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Links from BioSample

Accession: PRJNA394757 ID: 394757

Bacteria

isolates from the human vaginal microbiome: genome sequencing and assembly

Gardnerella vaginalis is strongly associated with an imbalance in the vaginal microbiota called "Bacterial Vaginosis" (BV), which can lead to negative reproductive health outcomes such as pre-term birth and increased transmission of sexually transmitted infections. More...
AccessionPRJNA394757
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsKhan S et al., "A Generalist Lifestyle Allows Rare Gardnerella spp. to Persist at Low Levels in the Vaginal Microbiome.", Microb Ecol, 2021 Nov;82(4):1048-1060
SubmissionRegistration date: 23-Aug-2018
University of Saskatchewan
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)269
WGS master29
SRA Experiments3
Protein Sequences32620
Publications
PubMed1
PMC1
Other datasets
BioSample29
Assembly29
Assembly details:
Assembly levelNumber of Assemblies
24
5
29
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003585865.1ScaffoldNQOR00000000SAMN07490623
GH005
GCA_003426325.1ScaffoldNNRP00000000SAMN07358670
GH022
GCA_003426305.1ScaffoldNNSD00000000SAMN07358671
N170
GCA_015700715.1ScaffoldWMLJ00000000SAMN13328606
NR002
GCA_003426555.1ScaffoldNNSB00000000SAMN07358673
NR003
GCA_003426525.1ScaffoldNNSA00000000SAMN07358674
NR015
GCA_003585715.1ScaffoldNQOQ00000000SAMN07490624
NR016
GCA_003426505.1ScaffoldNNRZ00000000SAMN07358675
NR017
GCA_003426465.1ScaffoldNNRY00000000SAMN07358676
NR019
GCA_003426475.1ScaffoldNNRX00000000SAMN07358677
NR020
GCA_003585845.1ScaffoldNQOP00000000SAMN07490625
NR021
GCA_003585795.1ScaffoldNQOL00000000SAMN07490629
NR026
GCA_015700695.1ContigWMLI00000000SAMN13328607
NR043
GCA_015700665.1ContigWMLH00000000SAMN13328608
NR044
GCA_003585735.2ContigNQOH00000000SAMN07490633
NR047
GCA_003585825.1ScaffoldNQOM00000000SAMN07490628
VN002
GCA_003426415.1ScaffoldNNRV00000000SAMN07358679
VN003
GCA_003585625.1ScaffoldNQOI00000000SAMN07490632
WP012
GCA_003585695.1ScaffoldNQOO00000000SAMN07490626
WP021
GCA_003585675.1ScaffoldNQON00000000SAMN07490627
WP022
GCA_003426405.2ContigNNRT00000000SAMN07358666
GH007
GCA_003426385.2ContigNNRR00000000SAMN07358668
GH020
GCA_003426285.1ScaffoldNNRU00000000SAMN07358680
WP023
GCA_003426565.1ScaffoldNNRS00000000SAMN07358667
GH019
GCA_003426545.1ScaffoldNNSC00000000SAMN07358672
NR001
GCA_003426345.1ScaffoldNNRQ00000000SAMN07358669
GH021
GCA_003426445.1ScaffoldNNRW00000000SAMN07358678
NR037
GCA_003585655.1ScaffoldNQOK00000000SAMN07490630
NR038
GCA_003585755.1ScaffoldNQOJ00000000SAMN07490631
NR039
SRA Data Details
ParameterValue
Data volume, Gbases2
Data volume, Mbytes1437

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