Listeria monocytogenes (ID 329415) - BioProject

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Accession: PRJNA329415 ID: 329415

Listeria monocytogenes

Genotypes associated with Listeria monocytogenes food-chain isolates displaying impaired or enhanced tolerances to cold, salt, acid, and desiccation stress

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Genome assemblies of draft whole genome sequences of 166 Listeria monocytogenes isolates which were characterized for levels of tolerance to cold, salt, acid, and dessiccation stress.

Accession	PRJNA329415
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Listeria monocytogenes[Taxonomy ID: 1639] Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria; Listeria monocytogenes
Grants	"Elucidation of genetic and physiological factors contributing to rapid cold adaptation and growth of L. monocytogenes - a road to improved control" (Grant ID FSC-12-030, Alberta Innovates Bio Solutions)
Submission	Registration date: 23-Aug-2016 University of British Columbia
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4430
WGS master	166
SRA Experiments	166
Protein Sequences	482336
Other datasets
BioSample	167
Assembly	166

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

166
166

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001708675.1	MDEU00000000	SAMN05410577	Lm23	Listeria monocytogenes
GCA_001708915.1	MDEX00000000	SAMN05410585	Lm53	Listeria monocytogenes
GCA_001708875.1	MDEW00000000	SAMN05410582	Lm44	Listeria monocytogenes
GCA_001708865.1	MDEY00000000	SAMN05410588	Lm70	Listeria monocytogenes
GCA_001708845.1	MDFF00000000	SAMN05410692	OCF14	Listeria monocytogenes
GCA_001708835.1	MDFD00000000	SAMN05410646	Lm93	Listeria monocytogenes
GCA_001708775.1	MDFE00000000	SAMN05410648	Lm99	Listeria monocytogenes
GCA_001708795.1	MDFC00000000	SAMN05410640	Lm90	Listeria monocytogenes
GCA_001708765.1	MDFA00000000	SAMN05410633	Lm79	Listeria monocytogenes
GCA_001708755.1	MDEZ00000000	SAMN05410590	Lm76	Listeria monocytogenes
GCA_001708705.1	MDFB00000000	SAMN05410636	Lm87	Listeria monocytogenes
GCA_001708685.1	MDEV00000000	SAMN05410353	Lm4	Listeria monocytogenes
GCA_001712415.1	MDOY00000000	SAMN05410696	OCF61	Listeria monocytogenes
GCA_001712405.1	MDNA00000000	SAMN05410837	A59	Listeria monocytogenes
GCA_001712375.1	MDQA00000000	SAMN05410713	Lm222	Listeria monocytogenes
GCA_001712365.1	MDPZ00000000	SAMN05410714	Lm223	Listeria monocytogenes
GCA_001712345.1	MDQJ00000000	SAMN05410832	C4	Listeria monocytogenes
GCA_001712305.1	MDNC00000000	SAMN05410767	A57	Listeria monocytogenes
GCA_001712295.1	MDND00000000	SAMN05410785	A560	Listeria monocytogenes
GCA_001712275.1	MDMZ00000000	SAMN05410794	A60	Listeria monocytogenes
GCA_001712265.1	MDMU00000000	SAMN05410686	Lm117	Listeria monocytogenes
GCA_001712205.1	MDMV00000000	SAMN05410685	Lm116	Listeria monocytogenes
GCA_001712215.1	MDMY00000000	SAMN05410745	A9	Listeria monocytogenes
GCA_001712195.1	MDNF00000000	SAMN05410787	A557	Listeria monocytogenes
GCA_001712185.1	MDNE00000000	SAMN05410809	A559	Listeria monocytogenes
GCA_001712155.1	MDMW00000000	SAMN05410684	Lm115	Listeria monocytogenes
GCA_001712115.1	MDMS00000000	SAMN05410688	Lm133	Listeria monocytogenes
GCA_001712135.1	MDMX00000000	SAMN05410683	Lm112	Listeria monocytogenes
GCA_001712105.1	MDNG00000000	SAMN05410819	A555	Listeria monocytogenes
