gut metagenome (ID 357304) - BioProject

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Accession: PRJNA357304 ID: 357304

gut metagenome

Population genomes from koala and wombat faeces

The study goal was to identify the top 15 population genomes found in a koala called Zagget and a wombat called Phil

Accession	PRJNA357304
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	gut metagenome[Taxonomy ID: 749906] unclassified sequences; metagenomes; organismal metagenomes; gut metagenome
Publications	Shiffman ME et al., "Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion.", PeerJ, 2017;5:e4075
Submission	Registration date: 10-Jan-2017 University of Queensland
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2513
WGS master	30
Publications
PubMed	1
PMC	1
Other datasets
BioSample	32
Assembly	30

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

30
30

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_001940945.1	MSGW00000000	SAMN06140815	Phil8	Akkermansia sp. Phil8
GCA_001941065.1	MSHJ00000000	SAMN06140837	Zagget8	Alistipes sp. Zagget8
GCA_002825455.1	PELD00000000	SAMN06140807	Phil2	Bacilli bacterium Phil2
GCA_002633275.1	NWBO00000000	SAMN06140819	Phil12	Bacteroidales bacterium Phil12
GCA_002633315.1	NWBN00000000	SAMN06140813	Phil6	Bacteroidales bacterium Phil6
GCA_001940965.1	MSHA00000000	SAMN06140820	Phil13	Bacteroides sp. Phil13
GCA_002633155.1	NWBL00000000	SAMN06140844	Zag15	Candidatus Melainabacteria bacterium Zag15
GCA_001940855.1	MSGS00000000	SAMN06140808	Phil1	Christensenellaceae bacterium Phil1
GCA_001940895.1	MSGY00000000	SAMN06140817	Phil10	Christensenellaceae bacterium Phil10
GCA_001940845.1	MSGV00000000	SAMN06140814	Phil7	Christensenellaceae bacterium Phil7
GCA_001941235.1	MSHO00000000	SAMN06140843	Zagget14	Desulfovibrio sp. Zagget14
GCA_002633185.1	NWBM00000000	SAMN06140812	Phil5	Lachnospiraceae bacterium Phil5
GCA_001941125.1	MSHN00000000	SAMN06140842	Zagget13	Lachnospiraceae bacterium Zagget13
GCA_001941045.1	MSHD00000000	SAMN06140824	Zagget2	Lachnospiraceae bacterium Zagget2
GCA_001941025.1	MSHE00000000	SAMN06140825	Zagget3	Lachnospiraceae bacterium Zagget3
GCA_001940805.1	MSGU00000000	SAMN06140811	Phil4	Methanocorpusculaceae archaeon Phil4
GCA_001940985.1	MSHB00000000	SAMN06140821	Phil14	Mollicutes bacterium Phil14
GCA_002633115.1	NWBJ00000000	SAMN06140823	Zag1	Muribaculaceae bacterium Zag1
GCA_002633305.1	NWBK00000000	SAMN06140839	Zag10	Muribaculaceae bacterium Zag10
GCA_001941225.1	MSHM00000000	SAMN06140841	Zagget12	Oscillospiraceae bacterium Zagget12
GCA_001941165.1	MSHF00000000	SAMN06140826	Zagget4	Oscillospiraceae bacterium Zagget4
GCA_001941075.1	MSHH00000000	SAMN06140835	Zagget6	Oscillospiraceae bacterium Zagget6
GCA_001941185.1	MSHG00000000	SAMN06140834	Zagget5	Rhodocyclaceae bacterium Zagget5
GCA_001940925.1	MSGZ00000000	SAMN06140818	Phil11	Ruminococcus sp. Phil11
GCA_001940995.1	MSHC00000000	SAMN06140822	Phil15	Ruminococcus sp. Phil15
GCA_001941135.1	MSHL00000000	SAMN06140840	Zagget11	Ruminococcus sp. Zagget11
GCA_001941055.1	MSHI00000000	SAMN06140836	Zagget7	Ruminococcus sp. Zagget7
GCA_001940825.1	MSGT00000000	SAMN06140809	Phil3	Sphaerochaeta sp. Phil3
GCA_001940885.1	MSGX00000000	SAMN06140816	Phil9	Succinivibrio sp. Phil9
GCA_001941205.1	MSHK00000000	SAMN06140838	Zagget9	Synergistes sp. Zagget9

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gut metagenome

Population genomes from koala and wombat faeces

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