Column Experiment I-metagenome (ID 1086230) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from BioSample

Accession: PRJNA1086230 ID: 1086230

Column Experiment I-metagenome

Column Experiment I-metagenome Metagenome

Total microbial DNA was extracted from the surface sediment and biofilm samples of CI mesocosm experiment for metagenomic sequencing.

Accession	PRJNA1086230
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	sediment metagenome[Taxonomy ID: 749907] unclassified sequences; metagenomes; ecological metagenomes; sediment metagenome
Submission	Registration date: 4-Apr-2024 McGill University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	65
SRA Experiments	28
Other datasets
BioSample	67
Assembly	65

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

65
65

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_037969565.1	JBBKXQ000000000	SAMN40570782	metabat_bins.134	Acidimicrobiales bacterium
GCA_037968895.1	JBBKWJ000000000	SAMN40570815	metabat_bins.301	Acidimicrobiales bacterium
GCA_037968675.1	JBBKVY000000000	SAMN40570826	metabat_bins.344	Acidimicrobiales bacterium
GCA_037969415.1	JBBKXI000000000	SAMN40570790	metabat_bins.171	Acidimicrobiia bacterium
GCA_037969175.1	JBBKWX000000000	SAMN40570801	metabat_bins.236	Bacteroidia bacterium
GCA_037968475.1	JBBKVO000000000	SAMN40570836	metabat_bins.63	Bacteroidia bacterium
GCA_037968415.1	JBBKVM000000000	SAMN40570838	metabat_bins.79	Bacteroidia bacterium
GCA_037968775.1	JBBKWD000000000	SAMN40570821	metabat_bins.319	Bdellovibrio sp.
GCA_037969275.1	JBBKXC000000000	SAMN40570796	metabat_bins.215	Bdellovibrionales bacterium
GCA_037969255.1	JBBKXB000000000	SAMN40570797	metabat_bins.223	Bdellovibrionales bacterium
GCA_037969235.1	JBBKXA000000000	SAMN40570798	metabat_bins.224	Bdellovibrionales bacterium
GCA_037969075.1	JBBKWS000000000	SAMN40570806	metabat_bins.247	Bdellovibrionales bacterium
GCA_037969035.1	JBBKWU000000000	SAMN40570804	metabat_bins.243	Bdellovibrionales bacterium
GCA_037968575.1	JBBKVR000000000	SAMN40570833	metabat_bins.46	Bdellovibrionales bacterium
GCA_037968515.1	JBBKVQ000000000	SAMN40570834	metabat_bins.54	Bradymonadaceae bacterium
GCA_037968655.1	JBBKVW000000000	SAMN40570828	metabat_bins.363	Burkholderiaceae bacterium
GCA_037969525.1	JBBKXO000000000	SAMN40570784	metabat_bins.144	Burkholderiales bacterium
GCA_037969665.1	JBBKXV000000000	SAMN40570777	mbin.202_sub	Candidatus Gracilibacteria bacterium
GCA_037968875.1	JBBKWI000000000	SAMN40570816	metabat_bins.305	Candidatus Sericytochromatia bacterium
GCA_037968995.1	JBBKWP000000000	SAMN40570809	metabat_bins.273	Candidatus Xenobia bacterium
GCA_037968595.1	JBBKVU000000000	SAMN40570830	metabat_bins.377	Comamonas sp.
GCA_037969135.1	JBBKWV000000000	SAMN40570803	metabat_bins.239	Ferruginibacter sp.
GCA_037968795.1	JBBKWE000000000	SAMN40570820	metabat_bins.314	Ferruginibacter sp.
GCA_037969645.1	JBBKXU000000000	SAMN40570778	metabat_bins.11	Ferruginibacter sp.
GCA_037969605.1	JBBKXS000000000	SAMN40570780	metabat_bins.129	Flavobacteriaceae bacterium
GCA_037969055.1	JBBKWR000000000	SAMN40570807	metabat_bins.260	Flavobacteriaceae bacterium
GCA_037969215.1	JBBKWY000000000	SAMN40570800	metabat_bins.23	Halioglobus sp.
GCA_037969355.1	JBBKXG000000000	SAMN40570792	metabat_bins.179	Halopseudomonas sabulinigri
GCA_037969335.1	JBBKXE000000000	SAMN40570794	metabat_bins.189	Hyphomonas sp.
