella tularensis subsp. holarctica
GCA_002100525.1	MRKD00000000	SAMN03773899	FDC427	Francisella tularensis subsp. holarctica
GCA_002100505.1	MRKK00000000	SAMN03773892	FDC420	Francisella tularensis subsp. holarctica
GCA_002100485.1	MRKM00000000	SAMN03773890	FDC418	Francisella tularensis subsp. holarctica
GCA_002100455.1	MRKR00000000	SAMN03773885	FDC412	Francisella tularensis subsp. holarctica
GCA_002100445.1	MRKZ00000000	SAMN03773839	FDC113	Francisella tularensis subsp. holarctica
GCA_002100415.1	MRKT00000000	SAMN03773859	FDC338	Francisella tularensis subsp. holarctica
GCA_002100405.1	MRKU00000000	SAMN03773858	FDC310	Francisella tularensis subsp. holarctica
GCA_002100375.1	MRLG00000000	SAMN03773729	F0775	Francisella tularensis subsp. holarctica
GCA_002100365.1	MRLH00000000	SAMN03773728	F0732	Francisella tularensis subsp. holarctica
GCA_002100335.1	MRLF00000000	SAMN03773730	F0777	Francisella tularensis subsp. holarctica
GCA_002100325.1	MRLB00000000	SAMN03773837	FDC095	Francisella tularensis subsp. holarctica
GCA_002100185.1	MRLE00000000	SAMN03773732	F0781	Francisella tularensis subsp. holarctica
GCA_002100275.1	MRJO00000000	SAMN03774111	FSC456	Francisella tularensis subsp. holarctica
GCA_002100265.1	MRJS00000000	SAMN03773915	FSC029	Francisella tularensis subsp. holarctica
GCA_002100255.1	MRJQ00000000	SAMN03773988	FSC247	Francisella tularensis subsp. holarctica
GCA_002100245.1	MRJT00000000	SAMN03773914	FSC028	Francisella tularensis subsp. holarctica
GCA_002100175.1	MRLK00000000	SAMN03773721	F0295	Francisella tularensis subsp. holarctica
GCA_002100195.1	MRLI00000000	SAMN03773725	F0624	Francisella tularensis subsp. holarctica
GCA_002100165.1	MRLJ00000000	SAMN03773724	F0608	Francisella tularensis subsp. holarctica
GCA_002101185.1	MRLD00000000	SAMN03773734	F0783	Francisella tularensis subsp. holarctica
GCA_002101165.1	MRLC00000000	SAMN03773735	F0784	Francisella tularensis subsp. holarctica
GCA_002101125.1	MRLA00000000	SAMN03773838	FDC099	Francisella tularensis subsp. holarctica
GCA_002101105.1	MRKY00000000	SAMN03773854	FDC300	Francisella tularensis subsp. holarctica
GCA_002101095.1	MRKX00000000	SAMN03773855	FDC304	Francisella tularensis subsp. holarctica
GCA_002101085.1	MRKW00000000	SAMN03773856	FDC305	Francisella tularensis subsp. holarctica
GCA_002101045.1	MRKV00000000	SAMN03773857	FDC306	Francisella tularensis subsp. holarctica
GCA_002101035.1	MRKS00000000	SAMN03773884	FDC411	Francisella tularensis subsp. holarctica
GCA_002101015.1	MRKQ00000000	SAMN03773886	FDC413	Francisella tularensis subsp. holarctica
GCA_002101005.1	MRKP00000000	SAMN03773887	FDC415	Francisella tularensis subsp. holarctica
GCA_002100955.1	MRKO00000000	SAMN03773888	FDC416	Francisella tularensis subsp. holarctica
GCA_002100945.1	MRKL00000000	SAMN03773891	FDC419	Francisella tularensis subsp. holarctica
GCA_002100935.1	MRKN00000000	SAMN03773889	FDC417	Francisella tularensis subsp. holarctica
GCA_002100925.1	MRKJ00000000	SAMN03773893	FDC421	Francisella tularensis subsp. holarctica
GCA_002100875.1	MRKI00000000	SAMN03773894	FDC422	Francisella tularensis subsp. holarctica
GCA_002100865.1	MRKF00000000	SAMN03773897	FDC425	Francisella tularensis subsp. holarctica
GCA_002100855.1	MRKG00000000	SAMN03773896	FDC424	Francisella tularensis subsp. holarctica
GCA_002100845.1	MRKH00000000	SAMN03773895	FDC423	Francisella tularensis subsp. holarctica
GCA_002100795.1	MRKB00000000	SAMN03773901	FDC429	Francisella tularensis subsp. holarctica
GCA_002100785.1	MRJX00000000	SAMN03773905	FDC433	Francisella tularensis subsp. holarctica
GCA_002100775.1	MRJZ00000000	SAMN03773903	FDC431	Francisella tularensis subsp. holarctica
GCA_002100765.1	MRKE00000000	SAMN03773898	FDC426	Francisella tularensis subsp. holarctica

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Francisella tularensis subsp. holarctica

Genomic epidemiological analysis of the clonal expansion of F.tularensis in continental Western Europe

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