symbiont metagenome (ID 322176) - BioProject

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Accession: PRJNA322176 ID: 322176

symbiont metagenome

Symbiont metagenomic assembly from the marine invertebrate Bugula neritina

Our objective was to implement shotgun metagenomic and metatranscriptomic sequencing to recover and characterize the genome of the uncultured, bryostatin-producing endosymbiont, Ca. More...

Accession	PRJNA322176
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	symbiont metagenome[Taxonomy ID: 410662] unclassified sequences; metagenomes; organismal metagenomes; symbiont metagenome
Publications	Miller IJ et al., "Single sample resolution of rare microbial dark matter in a marine invertebrate metagenome.", Sci Rep, 2016 Sep 29;6:34362 Miller IJ et al., "Lack of Overt Genome Reduction in the Bryostatin-Producing Bryozoan Symbiont "Candidatus Endobugula sertula".", Appl Environ Microbiol, 2016 Nov 15;82(22):6573-6583
Grants	"Genomic and Transcriptomic Analyses of an Unculturable Marine Bacterial Symbiont" (Grant ID NA, Thomas F. and Kate Miller Jeffress Memorial Trust)
Submission	Registration date: 13-Sep-2016 University of Wisconsin - Madison
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1135
WGS master	7
Genomic DNA	1
SRA Experiments	13
Protein Sequences	20459
Publications
PubMed	2
PMC	2
Other datasets
BioSample	10
Assembly	8

Assembly details:

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Assembly level

Number of Assemblies

1
6
1
8

Assembly	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_001723645.1	MDLC00000000		SAMN03766367	AB1-4	Candidatus Endobugula sertula
GCA_001730015.1	MDLA00000000		SAMN03766363	AB1-2	Chromatiales bacterium (ex Bugula neritina AB1)
GCA_001729985.1	MDLD00000000		SAMN03766369	AB1-5	Endozoicomonas sp. (ex Bugula neritina AB1)
GCA_001729995.1	MDKZ00000000		SAMN03766361	AB1-1	Flavobacteriaceae bacterium (ex Bugula neritina AB1)
GCA_001730085.1	MDLB00000000		SAMN03766366	AB1-3	PVC group bacterium (ex Bugula neritina AB1)
GCA_001730095.1	MDLF00000000		SAMN03766454	AB1-7	Rhodobacteraceae bacterium (ex Bugula neritina AB1)
GCA_001730065.1	MDLE00000000		SAMN03766371	AB1-6	Rickettsiales bacterium (ex Bugula neritina AB1)
GCA_001729625.1		1	SAMN03766451	AB1-8	bacterium AB1

SRA Data Details

Parameter	Value
Data volume, Gbases	144
Data volume, Mbytes	89681

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symbiont metagenome

Symbiont metagenomic assembly from the marine invertebrate Bugula neritina

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