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Accession: PRJNA273983 ID: 273983

Xanthomonas

Comparative genomics of different strains and species of Xanthomonas

Sequencing different strains and species of Xanthomonas related with different types of citrus canker. More...

Accession	PRJNA273983
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Xanthomonas[Taxonomy ID: 338] Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas
Publications (total 3) Less...	Patané JSL et al., "Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.", BMC Genomics, 2019 Sep 9;20(1):700 More... Patané JSL et al., "Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.", BMC Genomics, 2019 Sep 9;20(1):700 Fonseca NP et al., "Detection and identification of Xanthomonas pathotypes associated with citrus diseases using comparative genomics and multiplex PCR.", PeerJ, 2019;7:e7676 Fonseca NP et al., "Analyses of Seven New Genomes of Xanthomonas citri pv. aurantifolii Strains, Causative Agents of Citrus Canker B and C, Show a Reduced Repertoire of Pathogenicity-Related Genes.", Front Microbiol, 2019;10:2361 Less...
Grants	"BIGA" (Grant ID 051/2013, CAPES Foundation)
Submission	Registration date: 14-May-2018 UNESP-FCAV
Related Resources	Xanthomonas Genome Project
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1941
WGS master	11
Genomic DNA	11
SRA Experiments	7
Protein Sequences	63179
Publications
PubMed	3
PMC	3
Other datasets
BioSample	16
Assembly	15

Genome assemblies, organelles and plasmids:

Assembly GCA_001610795.1 :

Name	RefSeq	GenBank
Chromosome	NZ_CP011160.1	CP011160.1
Plasmid	NZ_CP011162.1	CP011162.1
Plasmid	NZ_CP011161.1	CP011161.1

Assembly GCA_001610815.1 :

Name	RefSeq	GenBank
Chromosome	NZ_CP011163.1	CP011163.1
Plasmid	NZ_CP011165.1	CP011165.1
Plasmid	NZ_CP011164.1	CP011164.1
Plasmid	NZ_CP011166.1	CP011166.1

Assembly GCA_001610915.1 :

Name	RefSeq	GenBank
Chromosome	NZ_CP012002.1	CP012002.1
Plasmid	NZ_CP012003.1	CP012003.1

Assembly GCA_002079965.1 :

Name	RefSeq	GenBank
Chromosome	NZ_CP011250.1	CP011250.1
Plasmid	NZ_CP011251.1	CP011251.1

Assembly GCA_003122545.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUN00000000

Assembly GCA_003122565.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUP00000000

Assembly GCA_003122575.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUQ00000000

Assembly GCA_003122605.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUE00000000

Assembly GCA_003122625.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUF00000000

Assembly GCA_003122665.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUG00000000

Assembly GCA_004329265.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUH00000000

Assembly GCA_004329275.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUI00000000

Assembly GCA_004329295.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUJ00000000

Assembly GCA_005059785.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUO00000000

Assembly GCA_005059795.1 :

Name	GenBank
Whole Genome Shotgun Assembly	LAUR00000000

SRA Data Details

Parameter	Value
Data volume, Gbases	14
Data volume, Mbytes	7868

Supplemental Content

Related information

Assembly
All related Assemblies
BioSample
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Full text in PMC
PMC links
Genome
Related Genomes
Genomic DNA
Link to genomic DNA records
Nucleotide
Related Nucleotide entry
Protein
Related Proteins
PubMed
PubMed Links
Related Genes
Genes related to a genome project
SRA
All related SRA Experiments
Taxonomy
Taxonomy Links
WGS master
Link to WGS master record(s)

Related Resources

Xanthomonas Genome Project
Xanthomonas Genome Project

LinkOut to external resources

2791355357: Xanthomonas citri aurantifolii FDC 1609 [Integrated Microbial Genomes]
2791355357: Xanthomonas citri aurantifolii FDC 1609
Integrated Microbial Genomes
2791355356: Xanthomonas citri aurantifolii FDC 1559 [Integrated Microbial Genomes]
2791355356: Xanthomonas citri aurantifolii FDC 1559
Integrated Microbial Genomes
2791355355: Xanthomonas citri aurantifolii 1566 [Integrated Microbial Genomes]
2791355355: Xanthomonas citri aurantifolii 1566
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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Comparative genomics of different strains and species of Xanthomonas

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