GCA_037969115.1	JBBKWQ000000000	SAMN40570808	metabat_bins.272	Ilumatobacteraceae bacterium
GCA_037968435.1	JBBKVL000000000	SAMN40570839	metabat_bins.8	Janthinobacterium svalbardensis
GCA_037969455.1	JBBKXL000000000	SAMN40570787	metabat_bins.157	Lewinella sp.
GCA_037969095.1	JBBKWT000000000	SAMN40570805	metabat_bins.245	Loktanella salsilacus
GCA_037968555.1	JBBKVS000000000	SAMN40570832	metabat_bins.387	Lysobacterales bacterium
GCA_037969155.1	JBBKWW000000000	SAMN40570802	metabat_bins.238	Moraxellaceae bacterium
GCA_037968855.1	JBBKWH000000000	SAMN40570817	metabat_bins.306	Moraxellaceae bacterium
GCA_037969015.1	JBBKWO000000000	SAMN40570810	metabat_bins.276	Opitutaceae bacterium
GCA_037968835.1	JBBKWG000000000	SAMN40570818	metabat_bins.308	Paracoccaceae bacterium
GCA_037969545.1	JBBKXP000000000	SAMN40570783	metabat_bins.135	Paracoccaceae bacterium
GCA_037968535.1	JBBKVT000000000	SAMN40570831	metabat_bins.385	Paracoccaceae bacterium
GCA_037968375.1	JBBKVJ000000000	SAMN40570841	metabat_bins.99	Paracoccaceae bacterium
GCA_037969375.1	JBBKXH000000000	SAMN40570791	metabat_bins.176	Paraglaciecola sp.
GCA_037968935.1	JBBKWM000000000	SAMN40570812	metabat_bins.281	Paraperlucidibaca sp.
GCA_037968815.1	JBBKWF000000000	SAMN40570819	metabat_bins.309	Pelobium sp.
GCA_037968635.1	JBBKVV000000000	SAMN40570829	metabat_bins.370	Phenylobacterium sp.
GCA_037968915.1	JBBKWK000000000	SAMN40570814	metabat_bins.290	Pontixanthobacter sp.
GCA_037968495.1	JBBKVP000000000	SAMN40570835	metabat_bins.56	Pontixanthobacter sp.
GCA_037969395.1	JBBKXJ000000000	SAMN40570789	metabat_bins.161	Pseudomonadales bacterium
GCA_037968715.1	JBBKVZ000000000	SAMN40570825	metabat_bins.341	Pseudomonas sp.
GCA_037969475.1	JBBKXN000000000	SAMN40570785	metabat_bins.147	Pyrinomonadaceae bacterium
GCA_037969315.1	JBBKXF000000000	SAMN40570793	metabat_bins.187_sub	Pyrinomonadaceae bacterium
GCA_037969295.1	JBBKXD000000000	SAMN40570795	metabat_bins.193	Pyrinomonadaceae bacterium
GCA_037968955.1	JBBKWN000000000	SAMN40570811	metabat_bins.280	Rheinheimera sp.
GCA_037968455.1	JBBKVN000000000	SAMN40570837	metabat_bins.73	Rhodoferax sp.
GCA_037968615.1	JBBKVX000000000	SAMN40570827	metabat_bins.345	Rickettsiales bacterium
GCA_037969195.1	JBBKWZ000000000	SAMN40570799	metabat_bins.225	Rubricoccaceae bacterium
GCA_037968395.1	JBBKVK000000000	SAMN40570840	metabat_bins.80	Saprospiraceae bacterium
GCA_037969625.1	JBBKXT000000000	SAMN40570779	metabat_bins.113	Saprospiraceae bacterium
GCA_037968695.1	JBBKWA000000000	SAMN40570824	metabat_bins.332	Saprospiraceae bacterium
GCA_037969505.1	JBBKXM000000000	SAMN40570786	metabat_bins.154	Thermomonas sp.
GCA_037969585.1	JBBKXR000000000	SAMN40570781	metabat_bins.133	Verrucomicrobiales bacterium
GCA_037969435.1	JBBKXK000000000	SAMN40570788	metabat_bins.159	Vicingaceae bacterium
GCA_037968755.1	JBBKWB000000000	SAMN40570823	metabat_bins.323	Woeseia sp.
GCA_037968735.1	JBBKWC000000000	SAMN40570822	metabat_bins.32	Woeseiaceae bacterium
GCA_037968975.1	JBBKWL000000000	SAMN40570813	metabat_bins.284	Woeseiaceae bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	94
Data volume, Mbytes	30970

BioProject

Result Filters

Display Settings:

Send to:

Links from BioSample

Column Experiment I-metagenome

Column Experiment I-metagenome Metagenome

Supplemental Content

Related information

Recent activity