Yersinia ruckeri (ID 310959) - BioProject

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Accession: PRJNA310959 ID: 310959

Yersinia ruckeri

Yersinia ruckeri Genome sequencing and assembly

See Genome Information for Yersinia ruckeri

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22 additional projects are related by organism.

This project explores the evolution and diversity of Yersinia ruckeri in Tasmania, Australia isolated from salmonid fish between 1987 and 2014

Accession	PRJNA310959
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Yersinia ruckeri[Taxonomy ID: 29486] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia ruckeri
Publications	Barnes AC et al., "Whole genome analysis of Yersinia ruckeri isolated over 27 years in Australia and New Zealand reveals geographical endemism over multiple lineages and recent evolution under host selection.", Microb Genom, 2016 Nov;2(11):e000095
Submission	Registration date: 17-Nov-2016 The University of Queensland
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4029
WGS master	50
Genomic DNA	1
SRA Experiments	96
Protein Sequences	166717
Publications
PubMed	1
PMC	1
Other datasets
BioSample	51
Assembly	51

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
50
51

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002192595.1		1	SAMN03287980	QMA0440	Yersinia ruckeri
GCA_001883765.1	MDZP00000000		SAMN04320391	90/0961-C9	Yersinia ruckeri
GCA_001883755.1	MDZR00000000		SAMN04320393	91/4311 A1	Yersinia ruckeri
GCA_001883745.1	MDZQ00000000		SAMN04320392	90/4316	Yersinia ruckeri
GCA_001883615.1	MEAP00000000		SAMN04320417	05/0285-1K	Yersinia ruckeri
GCA_001883605.1	MEAO00000000		SAMN04320416	04/2640-8k	Yersinia ruckeri
GCA_001883575.1	MEAN00000000		SAMN04320415	04/1779	Yersinia ruckeri
GCA_001883565.1	MEAM00000000		SAMN04320414	04/1749	Yersinia ruckeri
GCA_001883525.1	MEAL00000000		SAMN04320413	Mar-05	Yersinia ruckeri
GCA_001883535.1	MEAK00000000		SAMN04320412	Feb-00	Yersinia ruckeri
GCA_001883495.1	MEAJ00000000		SAMN04320411	Feb-68	Yersinia ruckeri
GCA_001883485.1	MEAI00000000		SAMN04320410	02/0981-4br	Yersinia ruckeri
GCA_001883435.1	MEAH00000000		SAMN04320409	02/0972-2br	Yersinia ruckeri
GCA_001883425.1	MEAG00000000		SAMN04320408	01/0298	Yersinia ruckeri
GCA_001883405.1	MEAE00000000		SAMN04320406	00/2994	Yersinia ruckeri
GCA_001883415.1	MEAF00000000		SAMN04320407	01/0230-7	Yersinia ruckeri
GCA_001883365.1	MEAD00000000		SAMN04320405	00/1793-k2	Yersinia ruckeri
GCA_001883345.1	MEAA00000000		SAMN04320401	97/0226-1 vc	Yersinia ruckeri
GCA_001883335.1	MDZW00000000		SAMN04320398	95/4881-1	Yersinia ruckeri
GCA_001883325.1	MEAC00000000		SAMN04320404	00/1445	Yersinia ruckeri
GCA_001883265.1	MDZZ00000000		SAMN04320402	97/1152-1	Yersinia ruckeri
GCA_001883275.1	MEAB00000000		SAMN04320403	00/0652-K3	Yersinia ruckeri
GCA_001883255.1	MDZY00000000		SAMN04320400	96/5134-k	Yersinia ruckeri
GCA_001883245.1	MDZX00000000		SAMN04320399	95/6654-1	Yersinia ruckeri
GCA_001883225.1	MEBV00000000		SAMN05200560	AHL4	Yersinia ruckeri
GCA_001883195.1	MEBX00000000		SAMN05200558	AHL2	Yersinia ruckeri
GCA_001883185.1	MEBY00000000		SAMN05200557	AHL1	Yersinia ruckeri
GCA_001883155.1	MEBZ00000000		SAMN04320427	14/0125-1k	Yersinia ruckeri
GCA_001883145.1	MECA00000000		SAMN04320426	12/3871-3K	Yersinia ruckeri
GCA_001883105.1	MECF00000000		SAMN04320421	07/3828-6E	Yersinia ruckeri
GCA_001883115.1	MECB00000000		SAMN04320425	11/4666-4k	Yersinia ruckeri
GCA_001883065.1	MECI00000000		SAMN04320418	05/0297-5eye	Yersinia ruckeri
GCA_001883075.1	MECG00000000		SAMN04320420	07/3642-5K-b	Yersinia ruckeri
GCA_001883035.1	MEBS00000000		SAMN05200563	AHL7	Yersinia ruckeri
GCA_001883025.1	MEBT00000000		SAMN05200562	AHL6	Yersinia ruckeri
GCA_001882995.1	MEBU00000000		SAMN05200561	AHL5	Yersinia ruckeri
GCA_001882975.1	MEBW00000000		SAMN05200559	AHL3	Yersinia ruckeri
GCA_001882955.1	MECC00000000		SAMN04320424	11/4175-3k	Yersinia ruckeri
GCA_001882945.1	MECD00000000		SAMN04320423	09/0217-5k	Yersinia ruckeri
GCA_001882925.1	MECE00000000		SAMN04320422	08/0188-3K	Yersinia ruckeri
GCA_001882895.1	MECH00000000		SAMN04320419	07/3342-1k	Yersinia ruckeri
GCA_001882465.1	MDZV00000000		SAMN04320397	93/5839-1	Yersinia ruckeri
GCA_001882715.1	MDZU00000000		SAMN04320396	93/1038-1	Yersinia ruckeri
GCA_001882675.1	MDZS00000000		SAMN04320394	91/4316	Yersinia ruckeri
GCA_001882625.1	MDZT00000000		SAMN04320395	92/5354-1	Yersinia ruckeri
GCA_001880475.1	MDZN00000000		SAMN04320389	89/3717-10	Yersinia ruckeri
GCA_001880465.1	MDZJ00000000		SAMN04320385	87/3421-SP	Yersinia ruckeri
GCA_001880435.1	MDZO00000000		SAMN04320390	89/4243	Yersinia ruckeri
GCA_001880425.1	MDZM00000000		SAMN04320388	88/4281-4	Yersinia ruckeri
GCA_001880355.1	MDZL00000000		SAMN04320387	88/3873	Yersinia ruckeri
GCA_001880365.1	MDZK00000000		SAMN04320386	88/3837	Yersinia ruckeri

SRA Data Details

Parameter	Value
Data volume, Gbases	102
Data volume, Mbytes	67407

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Yersinia ruckeri

Yersinia ruckeri Genome sequencing and assembly

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