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Accession: PRJNA313213 ID: 313213

Xenopus laevis (African clawed frog)

Xenopus laevis Genome sequencing and assembly

See Genome Information for Xenopus laevis

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294 additional projects are related by organism.

Sequence and annotate the genome of the allotetraploid frog, Xenopus laevis.

Accession	PRJNA313213
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Xenopus laevis[Taxonomy ID: 8355] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus; Xenopus laevis
Publications	Session AM et al., "Genome evolution in the allotetraploid frog Xenopus laevis.", Nature, 2016 Oct 20;538(7625):336-343 Roe BA et al., "The complete nucleotide sequence of the Xenopus laevis mitochondrial genome.", J Biol Chem, 1985 Aug 15;260(17):9759-74
Grants	"A genome assembly for Xenopus laevis" (Grant ID R01 HD065705, NIH Eunice Kennedy Shriver National Institute of Child Health and Human Development) "Systematic improvement of Xenopus gene annotations and reference genomes" (Grant ID R01 HD080708, NIH Eunice Kennedy Shriver National Institute of Child Health and Human Development)
Submission	Registration date: 14-Jun-2016 International Xenopus Sequencing Consortium - UC Berkeley
Relevance	Model Organism
Locus Tag Prefix	XELAEV

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	511781
WGS master	2
Genomic DNA	403729
SRA Experiments	9
Protein Sequences	47732
Publications
PubMed	2
PMC	1
Other datasets
BioSample	2
Assembly	2

Assembly details:

Assembly level

Number of Assemblies

Chromosome

2
2

Assembly	Level	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_001663975.1		LYTH00000000	18	SAMN04518361	J	Xenopus laevis
GCA_017654675.1		JAGEVR000000000	18	SAMN18035302	J_2021	Xenopus laevis

SRA Data Details

Parameter	Value
Data volume, Gbases	304
Data volume, Tbytes	0.20

Related RefSeq Project

PRJNA338693 : Xenopus laevis strain:J RefSeq Genome sequencing and assembly

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LinkOut to external resources

GOLD: Gp0235290 [Genomes On Line Database]
GOLD: Gp0235290
Genomes On Line Database

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