GCA_001712085.1	MDNT00000000	SAMN05410828	A528	Listeria monocytogenes
GCA_001712035.1	MDNI00000000	SAMN05410817	A550-1	Listeria monocytogenes
GCA_001712045.1	MDMT00000000	SAMN05410687	Lm119	Listeria monocytogenes
GCA_001712025.1	MDNR00000000	SAMN05410812	A535	Listeria monocytogenes
GCA_001711995.1	MDNS00000000	SAMN05410811	A531	Listeria monocytogenes
GCA_001711985.1	MDNH00000000	SAMN05410818	A552	Listeria monocytogenes
GCA_001711915.1	MDNU00000000	SAMN05410776	A524	Listeria monocytogenes
GCA_001711945.1	MDNN00000000	SAMN05410839	A54	Listeria monocytogenes
GCA_001711935.1	MDNW00000000	SAMN05410773	A517	Listeria monocytogenes
GCA_001711905.1	MDNX00000000	SAMN05410805	A514	Listeria monocytogenes
GCA_001711885.1	MDNV00000000	SAMN05410775	A521-3	Listeria monocytogenes
GCA_001711865.1	MDNM00000000	SAMN05410781	A540	Listeria monocytogenes
GCA_001711835.1	MDNK00000000	SAMN05410833	A546	Listeria monocytogenes
GCA_001711815.1	MDNP00000000	SAMN05410829	A537	Listeria monocytogenes
GCA_001711805.1	MDNQ00000000	SAMN05410780	A536	Listeria monocytogenes
GCA_001711785.1	MDNO00000000	SAMN05410813	A538	Listeria monocytogenes
GCA_001711745.1	MDON00000000	SAMN05410798	A36	Listeria monocytogenes
GCA_001711725.1	MDOE00000000	SAMN05410806	A500	Listeria monocytogenes
GCA_001711735.1	MDOF00000000	SAMN05410795	A49	Listeria monocytogenes
GCA_001711695.1	MDOG00000000	SAMN05410799	A46	Listeria monocytogenes
GCA_001711685.1	MDNZ00000000	SAMN05410826	A509	Listeria monocytogenes
GCA_001711635.1	MDNB00000000	SAMN05410766	A58	Listeria monocytogenes
GCA_001711645.1	MDOB00000000	SAMN05256774	A507	Listeria monocytogenes
GCA_001711625.1	MDNL00000000	SAMN05410782	A544	Listeria monocytogenes
GCA_001711605.1	MDNJ00000000	SAMN05410800	A55	Listeria monocytogenes
GCA_001711575.1	MDOO00000000	SAMN05410763	A35	Listeria monocytogenes
GCA_001711565.1	MDOM00000000	SAMN05410764	A37	Listeria monocytogenes
GCA_001711535.1	MDOR00000000	SAMN05410792	A28	Listeria monocytogenes
GCA_001711525.1	MDOQ00000000	SAMN05410740	A3	Listeria monocytogenes
GCA_001711505.1	MDOH00000000	SAMN05410824	A45	Listeria monocytogenes
GCA_001711475.1	MDOI00000000	SAMN05410797	A41	Listeria monocytogenes
GCA_001711465.1	MDOK00000000	SAMN05410820	A4	Listeria monocytogenes
GCA_001711435.1	MDOJ00000000	SAMN05410838	A40	Listeria monocytogenes
GCA_001711425.1	MDOZ00000000	SAMN05410693	OCF45	Listeria monocytogenes
GCA_001711385.1	MDPM00000000	SAMN05410581	Lm41	Listeria monocytogenes
GCA_001711395.1	MDOP00000000	SAMN05410755	A30	Listeria monocytogenes
GCA_001711355.1	MDOL00000000	SAMN05410796	A38	Listeria monocytogenes
GCA_001711345.1	MDOS00000000	SAMN05410836	A23	Listeria monocytogenes
GCA_001711325.1	MDQC00000000	SAMN05410710	Lm220	Listeria monocytogenes
GCA_001711295.1	MDPS00000000	SAMN05410727	Lm232	Listeria monocytogenes
GCA_001711285.1	MDPG00000000	SAMN05410634	Lm84	Listeria monocytogenes
GCA_001711245.1	MDQB00000000	SAMN05410711	Lm221	Listeria monocytogenes
GCA_001711255.1	MDPH00000000	SAMN05410631	Lm78	Listeria monocytogenes
GCA_001711215.1	MDPI00000000	SAMN05410629	Lm77	Listeria monocytogenes
GCA_001711195.1	MDOW00000000	SAMN05410769	A146	Listeria monocytogenes
GCA_001711185.1	MDPR00000000	SAMN05410736	Lm234	Listeria monocytogenes
GCA_001711165.1	MDOX00000000	SAMN05410825	A143	Listeria monocytogenes
