marine metagenome (ID 318731) - BioProject

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Accession: PRJNA318731 ID: 318731

marine metagenome

particle-associated bacteria from the Mediterranean Sea

In these experiments Mediterranean seawater was enriched with a specific particulate matter, after two weeks of growth under ecologically relevant conditions, microbial DNA was extracted for metagenomic sequencing

Accession	PRJNA318731
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	marine metagenome[Taxonomy ID: 408172] unclassified sequences; metagenomes; ecological metagenomes; marine metagenome
Publications	López-Pérez M et al., "Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea.", Front Microbiol, 2016;7:996
Submission	Registration date: 10-Nov-2016 University Miguel Hernandez
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	668
WGS master	12
Genomic DNA	1
SRA Experiments	5
Protein Sequences	33470
Publications
PubMed	1
PMC	1
Other datasets
BioSample	18
Assembly	13

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

12
12

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_001874255.1	MPDC00000000	SAMN05219281	MedPE-SWcel	Alphaproteobacteria bacterium MedPE-SWcel
GCA_001874305.1	MPCU00000000	SAMN05219210	MedPE-SWde	Bacteriovorax sp. MedPE-SWde
GCA_001874265.1	MPDD00000000	SAMN05219313	MedPE-SWsnd-G1	Bacteroidetes bacterium MedPE-SWsnd-G1
GCA_001874335.1	MPDE00000000	SAMN05219315	MedPE-SWsnd-G2	Bacteroidetes bacterium MedPE-SWsnd-G2
GCA_001874165.1	MPCV00000000	SAMN05219205	MedPE-SWsnd	Crocinitomix sp. MedPE-SWsnd
GCA_001874325.1	MPCW00000000	SAMN05219212	MedPE-SWcel	Flavobacterium sp. MedPE-SWcel
GCA_001874365.1	MPDF00000000	SAMN05219439	MedPE	Gammaproteobacteria bacterium MedPE
GCA_001874145.1	MPCX00000000	SAMN05219213	MedPE-SW	Lacinutrix sp. MedPE-SW
GCA_001874225.1	MPCY00000000	SAMN05219214	MedPE-SW	Roseobacter sp. MedPE-SW
GCA_001874245.1	MPCZ00000000	SAMN05219215	MedPE-SWchi	Roseobacter sp. MedPE-SWchi
GCA_001874205.1	MPDA00000000	SAMN05219217	MedPE-SWde	Roseobacter sp. MedPE-SWde
GCA_001874155.1	MPDB00000000	SAMN05219218	MedPE-SWchi	Vibrio sp. MedPE-SWchi

SRA Data Details

Parameter	Value
Data volume, Gbases	10
Data volume, Mbytes	6938

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marine metagenome

particle-associated bacteria from the Mediterranean Sea

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