Origins and evolution of extreme lifespan in the N... (ID 754564) - BioProject

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Accession: PRJEB42258 ID: 754564

Origins and evolution of extreme lifespan in the North Pacific Rockfish

Studying the origin, speciation and the variation in longevity across rockfish through whole genome and transcriptome sequencing

Pacific rockfish exhibit extreme variation in lifespan with some species amongst most long-lived vertebrates in existence. More...

Accession	PRJEB42258
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Submission	Registration date: 14-Aug-2021 UNIVERSITY OF CALIFORNIA AT BERKELEY
Locus Tag Prefix	RGP

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	102
SRA Experiments	134
Other datasets
BioSample	106
Assembly	102

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

100
2
102

Assembly	WGS	BioSample	Taxonomy
GCA_916700685.1	CAKAKR000000000	SAMEA7962314	Adelosebastes latens
GCA_916700675.1	CAKAKQ000000000	SAMEA7962315	Helicolenus avius
GCA_916700815.1	CAKALG000000000	SAMEA7962316	Helicolenus hilgendorfi
GCA_916700935.1	CAKALT000000000	SAMEA7962317	Hozukius emblemarius
GCA_916700995.1	CAKALU000000000	SAMEA7962318	Hozukius guyotensis
GCA_916700875.1	CAKAKS000000000	SAMEA7962319	Sebastes aleutianus
GCA_916700825.1	CAKALN000000000	SAMEA7962320	Sebastes alutus
GCA_916700955.1	CAKALD000000000	SAMEA7962321	Sebastes atrovirens
GCA_916700975.1	CAKALE000000000	SAMEA7962322	Sebastes auriculatus
GCA_916700905.1	CAKALP000000000	SAMEA7962323	Sebastes aurora
GCA_916700865.1	CAKALC000000000	SAMEA7962324	Sebastes babcocki
GCA_916700835.1	CAKALJ000000000	SAMEA7962325	Sebastes baramenuke
GCA_916700985.1	CAKALF000000000	SAMEA7962326	Sebastes borealis
GCA_916700855.1	CAKALH000000000	SAMEA7962327	Sebastes carnatus
GCA_916700845.1	CAKALV000000000	SAMEA7962328	Sebastes caurinus
GCA_916700745.1	CAKAKT000000000	SAMEA7962329	Sebastes cheni
GCA_916700915.1	CAKAKY000000000	SAMEA7962330	Sebastes chlorostictus
GCA_916700805.1	CAKALO000000000	SAMEA7962331	Sebastes ciliatus
GCA_916700895.1	CAKALB000000000	SAMEA7962332	Sebastes constellatus
GCA_916700755.1	CAKAKV000000000	SAMEA7962333	Sebastes crameri
GCA_916700715.1	CAKAKU000000000	SAMEA7962334	Sebastes crameri
GCA_916700725.1	CAKALW000000000	SAMEA7992531	Sebastes dallii
GCA_916700945.1	CAKALX000000000	SAMEA7962335	Sebastes diaconus
GCA_916700885.1	CAKALR000000000	SAMEA7962336	Sebastes diploproa
GCA_916700925.1	CAKALK000000000	SAMEA7962337	Sebastes elongatus
GCA_916700965.1	CAKALQ000000000	SAMEA7962338	Sebastes ensifer
GCA_916700775.2	CAKAKX000000000	SAMEA7962341	Sebastes entomelas
GCA_916701365.1	CAKAMY000000000	SAMEA7962340	Sebastes entomelas
GCA_916700705.1	CAKALA000000000	SAMEA7962342	Sebastes exsul
GCA_916700765.1	CAKAKZ000000000	SAMEA7962343	Sebastes fasciatus
GCA_916700785.1	CAKAKW000000000	SAMEA7962344	Sebastes flavidus
GCA_916700795.1	CAKALL000000000	SAMEA7962345	Sebastes glaucus
GCA_916700735.1	CAKALM000000000	SAMEA7962346	Sebastes goodei
GCA_916700695.1	CAKALI000000000	SAMEA7962347	Sebastes helvomaculatus
GCA_916701215.1	CAKANG000000000	SAMEA7962348	Sebastes hopkinsi
GCA_916701285.1	CAKAMQ000000000	SAMEA7962349	Sebastes hubbsi
GCA_916701085.1	CAKALZ000000000	SAMEA7962350	Sebastes inermis
GCA_916701015.1	CAKANE000000000	SAMEA7962351	Sebastes iracundus
GCA_916701335.1	CAKAMS000000000	SAMEA7962352	Sebastes itinus
GCA_916701295.1	CAKAMP000000000	SAMEA7962353	Sebastes jordani
GCA_916701105.1	CAKAMA000000000	SAMEA7962354	Sebastes joyneri
GCA_916701135.1	CAKAML000000000	SAMEA7962355	Sebastes kiyomatsui
GCA_916701025.1	CAKANJ000000000	SAMEA7962356	Sebastes koreanus
GCA_916701195.1	CAKAME000000000	SAMEA7962357	Sebastes levis
GCA_916701265.1	CAKAMT000000000	SAMEA7962359	Sebastes maliger
GCA_916701175.1	CAKAMV000000000	SAMEA7962358	Sebastes maliger
GCA_916701035.1	CAKAMZ000000000	SAMEA7962360	Sebastes matsubarae