GCA_001711145.1	MDPC00000000	SAMN05410694	OCF54	Listeria monocytogenes
GCA_001711125.1	MDPE00000000	SAMN05410641	Lm92	Listeria monocytogenes
GCA_001711105.1	MDPA00000000	SAMN05410691	OCF07	Listeria monocytogenes
GCA_001711085.1	MDPF00000000	SAMN05410638	Lm88	Listeria monocytogenes
GCA_001711055.1	MDPJ00000000	SAMN05410587	Lm69	Listeria monocytogenes
GCA_001711035.1	MDOC00000000	SAMN05410783	A505	Listeria monocytogenes
GCA_001711015.1	MDPV00000000	SAMN05410720	Lm227	Listeria monocytogenes
GCA_001710995.1	MDOA00000000	SAMN05410771	A508	Listeria monocytogenes
GCA_001710985.1	MDNY00000000	SAMN05410772	A512	Listeria monocytogenes
GCA_001710965.1	MDOT00000000	SAMN05410751	A22	Listeria monocytogenes
GCA_001710925.1	MDPO00000000	SAMN05410578	Lm32	Listeria monocytogenes
GCA_001710935.1	MDOD00000000	SAMN05410815	A504	Listeria monocytogenes
GCA_001710905.1	MDPK00000000	SAMN05410586	Lm60	Listeria monocytogenes
GCA_001710885.1	MDPP00000000	SAMN05410570	Lm11	Listeria monocytogenes
GCA_001710855.1	MDPY00000000	SAMN05410715	Lm224	Listeria monocytogenes
GCA_001710845.1	MDPT00000000	SAMN05410725	Lm230	Listeria monocytogenes
GCA_001710805.1	MDOV00000000	SAMN05410840	A147	Listeria monocytogenes
GCA_001710815.1	MDOU00000000	SAMN05410821	A19	Listeria monocytogenes
GCA_001710785.1	MDPU00000000	SAMN05410690	Lm191	Listeria monocytogenes
GCA_001710755.1	MDPD00000000	SAMN05410647	Lm96	Listeria monocytogenes
GCA_001710725.1	MDQQ00000000	SAMN05410810	A529	Listeria monocytogenes
GCA_001710715.1	MDQE00000000	SAMN05410699	Lm212	Listeria monocytogenes
GCA_001710705.1	MDQI00000000	SAMN05410831	C5	Listeria monocytogenes
GCA_001710685.1	MDQO00000000	SAMN05410814	A542	Listeria monocytogenes
GCA_001710655.1	MDQL00000000	SAMN05410834	A554	Listeria monocytogenes
GCA_001710635.1	MDQM00000000	SAMN05410784	A549-2	Listeria monocytogenes
GCA_001710615.1	MDQK00000000	SAMN05410757	A8	Listeria monocytogenes
GCA_001710605.1	MDQH00000000	SAMN05410655	Lm109	Listeria monocytogenes
GCA_001710575.1	MDQP00000000	SAMN05410779	A533	Listeria monocytogenes
GCA_001710555.1	MDPB00000000	SAMN05410695	OCF58	Listeria monocytogenes
GCA_001710535.1	MDPN00000000	SAMN05410580	Lm33	Listeria monocytogenes
GCA_001710525.1	MDPX00000000	SAMN05410716	Lm225	Listeria monocytogenes
GCA_001710485.1	MDQZ00000000	SAMN05410786	A506	Listeria monocytogenes
GCA_001710465.1	MDQX00000000	SAMN05410804	A510	Listeria monocytogenes
GCA_001710455.1	MDQD00000000	SAMN05410701	Lm214	Listeria monocytogenes
GCA_001710445.1	MDPL00000000	SAMN05410583	Lm50	Listeria monocytogenes
GCA_001710425.1	MDPW00000000	SAMN05410717	Lm226	Listeria monocytogenes
GCA_001710375.1	MDQF00000000	SAMN05410698	Lm211	Listeria monocytogenes
GCA_001710385.1	MDRE00000000	SAMN05410793	A32	Listeria monocytogenes
GCA_001710365.1	MDQG00000000	SAMN05410697	Lm210	Listeria monocytogenes
GCA_001710325.1	MDRI00000000	SAMN05410790	A20	Listeria monocytogenes
GCA_001710295.1	MDRC00000000	SAMN05410758	A47	Listeria monocytogenes
GCA_001710305.1	MDRD00000000	SAMN05410762	A39	Listeria monocytogenes
GCA_001710285.1	MDQN00000000	SAMN05410816	A547	Listeria monocytogenes
GCA_001710255.1	MDQR00000000	SAMN05410777	A527	Listeria monocytogenes
GCA_001710245.1	MDQS00000000	SAMN05410808	A522	Listeria monocytogenes
GCA_001710215.1	MDQT00000000	SAMN05410807	A520-4	Listeria monocytogenes
GCA_001710205.1	MDQW00000000	SAMN05410823	A52	Listeria monocytogenes
GCA_001710185.1	MDQU00000000	SAMN05410774	A520-2	Listeria monocytogenes
GCA_001710165.1	MDQV00000000	SAMN05410827	A520	Listeria monocytogenes
GCA_001710135.1	MDRA00000000	SAMN05410778	A502	Listeria monocytogenes
GCA_001710115.1	MDQY00000000	SAMN05410760	A51	Listeria monocytogenes
GCA_001710095.1	MDRL00000000	SAMN05410803	A152	Listeria monocytogenes
GCA_001710085.1	MDRB00000000	SAMN05256773	A5	Listeria monocytogenes
GCA_001710065.1	MDRH00000000	SAMN05410791	A24	Listeria monocytogenes
GCA_001710025.1	MDRG00000000	SAMN05410753	A26	Listeria monocytogenes
GCA_001710015.1	MDRF00000000	SAMN05410822	A31	Listeria monocytogenes
GCA_001710005.1	MDRJ00000000	SAMN05410801	A18	Listeria monocytogenes
GCA_001709955.1	MDRM00000000	SAMN05410770	A150	Listeria monocytogenes
GCA_001709965.1	MDRK00000000	SAMN05410750	A17	Listeria monocytogenes
GCA_001709945.1	MDRN00000000	SAMN05410789	A15	Listeria monocytogenes
GCA_001709905.1	MDRP00000000	SAMN05410768	A142	Listeria monocytogenes
GCA_001709895.1	MDRQ00000000	SAMN05410749	A13	Listeria monocytogenes
GCA_001709885.1	MDRO00000000	SAMN05410802	A144	Listeria monocytogenes
GCA_001709845.1	MDRS00000000	SAMN05410835	A10	Listeria monocytogenes
GCA_001709835.1	MDRR00000000	SAMN05410788	A12	Listeria monocytogenes
GCA_001709825.1	MDRT00000000	SAMN05410830	568	Listeria monocytogenes
GCA_001709805.1	MDPQ00000000	SAMN05256775	Lm1	Listeria monocytogenes
GCA_001709785.1	MDLX00000000	SAMN05410574	Lm20	Listeria monocytogenes
GCA_001709765.1	MDLW00000000	SAMN05410576	Lm22	Listeria monocytogenes
GCA_001709725.1	MDML00000000	SAMN05410722	Lm228	Listeria monocytogenes
GCA_001709715.1	MDMG00000000	SAMN05410738	Lm236	Listeria monocytogenes
GCA_001709705.1	MDMM00000000	SAMN05410709	Lm219	Listeria monocytogenes
GCA_001709685.1	MDMF00000000	SAMN05410568	Lm10	Listeria monocytogenes
GCA_001709645.1	MDMN00000000	SAMN05410708	Lm218	Listeria monocytogenes
GCA_001709635.1	MDME00000000	SAMN05410650	Lm101	Listeria monocytogenes
GCA_001709625.1	MDMJ00000000	SAMN05410726	Lm231	Listeria monocytogenes
GCA_001709605.1	MDMH00000000	SAMN05410737	Lm235	Listeria monocytogenes
GCA_001709565.1	MDLZ00000000	SAMN05410573	Lm15	Listeria monocytogenes
GCA_001709555.1	MDMK00000000	SAMN05410723	Lm229	Listeria monocytogenes
GCA_001709545.1	MDMA00000000	SAMN05410571	Lm14	Listeria monocytogenes
GCA_001709525.1	MDLY00000000	SAMN05410689	Lm190	Listeria monocytogenes
GCA_001709485.1	MDMO00000000	SAMN05410707	Lm217	Listeria monocytogenes
GCA_001709465.1	MDMI00000000	SAMN05410734	Lm233	Listeria monocytogenes
GCA_001709455.1	MDMB00000000	SAMN05410654	Lm106	Listeria monocytogenes
GCA_001709445.1	MDMQ00000000	SAMN05410702	Lm215	Listeria monocytogenes
GCA_001709385.1	MDMR00000000	SAMN05410700	Lm213	Listeria monocytogenes
GCA_001709395.1	MDMP00000000	SAMN05410706	Lm216	Listeria monocytogenes
GCA_001709365.1	MDMC00000000	SAMN05410652	Lm105	Listeria monocytogenes
GCA_001709375.1	MDMD00000000	SAMN05410651	Lm102	Listeria monocytogenes

SRA Data Details

Parameter	Value
Data volume, Gbases	277
Data volume, Tbytes	0.13

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Listeria monocytogenes

Genotypes associated with Listeria monocytogenes food-chain isolates displaying impaired or enhanced tolerances to cold, salt, acid, and desiccation stress

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