GCA_916701325.1	CAKANC000000000	SAMEA7962361	Sebastes melanops
GCA_916701165.1	CAKAMK000000000	SAMEA7962362	Sebastes melanostomus
GCA_916701205.1	CAKAMO000000000	SAMEA7962363	Sebastes mentella
GCA_916701115.1	CAKAMF000000000	SAMEA7962364	Sebastes miniatus
GCA_916701005.1	CAKAMC000000000	SAMEA7962365	Sebastes miniatus
GCA_916701275.1	CAKALS000000000	SAMEA7962367	Sebastes miniatus
GCA_916701305.1	CAKAMW000000000	SAMEA7962368	Sebastes minor
GCA_916701145.1	CAKAMX000000000	SAMEA7962369	Sebastes moseri
GCA_916701315.1	CAKAMI000000000	SAMEA7962370	Sebastes moseri
GCA_916701245.1	CAKANA000000000	SAMEA7962371	Sebastes mystinus
GCA_916701235.1	CAKAND000000000	SAMEA7962372	Sebastes mystinus
GCA_916701055.1	CAKAMR000000000	SAMEA7962373	Sebastes nebulosus
GCA_916701185.1	CAKANB000000000	SAMEA7962374	Sebastes nigrocinctus
GCA_916701345.1	CAKAMH000000000	SAMEA7962375	Sebastes nivosus
GCA_916701225.1	CAKAMM000000000	SAMEA7962376	Sebastes nudus
GCA_916701095.1	CAKALY000000000	SAMEA7962377	Sebastes oblongus
GCA_916701125.1	CAKAMG000000000	SAMEA7962378	Sebastes oculatus
GCA_916701355.1	CAKAMU000000000	SAMEA7962379	Sebastes oculatus
GCA_916701155.1	CAKAMN000000000	SAMEA7962380	Sebastes oculatus
GCA_916701075.1	CAKAMJ000000000	SAMEA7962381	Sebastes pachycephalus
GCA_916701045.1	CAKANF000000000	SAMEA7962382	Sebastes paucispinis
GCA_916701065.2	CAKAMD000000000	SAMEA7962384	Sebastes pinniger
GCA_916701255.1	CAKAMB000000000	SAMEA7962385	Sebastes pinniger
GCA_916701505.1	CAKAOB000000000	SAMEA7962386	Sebastes polyspinis
GCA_916701495.1	CAKANW000000000	SAMEA7962387	Sebastes proriger
GCA_916701435.1	CAKANK000000000	SAMEA7962388	Sebastes rastrelliger
GCA_916701525.1	CAKANM000000000	SAMEA7962389	Sebastes reedi
GCA_916701555.1	CAKANI000000000	SAMEA7962392	Sebastes rosaceus
GCA_916701535.1	CAKANT000000000	SAMEA7962393	Sebastes rosaceus
GCA_916701545.1	CAKANU000000000	SAMEA7962394	Sebastes rosenblatti
GCA_916701515.1	CAKAOD000000000	SAMEA7962395	Sebastes ruberrimus
GCA_916701565.1	CAKAON000000000	SAMEA7962396	Sebastes ruberrimus
GCA_916701395.1	CAKANX000000000	SAMEA7962397	Sebastes rubrivinctus
GCA_916701605.1	CAKANL000000000	SAMEA7962398	Sebastes rubrivinctus
GCA_916701375.1	CAKANR000000000	SAMEA7962399	Sebastes saxicola
GCA_916701485.1	CAKANS000000000	SAMEA7962400	Sebastes schlegelii
GCA_916701475.1	CAKANP000000000	SAMEA7962401	Sebastes scythropus
GCA_916701385.1	CAKANN000000000	SAMEA7962402	Sebastes semicinctus
GCA_916701455.1	CAKANO000000000	SAMEA7962403	Sebastes serriceps
GCA_916701425.1	CAKAOG000000000	SAMEA7962404	Sebastes steindachneri
GCA_916701585.1	CAKAOE000000000	SAMEA7962405	Sebastes taczanowskii
GCA_916701625.1	CAKANQ000000000	SAMEA7962406	Sebastes thompsoni
GCA_916701465.1	CAKANY000000000	SAMEA7962407	Sebastes trivittatus
GCA_916701575.1	CAKANH000000000	SAMEA8992461	Sebastes umbrosus
GCA_916701445.1	CAKAOA000000000	SAMEA7962411	Sebastes variabilis
GCA_916701405.1	CAKAOF000000000	SAMEA7962412	Sebastes variegatus
GCA_916701615.1	CAKANV000000000	SAMEA7962413	Sebastes vulpes
GCA_916701595.1	CAKANZ000000000	SAMEA7962414	Sebastes wilsoni
GCA_916701415.1	CAKAOC000000000	SAMEA7962415	Sebastes zacentrus
GCA_916701635.1	CAKAOL000000000	SAMEA7962416	Sebastes zonatus
GCA_916701655.1	CAKAOI000000000	SAMEA7962417	Sebastiscus albofasciatus
GCA_916701665.1	CAKAOH000000000	SAMEA7962419	Sebastiscus tertius
GCA_916701645.2	CAKAOJ000000000	SAMEA7962420	Sebastolobus alascanus
GCA_916701685.1	CAKAOM000000000	SAMEA7962421	Sebastolobus alascanus
GCA_916701675.1	CAKAOK000000000	SAMEA7962422	Sebastolobus altivelis

SRA Data Details

Parameter	Value
Data volume, Gbases	3,863
Data volume, Tbytes	1.26

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Origins and evolution of extreme lifespan in the North Pacific Rockfish

Studying the origin, speciation and the variation in longevity across rockfish through whole genome and transcriptome sequencing

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